Literature DB >> 23135638

Pearls are novel Cajal body-like structures in the Xenopus germinal vesicle that are dependent on RNA pol III transcription.

Zehra F Nizami1, Joseph G Gall.   

Abstract

We have identified novel nuclear bodies, which we call pearls, in the giant oocyte nuclei of Xenopus laevis and Xenopus tropicalis. Pearls are attached to the lampbrush chromosomes at specific loci that are transcribed by RNA polymerase III, and they disappear after inhibition of polymerase III activity. Pearls are enriched for small Cajal body-specific RNAs (scaRNAs), which are guide RNAs that modify specific nucleotides on splicing snRNAs. Surprisingly, snRNAs themselves are not present in pearls, suggesting that pearls are not functionally equivalent to Cajal bodies in other systems, which contain both snRNAs and scaRNAs. We suggest that pearls may function in the processing of RNA polymerase III transcripts, such as tRNA, 5S rRNA, and other short non-coding RNAs.

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Year:  2012        PMID: 23135638      PMCID: PMC3566365          DOI: 10.1007/s10577-012-9320-1

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  69 in total

1.  RNA polymerase III transcripts and the PTB protein are essential for the integrity of the perinucleolar compartment.

Authors:  Chen Wang; Joan C Politz; Thoru Pederson; Sui Huang
Journal:  Mol Biol Cell       Date:  2003-06       Impact factor: 4.138

2.  Non-canonical Cajal bodies form in the nucleus of late stage avian oocytes lacking functional nucleolus.

Authors:  Tatiana Khodyuchenko; Elena Gaginskaya; Alla Krasikova
Journal:  Histochem Cell Biol       Date:  2012-03-02       Impact factor: 4.304

3.  U2 and U1 snRNA gene loci associate with coiled bodies.

Authors:  K P Smith; K C Carter; C V Johnson; J B Lawrence
Journal:  J Cell Biochem       Date:  1995-12       Impact factor: 4.429

4.  Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis.

Authors:  Magdalena Strzelecka; Simon Trowitzsch; Gert Weber; Reinhard Lührmann; Andrew C Oates; Karla M Neugebauer
Journal:  Nat Struct Mol Biol       Date:  2010-03-28       Impact factor: 15.369

5.  A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs.

Authors:  Patricia Richard; Xavier Darzacq; Edouard Bertrand; Beáta E Jády; Céline Verheggen; Tamás Kiss
Journal:  EMBO J       Date:  2003-08-15       Impact factor: 11.598

6.  The stem-loop binding protein (SLBP1) is present in coiled bodies of the Xenopus germinal vesicle.

Authors:  J Abbott; W F Marzluff; J G Gall
Journal:  Mol Biol Cell       Date:  1999-02       Impact factor: 4.138

7.  Heat shock induces mini-Cajal bodies in the Xenopus germinal vesicle.

Authors:  Korie E Handwerger; Zheng'an Wu; Christine Murphy; Joseph G Gall
Journal:  J Cell Sci       Date:  2002-05-15       Impact factor: 5.285

8.  Small nuclear ribonucleoproteins and heterogeneous nuclear ribonucleoproteins in the amphibian germinal vesicle: loops, spheres, and snurposomes.

Authors:  Z A Wu; C Murphy; H G Callan; J G Gall
Journal:  J Cell Biol       Date:  1991-05       Impact factor: 10.539

9.  Steady-state dynamics of Cajal body components in the Xenopus germinal vesicle.

Authors:  Korie E Handwerger; Christine Murphy; Joseph G Gall
Journal:  J Cell Biol       Date:  2003-02-17       Impact factor: 10.539

10.  Internal modification of U2 small nuclear (sn)RNA occurs in nucleoli of Xenopus oocytes.

Authors:  Y T Yu; M D Shu; A Narayanan; R M Terns; M P Terns; J A Steitz
Journal:  J Cell Biol       Date:  2001-03-19       Impact factor: 10.539

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  10 in total

1.  The role of nuclear bodies in gene expression and disease.

Authors:  Marie Morimoto; Cornelius F Boerkoel
Journal:  Biology (Basel)       Date:  2013-07-09

2.  Reorganization of actin filaments by ADF/cofilin is involved in formation of microtubule structures during Xenopus oocyte maturation.

Authors:  Yuka Yamagishi; Hiroshi Abe
Journal:  Mol Biol Cell       Date:  2015-09-30       Impact factor: 4.138

3.  Low-voltage scanning electron microscopy study of lampbrush chromosomes and nuclear bodies in avian and amphibian oocytes.

Authors:  Tatiana Kulikova; Tatiana Khodyuchenko; Yuri Petrov; Alla Krasikova
Journal:  Sci Rep       Date:  2016-11-18       Impact factor: 4.379

4.  scaRNAs and snoRNAs: Are they limited to specific classes of substrate RNAs?

Authors:  Svetlana Deryusheva; Joseph G Gall
Journal:  RNA       Date:  2018-10-09       Impact factor: 4.942

5.  Characterization of axolotl lampbrush chromosomes by fluorescence in situ hybridization and immunostaining.

Authors:  Melissa C Keinath; Asya Davidian; Vladimir Timoshevskiy; Nataliya Timoshevskaya; Joseph G Gall
Journal:  Exp Cell Res       Date:  2021-03-03       Impact factor: 3.905

6.  Phosphorylation regulates coilin activity and RNA association.

Authors:  Hanna J Broome; Zunamys I Carrero; Heather E Douglas; Michael D Hebert
Journal:  Biol Open       Date:  2013-02-26       Impact factor: 2.422

7.  Amyloids assemble as part of recognizable structures during oogenesis in Xenopus.

Authors:  Michael H Hayes; Daniel L Weeks
Journal:  Biol Open       Date:  2016-06-15       Impact factor: 2.422

8.  Imaging the dynamics of transcription loops in living chromosomes.

Authors:  Garry T Morgan
Journal:  Chromosoma       Date:  2018-04-03       Impact factor: 4.316

9.  DIP1 modulates stem cell homeostasis in Drosophila through regulation of sisR-1.

Authors:  Jing Ting Wong; Farzanah Akhbar; Amanda Yunn Ee Ng; Mandy Li-Ian Tay; Gladys Jing En Loi; Jun Wei Pek
Journal:  Nat Commun       Date:  2017-10-02       Impact factor: 14.919

Review 10.  Identification of Genomic Loci Responsible for the Formation of Nuclear Domains Using Lampbrush Chromosomes.

Authors:  Alla Krasikova; Tatiana Kulikova
Journal:  Noncoding RNA       Date:  2019-12-25
  10 in total

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