Literature DB >> 23131467

'Leveling' the playing field for analyses of single-base resolution DNA methylomes.

Matthew D Schultz, Robert J Schmitz, Joseph R Ecker.   

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Year:  2012        PMID： 23131467      PMCID： PMC3523709          DOI： 10.1016/j.tig.2012.10.012

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


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  5 in total

1.  Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

Authors:  Ryan Lister; Ronan C O'Malley; Julian Tonti-Filippini; Brian D Gregory; Charles C Berry; A Harvey Millar; Joseph R Ecker
Journal:  Cell       Date:  2008-05-02       Impact factor: 41.582

2.  High sensitivity mapping of methylated cytosines.

Authors:  S J Clark; J Harrison; C L Paul; M Frommer
Journal:  Nucleic Acids Res       Date:  1994-08-11       Impact factor: 16.971

3.  Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.

Authors:  Ryan Lister; Mattia Pelizzola; Yasuyuki S Kida; R David Hawkins; Joseph R Nery; Gary Hon; Jessica Antosiewicz-Bourget; Ronan O'Malley; Rosa Castanon; Sarit Klugman; Michael Downes; Ruth Yu; Ron Stewart; Bing Ren; James A Thomson; Ronald M Evans; Joseph R Ecker
Journal:  Nature       Date:  2011-02-02       Impact factor: 49.962

4.  Increased methylation variation in epigenetic domains across cancer types.

Authors:  Kasper Daniel Hansen; Winston Timp; Héctor Corrada Bravo; Sarven Sabunciyan; Benjamin Langmead; Oliver G McDonald; Bo Wen; Hao Wu; Yun Liu; Dinh Diep; Eirikur Briem; Kun Zhang; Rafael A Irizarry; Andrew P Feinberg
Journal:  Nat Genet       Date:  2011-06-26       Impact factor: 38.330

5.  Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Authors:  Shawn J Cokus; Suhua Feng; Xiaoyu Zhang; Zugen Chen; Barry Merriman; Christian D Haudenschild; Sriharsa Pradhan; Stanley F Nelson; Matteo Pellegrini; Steven E Jacobsen
Journal:  Nature       Date:  2008-02-17       Impact factor: 49.962
  5 in total
  127 in total

1.  RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome.

Authors:  Qing Li; Jonathan I Gent; Greg Zynda; Jawon Song; Irina Makarevitch; Cory D Hirsch; Candice N Hirsch; R Kelly Dawe; Thelma F Madzima; Karen M McGinnis; Damon Lisch; Robert J Schmitz; Matthew W Vaughn; Nathan M Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

2.  Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants.

Authors:  Meixia Zhao; Biao Zhang; Damon Lisch; Jianxin Ma
Journal:  Plant Cell       Date:  2017-11-27       Impact factor: 11.277

3.  The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.

Authors:  David John Bertioli; Steven B Cannon; Lutz Froenicke; Guodong Huang; Andrew D Farmer; Ethalinda K S Cannon; Xin Liu; Dongying Gao; Josh Clevenger; Sudhansu Dash; Longhui Ren; Márcio C Moretzsohn; Kenta Shirasawa; Wei Huang; Bruna Vidigal; Brian Abernathy; Ye Chu; Chad E Niederhuth; Pooja Umale; Ana Cláudia G Araújo; Alexander Kozik; Kyung Do Kim; Mark D Burow; Rajeev K Varshney; Xingjun Wang; Xinyou Zhang; Noelle Barkley; Patrícia M Guimarães; Sachiko Isobe; Baozhu Guo; Boshou Liao; H Thomas Stalker; Robert J Schmitz; Brian E Scheffler; Soraya C M Leal-Bertioli; Xu Xun; Scott A Jackson; Richard Michelmore; Peggy Ozias-Akins
Journal:  Nat Genet       Date:  2016-02-22       Impact factor: 38.330

4.  Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean.

Authors:  Lexiang Ji; Sandra M Mathioni; Sarah Johnson; Donna Tucker; Adam J Bewick; Kyung Do Kim; Josquin Daron; R Keith Slotkin; Scott A Jackson; Wayne A Parrott; Blake C Meyers; Robert J Schmitz
Journal:  Plant Cell       Date:  2019-08-22       Impact factor: 11.277

5.  Firefly genomes illuminate parallel origins of bioluminescence in beetles.

Authors:  Timothy R Fallon; Sarah E Lower; Ching-Ho Chang; Manabu Bessho-Uehara; Gavin J Martin; Adam J Bewick; Megan Behringer; Humberto J Debat; Isaac Wong; John C Day; Anton Suvorov; Christian J Silva; Kathrin F Stanger-Hall; David W Hall; Robert J Schmitz; David R Nelson; Sara M Lewis; Shuji Shigenobu; Seth M Bybee; Amanda M Larracuente; Yuichi Oba; Jing-Ke Weng
Journal:  Elife       Date:  2018-10-16       Impact factor: 8.140

Review 6.  pENCODE: a plant encyclopedia of DNA elements.

Authors:  Amanda K Lane; Chad E Niederhuth; Lexiang Ji; Robert J Schmitz
Journal:  Annu Rev Genet       Date:  2014-08-15       Impact factor: 16.830

7.  Methylation interactions in Arabidopsis hybrids require RNA-directed DNA methylation and are influenced by genetic variation.

Authors:  Qingzhu Zhang; Dong Wang; Zhaobo Lang; Li He; Lan Yang; Liang Zeng; Yanqiang Li; Cheng Zhao; Huan Huang; Heng Zhang; Huiming Zhang; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-05       Impact factor: 11.205

8.  Historical Meiotic Crossover Hotspots Fueled Patterns of Evolutionary Divergence in Rice.

Authors:  Alexandre P Marand; Hainan Zhao; Wenli Zhang; Zixian Zeng; Chao Fang; Jiming Jiang
Journal:  Plant Cell       Date:  2019-01-31       Impact factor: 11.277

9.  Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting.

Authors:  Daniela Pignatta; Robert M Erdmann; Elias Scheer; Colette L Picard; George W Bell; Mary Gehring
Journal:  Elife       Date:  2014-07-03       Impact factor: 8.140

10.  On the origin and evolutionary consequences of gene body DNA methylation.

Authors:  Adam J Bewick; Lexiang Ji; Chad E Niederhuth; Eva-Maria Willing; Brigitte T Hofmeister; Xiuling Shi; Li Wang; Zefu Lu; Nicholas A Rohr; Benjamin Hartwig; Christiane Kiefer; Roger B Deal; Jeremy Schmutz; Jane Grimwood; Hume Stroud; Steven E Jacobsen; Korbinian Schneeberger; Xiaoyu Zhang; Robert J Schmitz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-25       Impact factor: 11.205
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