Literature DB >> 23132079

Lipid monolayer and sparse matrix screening for growing two-dimensional crystals for electron crystallography: methods and examples.

Mark Yeager1, Kelly A Dryden, Barbie K Ganser-Pornillos.   

Abstract

Electron microscopy provides an efficient method for rapidly assessing whether a solution of macromolecules is homogeneous and monodisperse. If the macromolecules can be induced to form two-dimensional crystals that are a single layer in thickness, then electron crystallography of frozen-hydrated crystals has the potential of achieving three-dimensional density maps at sub-nanometer or even atomic resolution. Here we describe the lipid monolayer and sparse matrix screening methods for growing two-dimensional crystals and present successful applications to soluble macromolecular complexes: carboxysome shell proteins and HIV CA, respectively. Since it is common to express recombinant proteins with poly-His tags for purification by metal affinity chromatography, the monolayer technique using bulk lipids doped with Ni(2+) lipids has the potential for broad application. Likewise, the sparse matrix method uses screening conditions for three-dimensional crystallization and is therefore of broad applicability.

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Year:  2013        PMID: 23132079      PMCID: PMC4127334          DOI: 10.1007/978-1-62703-176-9_28

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  16 in total

1.  Two-dimensional crystallization of a membrane protein on a detergent-resistant lipid monolayer.

Authors:  L Lebeau; F Lach; C Vénien-Bryan; A Renault; J Dietrich; T Jahn; M G Palmgren; W Kühlbrandt; C Mioskowski
Journal:  J Mol Biol       Date:  2001-05-11       Impact factor: 5.469

2.  Structural analysis of membrane-bound retrovirus capsid proteins.

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Journal:  EMBO J       Date:  1997-03-17       Impact factor: 11.598

3.  Three-dimensional structure of the M-MuLV CA protein on a lipid monolayer: a general model for retroviral capsid assembly.

Authors:  Barbie K Ganser; Anchi Cheng; Wesley I Sundquist; Mark Yeager
Journal:  EMBO J       Date:  2003-06-16       Impact factor: 11.598

4.  Assembly of Acanthamoeba myosin-II minifilaments. Model of anti-parallel dimers based on EM and X-ray diffraction of 2D and 3D crystals.

Authors:  Kirsi Turbedsky; Thomas D Pollard; Mark Yeager
Journal:  J Mol Biol       Date:  2005-01-14       Impact factor: 5.469

5.  Three-dimensional structure of cholera toxin penetrating a lipid membrane.

Authors:  H O Ribi; D S Ludwig; K L Mercer; G K Schoolnik; R D Kornberg
Journal:  Science       Date:  1988-03-11       Impact factor: 47.728

6.  A novel method for transfer of two-dimensional crystals from the air/water interface to specimen grids. EM sample preparation/lipid-layer crystallization.

Authors:  F J Asturias; R D Kornberg
Journal:  J Struct Biol       Date:  1995 Jan-Feb       Impact factor: 2.867

7.  The mechanism of protein crystal growth from lipid layers.

Authors:  S A Hemming; A Bochkarev; S A Darst; R D Kornberg; P Ala; D S Yang; A M Edwards
Journal:  J Mol Biol       Date:  1995-02-17       Impact factor: 5.469

Review 8.  Two-dimensional crystallization of proteins on planar lipid films and structure determination by electron crystallography.

Authors:  A Brisson; A Olofsson; P Ringler; M Schmutz; S Stoylova
Journal:  Biol Cell       Date:  1994       Impact factor: 4.458

9.  Two-dimensional crystals of streptavidin on biotinylated lipid layers and their interactions with biotinylated macromolecules.

Authors:  S A Darst; M Ahlers; P H Meller; E W Kubalek; R Blankenburg; H O Ribi; H Ringsdorf; R D Kornberg
Journal:  Biophys J       Date:  1991-02       Impact factor: 4.033

10.  Two-dimensional crystallization of histidine-tagged, HIV-1 reverse transcriptase promoted by a novel nickel-chelating lipid.

Authors:  E W Kubalek; S F Le Grice; P O Brown
Journal:  J Struct Biol       Date:  1994 Sep-Oct       Impact factor: 2.867

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  2 in total

1.  Organization of Farnesylated, Carboxymethylated KRAS4B on Membranes.

Authors:  Eric Barklis; Andrew G Stephen; August O Staubus; Robin Lid Barklis; Ayna Alfadhli
Journal:  J Mol Biol       Date:  2019-07-19       Impact factor: 5.469

2.  Crystal structure of an HIV assembly and maturation switch.

Authors:  Jonathan M Wagner; Kaneil K Zadrozny; Jakub Chrustowicz; Michael D Purdy; Mark Yeager; Barbie K Ganser-Pornillos; Owen Pornillos
Journal:  Elife       Date:  2016-07-14       Impact factor: 8.140

  2 in total

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