Literature DB >> 23132714

Molecular dynamics and free energy of binding of oleic acid to DNA in aqueous solutions.

D S Tarasov1, M Y Ibragimova, E D Izotova, N I Akberova, R I Zhdanov.   

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Year:  2012        PMID： 23132714     DOI： 10.1134/S1607672912050043

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN： 1607-6729            Impact factor:   0.788


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  9 in total

1.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

2.  Exploring Multidimensional Free Energy Landscapes Using Time-Dependent Biases on Collective Variables.

Authors:  Jérome Hénin; Giacomo Fiorin; Christophe Chipot; Michael L Klein
Journal:  J Chem Theory Comput       Date:  2009-12-03       Impact factor: 6.006

3.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

4.  Adaptive biasing force method for scalar and vector free energy calculations.

Authors:  Eric Darve; David Rodríguez-Gómez; Andrew Pohorille
Journal:  J Chem Phys       Date:  2008-04-14       Impact factor: 3.488

5.  DNA-phospholipid recognition: modulation by metal ion and lipid nature. Complexes structure and stability calculated by molecular mechanics.

Authors:  P N D'yachkov; B B Fedorov; R Bischoff; G Bischoff; R I Zhdanov
Journal:  Bioelectrochemistry       Date:  2002-11       Impact factor: 5.373

6.  Lipid--DNA interactions. II. Phospholipids, cholesterol, glycerophosphorylcholine, spingosine and fatty acids.

Authors:  F A Manzoli; J H Muchmore; B Bonora; S Capitani; S Bartoli
Journal:  Biochim Biophys Acta       Date:  1974-02-27

7.  Nature of DNA-bound fatty acids in Pseudomonas aurantiaca.

Authors:  Renat I Zhdanov; Anastasia S Shmyrina; Tatyana V Zarubina; Andrey L Mulyukin; Galina I El-Registan; Nicole Haupt; Angelika Kraus; Wilhelm Lorenz
Journal:  FEMS Microbiol Lett       Date:  2006-09-21       Impact factor: 2.742

8.  Molecular dynamics simulations and free energy calculations of netropsin and distamycin binding to an AAAAA DNA binding site.

Authors:  Jozica Dolenc; Chris Oostenbrink; Joze Koller; Wilfred F van Gunsteren
Journal:  Nucleic Acids Res       Date:  2005-02-01       Impact factor: 16.971

9.  Crystallographic refinement of ligand complexes.

Authors:  Gerard J Kleywegt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-12-13
  9 in total

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