Literature DB >> 23144408

Complete genome sequence of Corynebacterium pseudotuberculosis Cp31, isolated from an Egyptian buffalo.

Artur Silva1, Rommel Thiago Jucá Ramos, Adriana Ribeiro Carneiro, Anne Cybelle Pinto, Siomar de Castro Soares, Anderson Rodrigues Santos, Sintia Silva Almeida, Luis Carlos Guimarães, Flávia Figueira Aburjaile, Eudes Guilherme Vieira Barbosa, Fernanda Alves Dorella, Flávia Souza Rocha, Thiago Souza Lopes, Regiane Kawasaki, Pablo Gomes Sá, Nilson Antônio da Rocha Coimbra, Louise Teixeira Cerdeira, Maria Silvanira Barbosa, Maria Paula Cruz Schneider, Anderson Miyoshi, Salah Abdel Karim Selim, Mohamed Salah Moawad, Vasco Azevedo.   

Abstract

Corynebacterium pseudotuberculosis is of major veterinary importance because it affects many animal species, causing economically significant livestock diseases and losses. Therefore, the genomic sequencing of various lines of this organism, isolated from different hosts, will aid in the development of diagnostic methods and new prevention and treatment strategies and improve our knowledge of the biology of this microorganism. In this study, we present the genome of C. pseudotuberculosis Cp31, isolated from a buffalo in Egypt.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 23144408      PMCID： PMC3497519          DOI： 10.1128/JB.01782-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  InterProScan--an integration platform for the signature-recognition methods in InterPro.

Authors:  E M Zdobnov; R Apweiler
Journal:  Bioinformatics       Date:  2001-09       Impact factor: 6.937

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.

Authors:  Louise Teixeira Cerdeira; Adriana Ribeiro Carneiro; Rommel Thiago Jucá Ramos; Sintia Silva de Almeida; Vivian D'Afonseca; Maria Paula Cruz Schneider; Jan Baumbach; Andreas Tauch; John Anthony McCulloch; Vasco Ariston Carvalho Azevedo; Artur Silva
Journal:  J Microbiol Methods       Date:  2011-05-18       Impact factor: 2.363

5.  Molecular genotyping of multinational ovine and caprine Corynebacterium pseudotuberculosis isolates using pulsed-field gel electrophoresis.

Authors:  Kathleen M Connor; Michael C Fontaine; Karen Rudge; Graham J Baird; William Donachie
Journal:  Vet Res       Date:  2007-06-13       Impact factor: 3.683

Review 6.  Oedematous skin disease of buffalo in Egypt.

Authors:  S A Selim
Journal:  J Vet Med B Infect Dis Vet Public Health       Date:  2001-05

7.  Small non-coding RNAs in Streptomyces coelicolor.

Authors:  Julia P Swiercz; Jan Bobek; Jan Bobek; Henry J Haiser; Christina Di Berardo; Brian Tjaden; Marie A Elliot
Journal:  Nucleic Acids Res       Date:  2008-11-12       Impact factor: 16.971

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  8 in total
  9 in total

1.  Evaluation of ERIC-PCR as genotyping method for Corynebacterium pseudotuberculosis isolates.

Authors:  Elaine M S Dorneles; Jordana A Santana; Dayana Ribeiro; Fernanda Alves Dorella; Alessandro S Guimarães; Mohamed S Moawad; Salah A Selim; Ana Luiza M Garaldi; Anderson Miyoshi; Márcio G Ribeiro; Aurora M G Gouveia; Vasco Azevedo; Marcos B Heinemann; Andrey P Lage
Journal:  PLoS One       Date:  2014-06-05       Impact factor: 3.240

2.  Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.

Authors:  Marcus Vinicius Canário Viana; Henrique Figueiredo; Rommel Ramos; Luis Carlos Guimarães; Felipe Luiz Pereira; Fernanda Alves Dorella; Salah Abdel Karim Selim; Mohammad Salaheldean; Artur Silva; Alice R Wattam; Vasco Azevedo
Journal:  PLoS One       Date:  2017-04-26       Impact factor: 3.240

3.  Exploration of Nitrate Reductase Metabolic Pathway in Corynebacterium pseudotuberculosis.

Authors:  Sintia Almeida; Cassiana Sousa; Vinícius Abreu; Carlos Diniz; Elaine M S Dorneles; Andrey P Lage; Debmalya Barh; Vasco Azevedo
Journal:  Int J Genomics       Date:  2017-02-20       Impact factor: 2.326

4.  Assessing the Genotypic Differences between Strains of Corynebacterium pseudotuberculosis biovar equi through Comparative Genomics.

Authors:  Rafael A Baraúna; Rommel T J Ramos; Adonney A O Veras; Kenny C Pinheiro; Leandro J Benevides; Marcus V C Viana; Luís C Guimarães; Judy M Edman; Sharon J Spier; Vasco Azevedo; Artur Silva
Journal:  PLoS One       Date:  2017-01-26       Impact factor: 3.240

5.  Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes.

Authors:  Thiago de Jesus Sousa; Doglas Parise; Rodrigo Profeta; Mariana Teixeira Dornelles Parise; Anne Cybelle Pinto Gomide; Rodrigo Bentos Kato; Felipe Luiz Pereira; Henrique Cesar Pereira Figueiredo; Rommel Ramos; Bertram Brenig; Artur Luiz da Costa da Silva; Preetam Ghosh; Debmalya Barh; Aristóteles Góes-Neto; Vasco Azevedo
Journal:  Sci Rep       Date:  2019-11-08       Impact factor: 4.379

6.  Cell envelope of corynebacteria: structure and influence on pathogenicity.

Authors:  Andreas Burkovski
Journal:  ISRN Microbiol       Date:  2013-01-21

7.  The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.

Authors:  Siomar C Soares; Artur Silva; Eva Trost; Jochen Blom; Rommel Ramos; Adriana Carneiro; Amjad Ali; Anderson R Santos; Anne C Pinto; Carlos Diniz; Eudes G V Barbosa; Fernanda A Dorella; Flávia Aburjaile; Flávia S Rocha; Karina K F Nascimento; Luís C Guimarães; Sintia Almeida; Syed S Hassan; Syeda M Bakhtiar; Ulisses P Pereira; Vinicius A C Abreu; Maria P C Schneider; Anderson Miyoshi; Andreas Tauch; Vasco Azevedo
Journal:  PLoS One       Date:  2013-01-14       Impact factor: 3.240

8.  Corynebacterium pseudotuberculosis Pneumonia in a Veterinary Student Infected During Laboratory Work.

Authors:  Lars Heggelund; Peter Gaustad; Othilde Elise Håvelsrud; Jochen Blom; Lars Borgen; Arve Sundset; Henning Sørum; Stig Sophus Frøland
Journal:  Open Forum Infect Dis       Date:  2015-04-15       Impact factor: 3.835

9.  Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002.

Authors:  Diego César Batista Mariano; Thiago de Jesus Sousa; Felipe Luiz Pereira; Flávia Aburjaile; Debmalya Barh; Flávia Rocha; Anne Cybelle Pinto; Syed Shah Hassan; Tessália Diniz Luerce Saraiva; Fernanda Alves Dorella; Alex Fiorini de Carvalho; Carlos Augusto Gomes Leal; Henrique César Pereira Figueiredo; Artur Silva; Rommel Thiago Jucá Ramos; Vasco Ariston Carvalho Azevedo
Journal:  BMC Genomics       Date:  2016-04-30       Impact factor: 3.969
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.