Literature DB >> 23144399

Draft genome sequence of the antifungal-producing plant-benefiting bacterium Burkholderia pyrrocinia CH-67.

Ju Yeon Song1, Min-Jung Kwak, Kwang Youll Lee, Hyun Gi Kong, Byung Kwon Kim, Soon-Kyeong Kwon, Seon-Woo Lee, Jihyun F Kim.   

Abstract

Burkholderia pyrrocinia CH-67 was isolated from forest soil as a biocontrol agent to be utilized in agriculture. Here, we report the 8.05-Mb draft genome sequence of this bacterium. Its genome contains genes involved in biosynthesis of secondary metabolites and plant growth promotion, which may contribute to probiotic effects on plants.

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Year:  2012        PMID： 23144399      PMCID： PMC3497489          DOI： 10.1128/JB.01779-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Scaffolding pre-assembled contigs using SSPACE.

Authors:  Marten Boetzer; Christiaan V Henkel; Hans J Jansen; Derek Butler; Walter Pirovano
Journal:  Bioinformatics       Date:  2010-12-12       Impact factor: 6.937

2.  Metabolic profiling of Burkholderia cenocepacia, Burkholderia ambifaria, and Burkholderia pyrrocinia isolates from maize rhizosphere.

Authors:  Chiara Alisi; Giovanna Jona Lasinio; Claudia Dalmastri; AnnaRosa Sprocati; Silvia Tabacchioni; Annamaria Bevivino; Luigi Chiarini
Journal:  Microb Ecol       Date:  2005-11-25       Impact factor: 4.552

3.  Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps.

Authors:  Isheng J Tsai; Thomas D Otto; Matthew Berriman
Journal:  Genome Biol       Date:  2010-04-13       Impact factor: 13.583

Review 4.  Common features of environmental and potentially beneficial plant-associated Burkholderia.

Authors:  Zulma Rocío Suárez-Moreno; Jesús Caballero-Mellado; Bruna G Coutinho; Lucia Mendonça-Previato; Euan K James; Vittorio Venturi
Journal:  Microb Ecol       Date:  2011-08-18       Impact factor: 4.552

5.  Complete genome sequence of the endophytic bacterium Burkholderia sp. strain KJ006.

Authors:  Min-Jung Kwak; Ju Yeon Song; Seon-Young Kim; Haeyoung Jeong; Sung Gyun Kang; Byung Kwon Kim; Soon-Kyeong Kwon; Choong Hoon Lee; Dong Su Yu; Seung-Hwan Park; Jihyun F Kim
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

Review 6.  Diversity and significance of Burkholderia species occupying diverse ecological niches.

Authors:  Tom Coenye; Peter Vandamme
Journal:  Environ Microbiol       Date:  2003-09       Impact factor: 5.491

7.  ACC (1-aminocyclopropane-1-carboxylate) deaminase activity, a widespread trait in Burkholderia species, and its growth-promoting effect on tomato plants.

Authors:  Janette Onofre-Lemus; Ismael Hernández-Lucas; Lourdes Girard; Jesús Caballero-Mellado
Journal:  Appl Environ Microbiol       Date:  2009-08-21       Impact factor: 4.792

8.  Production of the antifungal compound pyrrolnitrin is quorum sensing-regulated in members of the Burkholderia cepacia complex.

Authors:  Silvia Schmidt; Judith F Blom; Jakob Pernthaler; Gabriele Berg; Adam Baldwin; Eshwar Mahenthiralingam; Leo Eberl
Journal:  Environ Microbiol       Date:  2009-02-10       Impact factor: 5.491

9.  Toward almost closed genomes with GapFiller.

Authors:  Marten Boetzer; Walter Pirovano
Journal:  Genome Biol       Date:  2012-06-25       Impact factor: 13.583

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  5 in total

1.  Draft Genome Sequence of Broad-Spectrum Antifungal Bacterium Burkholderia gladioli Strain NGJ1, Isolated from Healthy Rice Seeds.

Authors:  Gopaljee Jha; Isha Tyagi; Rajeev Kumar; Srayan Ghosh
Journal:  Genome Announc       Date:  2015-07-23

2.  Draft Genome Sequence of Burkholderia pyrrocinia Lyc2, a Biological Control Strain That Can Suppress Multiple Plant Microbial Pathogens.

Authors:  Xiao-Qiang Wang; Kurt C Showmaker; Xiao-Qing Yu; Tao Bi; Chuan-Yu Hsu; Sonya M Baird; Daniel G Peterson; Xiang-Dong Li; Shi-En Lu
Journal:  Genome Announc       Date:  2014-10-02

3.  Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species.

Authors:  Amandeep Sawana; Mobolaji Adeolu; Radhey S Gupta
Journal:  Front Genet       Date:  2014-12-19       Impact factor: 4.599

4.  Draft Genome Sequence of Burkholderia sp. Strain MP-1, a Methyl Parathion (MP)-Degrading Bacterium from MP-Contaminated Soil.

Authors:  Xu-Yun Liu; Xiao-Jing Luo; Chun-Xiu Li; Qi-Liang Lai; Jian-He Xu
Journal:  Genome Announc       Date:  2014-05-22

5.  Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium.

Authors:  Aryan Rahimi-Midani; Kyoung-Ho Kim; Seon-Woo Lee; Sang Bong Jung; Tae-Jin Choi
Journal:  Plant Pathol J       Date:  2016-12-01       Impact factor: 1.795
  5 in total

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