Literature DB >> 23144406

Genome sequence of Borrelia garinii strain NMJW1, isolated from China.

Baogui Jiang1, Hongwu Yao, Yigang Tong, Xiaofeng Yang, Yong Huang, Jiafu Jiang, Wuchun Cao.   

Abstract

We announce the draft genome sequence of Borrelia garinii strain NMJW1, isolated from Ixodes persulcatus in northeastern China. The 902,789-bp linear chromosome (28.4% GC content) contains 813 open reading frames, 33 tRNAs, and 4 complete rRNAs.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 23144406      PMCID： PMC3497544          DOI： 10.1128/JB.01844-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 4.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

5.  Borrelia sinica sp. nov., a lyme disease-related Borrelia species isolated in China.

Authors:  T Masuzawa; N Takada; M Kudeken; T Fukui; Y Yano; F Ishiguro; Y Kawamura; Y Imai; T Ezaki
Journal:  Int J Syst Evol Microbiol       Date:  2001-09       Impact factor: 2.747

6.  Effects of bovine serum albumin on the ability of Barbour-Stoenner-Kelly medium to detect Borrelia burgdorferi.

Authors:  S M Callister; K L Case; W A Agger; R F Schell; R C Johnson; J L Ellingson
Journal:  J Clin Microbiol       Date:  1990-02       Impact factor: 5.948

7.  Variations in Barbour-Stoenner-Kelly culture medium modulate infectivity and pathogenicity of Borrelia burgdorferi clinical isolates.

Authors:  Guiqing Wang; Radha Iyer; Susan Bittker; Denise Cooper; Jennifer Small; Gary P Wormser; Ira Schwartz
Journal:  Infect Immun       Date:  2004-11       Impact factor: 3.441

8.  Delineation of Borrelia burgdorferi sensu lato species by multilocus sequence analysis and confirmation of the delineation of Borrelia spielmanii sp. nov.

Authors:  Dania Richter; Danièle Postic; Natacha Sertour; Ian Livey; Franz-Rainer Matuschka; Guy Baranton
Journal:  Int J Syst Evol Microbiol       Date:  2006-04       Impact factor: 2.747

9.  Comparative analysis of the Borrelia garinii genome.

Authors:  G Glöckner; R Lehmann; A Romualdi; S Pradella; U Schulte-Spechtel; M Schilhabel; B Wilske; J Sühnel; M Platzer
Journal:  Nucleic Acids Res       Date:  2004-11-16       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
View more
  10 in total

Review 1.  Evolutionary genomics of Borrelia burgdorferi sensu lato: findings, hypotheses, and the rise of hybrids.

Authors:  Wei-Gang Qiu; Che L Martin
Journal:  Infect Genet Evol       Date:  2014-04-03       Impact factor: 3.342

2.  Complete genome sequence of Borrelia afzelii K78 and comparative genome analysis.

Authors:  Wolfgang Schüler; Ignas Bunikis; Jacqueline Weber-Lehman; Pär Comstedt; Sabrina Kutschan-Bunikis; Gerold Stanek; Jutta Huber; Andreas Meinke; Sven Bergström; Urban Lundberg
Journal:  PLoS One       Date:  2015-03-23       Impact factor: 3.240

3.  Whole-Genome Sequence of Borrelia garinii Strain 935T Isolated from Ixodes persulcatus in South Korea.

Authors:  Yoontae Noh; Su Yeon Kim; Yeong Seon Lee; Dae-Won Kim; Taesoo Kwon; Kyu-Jam Hwang
Journal:  Genome Announc       Date:  2014-12-24

Review 4.  Emerging tick-borne infections in mainland China: an increasing public health threat.

Authors:  Li-Qun Fang; Kun Liu; Xin-Lou Li; Song Liang; Yang Yang; Hong-Wu Yao; Ruo-Xi Sun; Ye Sun; Wan-Jun Chen; Shu-Qing Zuo; Mai-Juan Ma; Hao Li; Jia-Fu Jiang; Wei Liu; X Frank Yang; Gregory C Gray; Peter J Krause; Wu-Chun Cao
Journal:  Lancet Infect Dis       Date:  2015-10-06       Impact factor: 25.071

5.  Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex.

Authors:  Noémie S Becker; Gabriele Margos; Helmut Blum; Stefan Krebs; Alexander Graf; Robert S Lane; Santiago Castillo-Ramírez; Andreas Sing; Volker Fingerle
Journal:  BMC Genomics       Date:  2016-09-15       Impact factor: 3.969

6.  Genomic and phenotypic characterization of Borrelia afzelii BO23 and Borrelia garinii CIP 103362.

Authors:  Sébastien Bontemps-Gallo; Kevin A Lawrence; Crystal L Richards; Frank C Gherardini
Journal:  PLoS One       Date:  2018-06-26       Impact factor: 3.240

7.  High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis.

Authors:  Noémie S Becker; Robert E Rollins; Kateryna Nosenko; Alexander Paulus; Samantha Martin; Stefan Krebs; Ai Takano; Kozue Sato; Sergey Y Kovalev; Hiroki Kawabata; Volker Fingerle; Gabriele Margos
Journal:  BMC Genomics       Date:  2020-10-08       Impact factor: 3.969

8.  BorreliaBase: a phylogeny-centered browser of Borrelia genomes.

Authors:  Lia Di; Pedro E Pagan; Daniel Packer; Che L Martin; Saymon Akther; Girish Ramrattan; Emmanuel F Mongodin; Claire M Fraser; Steven E Schutzer; Benjamin J Luft; Sherwood R Casjens; Wei-Gang Qiu
Journal:  BMC Bioinformatics       Date:  2014-07-03       Impact factor: 3.169

9.  Genome Sequence of Borrelia garinii Strain SZ, Isolated in China.

Authors:  Qiong Wu; Zhijie Liu; Youquan Li; Guiquan Guan; Qingli Niu; Ze Chen; Jianxun Luo; Hong Yin
Journal:  Genome Announc       Date:  2014-07-17

10.  Genomic Characteristics of Chinese Borrelia burgdorferi Isolates.

Authors:  Qin Hao; Pengcheng Du; Wen Zhang; Xuexia Hou; Lin Zhang; Yuanyuan Zhang; Huixin Liu; Wei Liu; Chen Chen; Kanglin Wan
Journal:  PLoS One       Date:  2016-04-19       Impact factor: 3.240
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.