Literature DB >> 22843575

Complete genome sequence of the endophytic bacterium Burkholderia sp. strain KJ006.

Min-Jung Kwak1, Ju Yeon Song, Seon-Young Kim, Haeyoung Jeong, Sung Gyun Kang, Byung Kwon Kim, Soon-Kyeong Kwon, Choong Hoon Lee, Dong Su Yu, Seung-Hwan Park, Jihyun F Kim.   

Abstract

Endophytes live inside plant tissues without causing any harm and may even benefit plants. Here, we provide the high-quality genome sequence of Burkholderia sp. strain KJ006, an endophytic bacterium of rice with antifungal activity. The 6.6-Mb genome, consisting of three chromosomes and a single plasmid, contains genes related to plant growth promotion or degradation of aromatic compounds.

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Year:  2012        PMID： 22843575      PMCID： PMC3416244          DOI： 10.1128/JB.00821-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

Review 1.  Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales.

Authors:  Danilo Pérez-Pantoja; Raúl Donoso; Loreine Agulló; Macarena Córdova; Michael Seeger; Dietmar H Pieper; Bernardo González
Journal:  Environ Microbiol       Date:  2011-10-26       Impact factor: 5.491

2.  Endofungal bacterium controls its host by an hrp type III secretion system.

Authors:  Gerald Lackner; Nadine Moebius; Christian Hertweck
Journal:  ISME J       Date:  2010-08-19       Impact factor: 10.302

3.  Scaffolding pre-assembled contigs using SSPACE.

Authors:  Marten Boetzer; Christiaan V Henkel; Hans J Jansen; Derek Butler; Walter Pirovano
Journal:  Bioinformatics       Date:  2010-12-12       Impact factor: 6.937

4.  Recent progress of microbial genome projects in Korea.

Authors:  Haeyoung Jeong; Sung Ho Yoon; Dong-Su Yu; Tae-Kwang Oh; Jihyun F Kim
Journal:  Biotechnol J       Date:  2008-05       Impact factor: 4.677

5.  Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps.

Authors:  Isheng J Tsai; Thomas D Otto; Matthew Berriman
Journal:  Genome Biol       Date:  2010-04-13       Impact factor: 13.583

6.  Interference of quorum sensing and virulence of the rice pathogen Burkholderia glumae by an engineered endophytic bacterium.

Authors:  Hyun-Soo Cho; Soo-Young Park; Choong-Min Ryu; Jihyun F Kim; Jong-Guk Kim; Seung-Hwan Park
Journal:  FEMS Microbiol Ecol       Date:  2007-02-22       Impact factor: 4.194

7.  Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants.

Authors:  Denise K Zinniel; Pat Lambrecht; N Beth Harris; Zhengyu Feng; Daniel Kuczmarski; Phyllis Higley; Carol A Ishimaru; Alahari Arunakumari; Raúl G Barletta; Anne K Vidaver
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

8.  Genome sequence of the plant growth promoting endophytic bacterium Enterobacter sp. 638.

Authors:  Safiyh Taghavi; Daniel van der Lelie; Adam Hoffman; Yian-Biao Zhang; Michael D Walla; Jaco Vangronsveld; Lee Newman; Sébastien Monchy
Journal:  PLoS Genet       Date:  2010-05-13       Impact factor: 5.917

9.  Shifting the genomic gold standard for the prokaryotic species definition.

Authors:  Michael Richter; Ramon Rosselló-Móra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-23       Impact factor: 11.205

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  8 in total

1.  Draft genome sequence of the antifungal-producing plant-benefiting bacterium Burkholderia pyrrocinia CH-67.

Authors:  Ju Yeon Song; Min-Jung Kwak; Kwang Youll Lee; Hyun Gi Kong; Byung Kwon Kim; Soon-Kyeong Kwon; Seon-Woo Lee; Jihyun F Kim
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

Review 2.  The influence of endophytes on rice fitness under environmental stresses.

Authors:  Showkat Ahmad Ganie; Javaid Akhter Bhat; Alessandra Devoto
Journal:  Plant Mol Biol       Date:  2021-12-02       Impact factor: 4.335

3.  Draft Genome Sequence of Burkholderia pyrrocinia Lyc2, a Biological Control Strain That Can Suppress Multiple Plant Microbial Pathogens.

Authors:  Xiao-Qiang Wang; Kurt C Showmaker; Xiao-Qing Yu; Tao Bi; Chuan-Yu Hsu; Sonya M Baird; Daniel G Peterson; Xiang-Dong Li; Shi-En Lu
Journal:  Genome Announc       Date:  2014-10-02

4.  Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species.

Authors:  Amandeep Sawana; Mobolaji Adeolu; Radhey S Gupta
Journal:  Front Genet       Date:  2014-12-19       Impact factor: 4.599

Review 5.  Understanding pine wilt disease: roles of the pine endophytic bacteria and of the bacteria carried by the disease-causing pinewood nematode.

Authors:  Diogo N Proença; Gregor Grass; Paula V Morais
Journal:  Microbiologyopen       Date:  2016-10-26       Impact factor: 3.139

6.  Bacterial endophyte communities in the foliage of coast redwood and giant sequoia.

Authors:  Alyssa A Carrell; Anna C Frank
Journal:  Front Microbiol       Date:  2015-09-22       Impact factor: 5.640

Review 7.  "Omics" Tools for Better Understanding the Plant-Endophyte Interactions.

Authors:  Sanjana Kaul; Tanwi Sharma; Manoj K Dhar
Journal:  Front Plant Sci       Date:  2016-06-29       Impact factor: 5.753

8.  Computational Identification and Comparative Analysis of Secreted and Transmembrane Proteins in Six Burkholderia Species.

Authors:  Thao Thi Nguyen; Hyun-Hee Lee; Jungwook Park; Inmyoung Park; Young-Su Seo
Journal:  Plant Pathol J       Date:  2017-04-01       Impact factor: 1.795
  8 in total

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