Literature DB >> 23144414

Complete genome sequence of Alcanivorax dieselolei type strain B5.

Qiliang Lai1, Weiwei Li, Zongze Shao.   

Abstract

Alcanivorax dieselolei B5(T) was isolated from oil-contaminated surface water of the Bohai Sea of China and characterized by the efficient degradation of alkane (C(5)-C(36)). Here we report the complete genome of B5(T) and genes associated with alkane degradation.

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Year:  2012        PMID： 23144414      PMCID： PMC3497491          DOI： 10.1128/JB.01813-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Multiple alkane hydroxylase systems in a marine alkane degrader, Alcanivorax dieselolei B-5.

Authors:  Chenli Liu; Wanpeng Wang; Yehui Wu; Zhongwen Zhou; Qiliang Lai; Zongze Shao
Journal:  Environ Microbiol       Date:  2011-01-24       Impact factor: 5.491

5.  Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment.

Authors:  Chenli Liu; Zongze Shao
Journal:  Int J Syst Evol Microbiol       Date:  2005-05       Impact factor: 2.747

6.  Isolation and characterization of a novel biosurfactant produced by hydrocarbon-degrading bacterium Alcanivorax dieselolei B-5.

Authors:  N Qiao; Z Shao
Journal:  J Appl Microbiol       Date:  2009-08-06       Impact factor: 3.772

7.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

9.  Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:  David R Bentley; Shankar Balasubramanian; Harold P Swerdlow; Geoffrey P Smith; John Milton; Clive G Brown; Kevin P Hall; Dirk J Evers; Colin L Barnes; Helen R Bignell; Jonathan M Boutell; Jason Bryant; Richard J Carter; R Keira Cheetham; Anthony J Cox; Darren J Ellis; Michael R Flatbush; Niall A Gormley; Sean J Humphray; Leslie J Irving; Mirian S Karbelashvili; Scott M Kirk; Heng Li; Xiaohai Liu; Klaus S Maisinger; Lisa J Murray; Bojan Obradovic; Tobias Ost; Michael L Parkinson; Mark R Pratt; Isabelle M J Rasolonjatovo; Mark T Reed; Roberto Rigatti; Chiara Rodighiero; Mark T Ross; Andrea Sabot; Subramanian V Sankar; Aylwyn Scally; Gary P Schroth; Mark E Smith; Vincent P Smith; Anastassia Spiridou; Peta E Torrance; Svilen S Tzonev; Eric H Vermaas; Klaudia Walter; Xiaolin Wu; Lu Zhang; Mohammed D Alam; Carole Anastasi; Ify C Aniebo; David M D Bailey; Iain R Bancarz; Saibal Banerjee; Selena G Barbour; Primo A Baybayan; Vincent A Benoit; Kevin F Benson; Claire Bevis; Phillip J Black; Asha Boodhun; Joe S Brennan; John A Bridgham; Rob C Brown; Andrew A Brown; Dale H Buermann; Abass A Bundu; James C Burrows; Nigel P Carter; Nestor Castillo; Maria Chiara E Catenazzi; Simon Chang; R Neil Cooley; Natasha R Crake; Olubunmi O Dada; Konstantinos D Diakoumakos; Belen Dominguez-Fernandez; David J Earnshaw; Ugonna C Egbujor; David W Elmore; Sergey S Etchin; Mark R Ewan; Milan Fedurco; Louise J Fraser; Karin V Fuentes Fajardo; W Scott Furey; David George; Kimberley J Gietzen; Colin P Goddard; George S Golda; Philip A Granieri; David E Green; David L Gustafson; Nancy F Hansen; Kevin Harnish; Christian D Haudenschild; Narinder I Heyer; Matthew M Hims; Johnny T Ho; Adrian M Horgan; Katya Hoschler; Steve Hurwitz; Denis V Ivanov; Maria Q Johnson; Terena James; T A Huw Jones; Gyoung-Dong Kang; Tzvetana H Kerelska; Alan D Kersey; Irina Khrebtukova; Alex P Kindwall; Zoya Kingsbury; Paula I Kokko-Gonzales; Anil Kumar; Marc A Laurent; Cynthia T Lawley; Sarah E Lee; Xavier Lee; Arnold K Liao; Jennifer A Loch; Mitch Lok; Shujun Luo; Radhika M Mammen; John W Martin; Patrick G McCauley; Paul McNitt; Parul Mehta; Keith W Moon; Joe W Mullens; Taksina Newington; Zemin Ning; Bee Ling Ng; Sonia M Novo; Michael J O'Neill; Mark A Osborne; Andrew Osnowski; Omead Ostadan; Lambros L Paraschos; Lea Pickering; Andrew C Pike; Alger C Pike; D Chris Pinkard; Daniel P Pliskin; Joe Podhasky; Victor J Quijano; Come Raczy; Vicki H Rae; Stephen R Rawlings; Ana Chiva Rodriguez; Phyllida M Roe; John Rogers; Maria C Rogert Bacigalupo; Nikolai Romanov; Anthony Romieu; Rithy K Roth; Natalie J Rourke; Silke T Ruediger; Eli Rusman; Raquel M Sanches-Kuiper; Martin R Schenker; Josefina M Seoane; Richard J Shaw; Mitch K Shiver; Steven W Short; Ning L Sizto; Johannes P Sluis; Melanie A Smith; Jean Ernest Sohna Sohna; Eric J Spence; Kim Stevens; Neil Sutton; Lukasz Szajkowski; Carolyn L Tregidgo; Gerardo Turcatti; Stephanie Vandevondele; Yuli Verhovsky; Selene M Virk; Suzanne Wakelin; Gregory C Walcott; Jingwen Wang; Graham J Worsley; Juying Yan; Ling Yau; Mike Zuerlein; Jane Rogers; James C Mullikin; Matthew E Hurles; Nick J McCooke; John S West; Frank L Oaks; Peter L Lundberg; David Klenerman; Richard Durbin; Anthony J Smith
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962
  9 in total
  15 in total

1.  Characterization of EstB, a novel cold-active and organic solvent-tolerant esterase from marine microorganism Alcanivorax dieselolei B-5(T).

Authors:  Shanshan Zhang; Guojie Wu; Zhixiang Liu; Zongze Shao; Ziduo Liu
Journal:  Extremophiles       Date:  2013-12-07       Impact factor: 2.395

2.  Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.

Authors:  Ping Hu; Eric A Dubinsky; Alexander J Probst; Jian Wang; Christian M K Sieber; Lauren M Tom; Piero R Gardinali; Jillian F Banfield; Ronald M Atlas; Gary L Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

3.  Metagenomic insights into effects of spent engine oil perturbation on the microbial community composition and function in a tropical agricultural soil.

Authors:  Lateef B Salam; Sunday O Obayori; Francisca O Nwaokorie; Aisha Suleiman; Raheemat Mustapha
Journal:  Environ Sci Pollut Res Int       Date:  2017-01-16       Impact factor: 4.223

Review 4.  Ancient Evolution and Recent Evolution Converge for the Biodegradation of Cyanuric Acid and Related Triazines.

Authors:  Jennifer L Seffernick; Lawrence P Wackett
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

5.  Gammaproteobacteria mediating utilization of methyl-, sulfur- and petroleum organic compounds in deep ocean hydrothermal plumes.

Authors:  Zhichao Zhou; Yang Liu; Jie Pan; Brandi R Cron; Brandy M Toner; Karthik Anantharaman; John A Breier; Gregory J Dick; Meng Li
Journal:  ISME J       Date:  2020-08-20       Impact factor: 11.217

6.  Draft Genome Sequence of the Hydrocarbon-Degrading Bacterium Alcanivorax dieselolei KS-293 Isolated from Surface Seawater in the Eastern Mediterranean Sea.

Authors:  Marta Barbato; Francesca Mapelli; Bessem Chouaia; Elena Crotti; Daniele Daffonchio; Sara Borin
Journal:  Genome Announc       Date:  2015-12-10

7.  Genomic and functional analyses of the 2-aminophenol catabolic pathway and partial conversion of its substrate into picolinic acid in Burkholderia xenovorans LB400.

Authors:  Bernardita Chirino; Erwin Strahsburger; Loreine Agulló; Myriam González; Michael Seeger
Journal:  PLoS One       Date:  2013-10-04       Impact factor: 3.240

8.  Enzymes and genes involved in aerobic alkane degradation.

Authors:  Wanpeng Wang; Zongze Shao
Journal:  Front Microbiol       Date:  2013-05-28       Impact factor: 5.640

9.  Biochemical characterization of a haloalkane dehalogenase DadB from Alcanivorax dieselolei B-5.

Authors:  Anzhang Li; Zongze Shao
Journal:  PLoS One       Date:  2014-02-28       Impact factor: 3.240

10.  Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

Authors:  Alberto Scoma; Marta Barbato; Emma Hernandez-Sanabria; Francesca Mapelli; Daniele Daffonchio; Sara Borin; Nico Boon
Journal:  Sci Rep       Date:  2016-03-29       Impact factor: 4.379
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