Literature DB >> 23142499

Applications of small-angle X-ray scattering to biomacromolecular solutions.

Maxim V Petoukhov1, Dmitri I Svergun.   

Abstract

Small-angle scattering of X-rays (SAXS) is an established method for low-resolution structural characterization of biological macromolecules in solution. Being complementary to the high resolution methods (X-ray crystallography and NMR), SAXS is often used in combination with them. The technique provides overall three-dimensional structures using ab initio reconstructions and hybrid modeling, and allows one to quantitatively characterize equilibrium mixtures as well as flexible systems. Recent progress in SAXS instrumentation, most notably, high brilliance synchrotron sources, has paved the way for high throughput automated SAXS studies allowing screening of external conditions (pH, temperature, ligand binding etc.). The modern approaches for SAXS data analysis are presented in this review including rapid characterization of macromolecular solutions in terms of low-resolution shapes, validation of high-resolution models in close-to-native conditions, quaternary structure analysis of complexes and quantitative description of the oligomeric composition in mixtures. Practical aspects of SAXS as a standalone tool and its combinations with other structural, biophysical or bioinformatics methods are reviewed. The capabilities of the technique are illustrated by a selection of recent applications for the studies of biological molecules. Future perspectives on SAXS and its potential impact to structural molecular biology are discussed.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23142499     DOI: 10.1016/j.biocel.2012.10.017

Source DB:  PubMed          Journal:  Int J Biochem Cell Biol        ISSN: 1357-2725            Impact factor:   5.085


  38 in total

1.  Methods for analysis of size-exclusion chromatography-small-angle X-ray scattering and reconstruction of protein scattering.

Authors:  Andrew W Malaby; Srinivas Chakravarthy; Thomas C Irving; Sagar V Kathuria; Osman Bilsel; David G Lambright
Journal:  J Appl Crystallogr       Date:  2015-07-08       Impact factor: 3.304

2.  Constrained Maximum Likelihood Estimation of Relative Abundances of Protein Conformation in a Heterogeneous Mixture from Small Angle X-Ray Scattering Intensity Measurements.

Authors:  A Emre Onuk; Murat Akcakaya; Jaydeep P Bardhan; Deniz Erdogmus; Dana H Brooks; Lee Makowski
Journal:  IEEE Trans Signal Process       Date:  2015-07-13       Impact factor: 4.931

3.  Salt Dependence of A-Form RNA Duplexes: Structures and Implications.

Authors:  Yen-Lin Chen; Lois Pollack
Journal:  J Phys Chem B       Date:  2019-11-11       Impact factor: 2.991

4.  Structure of Dimeric and Tetrameric Complexes of the BAR Domain Protein PICK1 Determined by Small-Angle X-Ray Scattering.

Authors:  Morten L Karlsen; Thor S Thorsen; Niklaus Johner; Ina Ammendrup-Johnsen; Simon Erlendsson; Xinsheng Tian; Jens B Simonsen; Rasmus Høiberg-Nielsen; Nikolaj M Christensen; George Khelashvili; Werner Streicher; Kaare Teilum; Bente Vestergaard; Harel Weinstein; Ulrik Gether; Lise Arleth; Kenneth L Madsen
Journal:  Structure       Date:  2015-06-11       Impact factor: 5.006

Review 5.  Techniques for physicochemical characterization of nanomaterials.

Authors:  Ping-Chang Lin; Stephen Lin; Paul C Wang; Rajagopalan Sridhar
Journal:  Biotechnol Adv       Date:  2013-11-16       Impact factor: 14.227

6.  The solution structure of the transducin-α-uncoordinated 119 protein complex suggests occlusion of the Gβ₁γ₁-binding sites.

Authors:  Pallavi Cheguru; Anurima Majumder; Ravi Yadav; Kota N Gopalakrishna; Lokesh Gakhar; Nikolai O Artemyev
Journal:  FEBS J       Date:  2014-12-12       Impact factor: 5.542

7.  Preparing monodisperse macromolecular samples for successful biological small-angle X-ray and neutron-scattering experiments.

Authors:  Cy M Jeffries; Melissa A Graewert; Clément E Blanchet; David B Langley; Andrew E Whitten; Dmitri I Svergun
Journal:  Nat Protoc       Date:  2016-10-06       Impact factor: 13.491

8.  Site-Specific Modulation of Charge Controls the Structure and Stimulus Responsiveness of Intrinsically Disordered Peptide Brushes.

Authors:  Maniraj Bhagawati; Matt G Rubashkin; Jessica P Lee; Badriprasad Ananthanarayanan; Valerie M Weaver; Sanjay Kumar
Journal:  Langmuir       Date:  2016-06-02       Impact factor: 3.882

9.  Biochemical Characterization and Low-Resolution SAXS Molecular Envelope of GH1 β-Glycosidase from Saccharophagus degradans.

Authors:  Hevila Brognaro; Vitor Medeiros Almeida; Evandro Ares de Araujo; Vasily Piyadov; Maria Auxiliadora Morim Santos; Sandro Roberto Marana; Igor Polikarpov
Journal:  Mol Biotechnol       Date:  2016-12       Impact factor: 2.695

10.  SAXS structural study of PrP(Sc) reveals ~11 nm diameter of basic double intertwined fibers.

Authors:  Heinz Amenitsch; Federico Benetti; Adriana Ramos; Giuseppe Legname; Jesús R Requena
Journal:  Prion       Date:  2013-11-18       Impact factor: 3.931

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