Literature DB >> 26073603

Structure of Dimeric and Tetrameric Complexes of the BAR Domain Protein PICK1 Determined by Small-Angle X-Ray Scattering.

Morten L Karlsen1, Thor S Thorsen1, Niklaus Johner2, Ina Ammendrup-Johnsen1, Simon Erlendsson1,3, Xinsheng Tian4, Jens B Simonsen5, Rasmus Høiberg-Nielsen5, Nikolaj M Christensen1, George Khelashvili2, Werner Streicher6, Kaare Teilum3, Bente Vestergaard4, Harel Weinstein2, Ulrik Gether1, Lise Arleth5, Kenneth L Madsen1.   

Abstract

PICK1 is a neuronal scaffolding protein containing a PDZ domain and an auto-inhibited BAR domain. BAR domains are membrane-sculpting protein modules generating membrane curvature and promoting membrane fission. Previous data suggest that BAR domains are organized in lattice-like arrangements when stabilizing membranes but little is known about structural organization of BAR domains in solution. Through a small-angle X-ray scattering (SAXS) analysis, we determine the structure of dimeric and tetrameric complexes of PICK1 in solution. SAXS and biochemical data reveal a strong propensity of PICK1 to form higher-order structures, and SAXS analysis suggests an offset, parallel mode of BAR-BAR oligomerization. Furthermore, unlike accessory domains in other BAR domain proteins, the positioning of the PDZ domains is flexible, enabling PICK1 to perform long-range, dynamic scaffolding of membrane-associated proteins. Together with functional data, these structural findings are compatible with a model in which oligomerization governs auto-inhibition of BAR domain function.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26073603      PMCID: PMC4502314          DOI: 10.1016/j.str.2015.04.020

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  43 in total

1.  Targeted in vivo mutations of the AMPA receptor subunit GluR2 and its interacting protein PICK1 eliminate cerebellar long-term depression.

Authors:  Jordan P Steinberg; Kogo Takamiya; Ying Shen; Jun Xia; Maria E Rubio; Sandy Yu; Wenying Jin; Gareth M Thomas; David J Linden; Richard L Huganir
Journal:  Neuron       Date:  2006-03-16       Impact factor: 17.173

2.  Crystal structures of the BAR-PH and PTB domains of human APPL1.

Authors:  Jiang Li; Xuming Mao; Lily Q Dong; Feng Liu; Liang Tong
Journal:  Structure       Date:  2007-05       Impact factor: 5.006

3.  PACSIN 1 forms tetramers via its N-terminal F-BAR domain.

Authors:  Arndt Halbach; Matthias Mörgelin; Maria Baumgarten; Mark Milbrandt; Mats Paulsson; Markus Plomann
Journal:  FEBS J       Date:  2007-02       Impact factor: 5.542

4.  Specific interaction of the PDZ domain protein PICK1 with the COOH terminus of protein kinase C-alpha.

Authors:  J Staudinger; J Lu; E N Olson
Journal:  J Biol Chem       Date:  1997-12-19       Impact factor: 5.157

5.  Molecular determinants for the complex binding specificity of the PDZ domain in PICK1.

Authors:  Kenneth L Madsen; Thijs Beuming; Masha Y Niv; Chiun-Wen Chang; Kumlesh K Dev; Harel Weinstein; Ulrik Gether
Journal:  J Biol Chem       Date:  2005-03-17       Impact factor: 5.157

6.  The aggregation behavior of zinc-free insulin studied by small-angle neutron scattering.

Authors:  J S Pedersen; S Hansen; R Bauer
Journal:  Eur Biophys J       Date:  1994       Impact factor: 1.733

7.  Proteins in 6-M guanidine hydrochloride. Demonstration of random coil behavior.

Authors:  C Tanford; K Kawahara; S Lapanje
Journal:  J Biol Chem       Date:  1966-04-25       Impact factor: 5.157

8.  PICK1 interacts with ABP/GRIP to regulate AMPA receptor trafficking.

Authors:  Wei Lu; Edward B Ziff
Journal:  Neuron       Date:  2005-08-04       Impact factor: 17.173

9.  Clustering of AMPA receptors by the synaptic PDZ domain-containing protein PICK1.

Authors:  J Xia; X Zhang; J Staudinger; R L Huganir
Journal:  Neuron       Date:  1999-01       Impact factor: 17.173

10.  Lipid binding regulates synaptic targeting of PICK1, AMPA receptor trafficking, and synaptic plasticity.

Authors:  Wenying Jin; Woo-Ping Ge; Junyu Xu; Mian Cao; Lisheng Peng; Wingho Yung; Dezhi Liao; Shumin Duan; Mingjie Zhang; Jun Xia
Journal:  J Neurosci       Date:  2006-03-01       Impact factor: 6.167

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  17 in total

1.  The BAR domain of the Arf GTPase-activating protein ASAP1 directly binds actin filaments.

Authors:  Pei-Wen Chen; Neil Billington; Ben Y Maron; Jeffrey A Sload; Krishna Chinthalapudi; Sarah M Heissler
Journal:  J Biol Chem       Date:  2020-05-22       Impact factor: 5.157

2.  Ca 2+ Regulates Dimerization of the BAR Domain Protein PICK1 and Consequent Membrane Curvature.

Authors:  Georgiana F Stan; Deborah K Shoemark; Dominic Alibhai; Jonathan G Hanley
Journal:  Front Mol Neurosci       Date:  2022-06-02       Impact factor: 6.261

3.  The Challenges of Polydisperse SAXS Data Analysis: Two SAXS Studies of PICK1 Produce Different Structural Models.

Authors:  Malgorzata Boczkowska; Grzegorz Rebowski; Roberto Dominguez
Journal:  Structure       Date:  2015-11-03       Impact factor: 5.006

Review 4.  Deciphering the BAR code of membrane modulators.

Authors:  Ulrich Salzer; Julius Kostan; Kristina Djinović-Carugo
Journal:  Cell Mol Life Sci       Date:  2017-02-27       Impact factor: 9.261

Review 5.  PDZ Domains as Drug Targets.

Authors:  Nikolaj R Christensen; Jelena Čalyševa; Eduardo F A Fernandes; Susanne Lüchow; Louise S Clemmensen; Linda M Haugaard-Kedström; Kristian Strømgaard
Journal:  Adv Ther (Weinh)       Date:  2019-04-24

6.  ACAP1 assembles into an unusual protein lattice for membrane deformation through multiple stages.

Authors:  Chun Chan; Xiaoyun Pang; Yan Zhang; Tongxin Niu; Shengjiang Yang; Daohui Zhao; Jian Li; Lanyuan Lu; Victor W Hsu; Jian Zhou; Fei Sun; Jun Fan
Journal:  PLoS Comput Biol       Date:  2019-07-10       Impact factor: 4.475

Review 7.  Membrane Binding and Modulation of the PDZ Domain of PICK1.

Authors:  Simon Erlendsson; Kenneth Lindegaard Madsen
Journal:  Membranes (Basel)       Date:  2015-10-16

8.  Arc/Arg3.1 has an activity-regulated interaction with PICK1 that results in altered spatial dynamics.

Authors:  Brandee M S S Goo; Bethany J Sanstrum; Diana Z Y Holden; Yi Yu; Nicholas G James
Journal:  Sci Rep       Date:  2018-10-02       Impact factor: 4.379

9.  The Regulation of AMPA Receptor Endocytosis by Dynamic Protein-Protein Interactions.

Authors:  Jonathan G Hanley
Journal:  Front Cell Neurosci       Date:  2018-10-11       Impact factor: 5.505

10.  Mechanisms of PDZ domain scaffold assembly illuminated by use of supported cell membrane sheets.

Authors:  Simon Erlendsson; Thor Seneca Thorsen; Georges Vauquelin; Ina Ammendrup-Johnsen; Volker Wirth; Karen L Martinez; Kaare Teilum; Ulrik Gether; Kenneth Lindegaard Madsen
Journal:  Elife       Date:  2019-01-03       Impact factor: 8.140

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