Literature DB >> 23125806

(2S,7S)-10-Ethyl-1,8,10,12-tetra-aza-tetra-cyclo-[8.3.1.1(8,12).0(2,7)]penta-decan-10-ium iodide.

Augusto Rivera1, Héctor Jairo Osorio, John Sadat-Bernal, Václav Eigner, Michal Dušek.   

Abstract

The title chiral quaternary ammonium salt, C(13)H(25)N(4) (+)·I(-), was synthesized through the Menschutkin reaction between the cage aminal (2S,7S)-1,8,10,12-tetra-aza-tetra-cyclo-[8.3.1.1(8,12).0(2,7)]penta-decane and ethyl iodide. The quaternization occurred regioselectively on the nitrogen with major sp3 character. The crystal structure consists of anions and cations separated by normal distances. Ions are not linked through C-H⋯I hydrogen bonds.

Entities:  

Year:  2012        PMID: 23125806      PMCID: PMC3470393          DOI: 10.1107/S1600536812040159

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Becka et al. (1963 ▶); Rivera et al. (2011b ▶,c ▶); Rivera, Sadat-Bernal et al. (2012 ▶). For the synthesis of the precursor (2S,7S)-1,8,10,12-tetra­aza­tetra­cyclo [8.3.1.18,12.02,7]penta­decane, see: Rivera, Quiroga et al. (2012 ▶). For the preparation of the title salt, see: Rivera et al. (2011a ▶). For bond-length data, see: Allen et al. (1987 ▶). For the structural consequences of the anomeric effect, see: Kakanejadifard & Farnia (1997 ▶); Rivera et al. (2011b ▶). For synthetic applications of chiral quaternary ammonium salts, see: Lygo Andrews (2004 ▶); Park et al. (2004 ▶); Kim & Huh (2001 ▶).

Experimental

Crystal data

C13H25N4 +·I− M = 364.3 Orthorhombic, a = 10.2227 (5) Å b = 12.0375 (6) Å c = 12.0941 (6) Å V = 1488.25 (13) Å3 Z = 4 Mo Kα radiation μ = 2.14 mm−1 T = 120 K 0.24 × 0.06 × 0.04 mm

Data collection

Agilent Xcalibur (Atlas, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.746, T max = 1 5935 measured reflections 3223 independent reflections 3093 reflections with I > 3σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.017 wR(F 2) = 0.041 S = 1.19 3223 reflections 164 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.47 e Å−3 Absolute structure: Flack (1983 ▶), 1353 Friedel pairs Flack parameter: 0.026 (15) Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: Superflip (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812040159/bh2451sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040159/bh2451Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812040159/bh2451Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H25N4+·IDx = 1.625 Mg m3
Mr = 364.3Melting point: 450 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.7107 Å
Hall symbol: P 2ac 2abCell parameters from 3457 reflections
a = 10.2227 (5) Åθ = 3.1–27.0°
b = 12.0375 (6) ŵ = 2.14 mm1
c = 12.0941 (6) ÅT = 120 K
V = 1488.25 (13) Å3Prism, colourless
Z = 40.24 × 0.06 × 0.04 mm
F(000) = 736
Agilent Xcalibur (Atlas, Gemini ultra) diffractometer3223 independent reflections
Radiation source: Enhance (Mo) X-ray Source3093 reflections with I > 3σ(I)
Graphite monochromatorRint = 0.016
Detector resolution: 10.3784 pixels mm-1θmax = 27.1°, θmin = 3.1°
ω scansh = −13→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −14→15
Tmin = 0.746, Tmax = 1l = −10→15
5935 measured reflections
Refinement on F2H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.017Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0004I2)
wR(F2) = 0.041(Δ/σ)max = 0.018
S = 1.19Δρmax = 0.23 e Å3
3223 reflectionsΔρmin = −0.47 e Å3
164 parametersAbsolute structure: Flack (1983), 1353 Friedel pairs
0 restraintsFlack parameter: 0.026 (15)
0 constraints
xyzUiso*/Ueq
I10.995575 (12)0.462386 (9)0.966324 (9)0.01806 (4)
C10.4852 (2)0.29285 (13)0.73421 (15)0.0153 (5)
N20.36266 (17)0.33495 (15)0.78149 (16)0.0157 (5)
C30.2959 (2)0.26756 (17)0.86111 (18)0.0170 (6)
N40.20151 (16)0.17701 (14)0.81134 (14)0.0141 (5)
C50.2742 (2)0.08504 (16)0.74916 (17)0.0146 (6)
N60.35735 (17)0.12860 (15)0.66504 (15)0.0148 (5)
C70.4840 (2)0.16841 (14)0.70831 (15)0.0142 (5)
C80.6008 (2)0.13825 (18)0.63737 (19)0.0198 (7)
C90.7262 (2)0.16905 (18)0.6984 (2)0.0213 (7)
C100.7278 (2)0.28974 (16)0.73715 (19)0.0212 (7)
C110.6056 (2)0.31806 (19)0.8036 (2)0.0180 (6)
C120.2718 (2)0.37477 (18)0.69715 (19)0.0211 (6)
N130.19918 (17)0.28513 (15)0.64344 (16)0.0194 (5)
C140.2834 (2)0.20109 (17)0.58957 (18)0.0191 (6)
C150.1162 (2)0.23336 (18)0.72399 (18)0.0186 (6)
C160.1232 (2)0.13179 (17)0.90618 (18)0.0203 (6)
C170.0267 (2)0.04169 (19)0.87726 (19)0.0289 (7)
H1c10.4909120.3332280.665930.0183*
H1c30.2478720.3143690.910960.0204*
H2c30.3586540.2324040.9086410.0204*
H1c50.3253560.0424130.800470.0175*
H2c50.2120230.0350030.7166460.0175*
H1c70.4931270.1286630.7766870.017*
H1c80.6000740.0598420.622890.0237*
H2c80.5965570.1783450.5688410.0237*
H1c90.8001260.1557180.6512760.0256*
H2c90.7373330.1207810.7609160.0256*
H1c100.8040040.3025560.7816950.0254*
H2c100.7334830.3380240.6741580.0254*
H1c110.6066240.3955380.8224220.0216*
H2c110.6036620.2740330.8697990.0216*
H1c120.2114590.4263010.7298180.0254*
H2c120.3190.4163330.6423930.0254*
H1c140.231520.1563430.5406520.0229*
H2c140.3428430.2373560.5398220.0229*
H1c150.0622510.1787190.6884390.0224*
H2c150.0624160.2887070.75860.0224*
H1c160.0783970.1915560.94260.0243*
H2c160.1814370.1054590.9626930.0243*
H1c17−0.0197590.0194830.9425860.0346*
H2c17−0.0341680.0692350.8234150.0346*
H3c170.072673−0.0210420.8473440.0346*
U11U22U33U12U13U23
I10.01928 (7)0.01921 (7)0.01568 (7)0.00180 (7)0.00111 (8)0.00244 (4)
C10.0163 (11)0.0137 (9)0.0159 (8)−0.0011 (8)−0.0006 (11)−0.0009 (7)
N20.0173 (9)0.0108 (9)0.0188 (10)0.0020 (7)0.0016 (8)0.0008 (8)
C30.0184 (10)0.0152 (10)0.0174 (10)0.0000 (8)0.0010 (9)−0.0024 (8)
N40.0139 (9)0.0150 (9)0.0133 (8)−0.0001 (7)0.0012 (8)0.0007 (7)
C50.0180 (10)0.0118 (10)0.0140 (10)−0.0001 (8)0.0006 (9)−0.0012 (8)
N60.0158 (9)0.0147 (9)0.0138 (9)−0.0025 (7)−0.0021 (8)0.0006 (7)
C70.0168 (11)0.0124 (8)0.0132 (8)−0.0004 (9)−0.0006 (10)0.0005 (7)
C80.0216 (11)0.0155 (11)0.0222 (12)−0.0011 (9)0.0048 (10)−0.0031 (9)
C90.0167 (11)0.0211 (12)0.0260 (12)0.0019 (9)0.0039 (10)−0.0022 (10)
C100.0165 (11)0.0212 (12)0.0257 (12)−0.0032 (8)−0.0022 (10)−0.0010 (10)
C110.0203 (11)0.0150 (11)0.0187 (11)−0.0033 (9)0.0002 (10)−0.0007 (9)
C120.0218 (11)0.0143 (11)0.0274 (11)0.0025 (9)0.0003 (10)0.0061 (9)
N130.0180 (9)0.0201 (9)0.0200 (9)0.0011 (7)−0.0001 (8)0.0059 (7)
C140.0218 (11)0.0234 (11)0.0121 (10)−0.0023 (9)−0.0013 (9)0.0027 (9)
C150.0147 (11)0.0216 (11)0.0196 (11)0.0034 (8)−0.0044 (9)0.0028 (9)
C160.0206 (11)0.0254 (12)0.0148 (10)−0.0005 (9)0.0045 (9)0.0005 (9)
C170.0255 (12)0.0346 (12)0.0265 (11)−0.0074 (11)0.0048 (10)0.0037 (9)
C1—C71.530 (2)C9—H2c90.96
C1—C111.521 (3)C10—C91.527 (3)
C1—H1c10.96C10—C111.524 (3)
N2—C11.467 (3)C10—H1c100.96
N2—C31.432 (3)C10—H2c100.96
N2—C121.460 (3)C11—H1c110.96
C3—H1c30.96C11—H2c110.96
C3—H2c30.96C12—H1c120.96
N4—C31.575 (3)C12—H2c120.96
N4—C51.531 (3)N13—C121.462 (3)
N4—C151.529 (3)N13—C141.480 (3)
N4—C161.501 (3)N13—C151.434 (3)
C5—H1c50.96C14—H1c140.96
C5—H2c50.96C14—H2c140.96
N6—C51.426 (3)C15—H1c150.96
N6—C71.476 (3)C15—H2c150.96
N6—C141.472 (3)C16—H1c160.96
C7—H1c70.96C16—H2c160.96
C8—C71.514 (3)C17—C161.507 (3)
C8—C91.526 (3)C17—H1c170.96
C8—H1c80.96C17—H2c170.96
C8—H2c80.96C17—H3c170.96
C9—H1c90.96
N2—C1—C7114.27 (17)H1c9—C9—H2c9105.87
N2—C1—C11114.02 (16)C9—C10—H1c10109.47
N2—C1—H1c1102.26C9—C10—H2c10109.47
C7—C1—C11108.35 (17)C11—C10—C9111.49 (18)
C7—C1—H1c1108.66C11—C10—H1c10109.47
C11—C1—H1c1108.95C11—C10—H2c10109.47
C1—N2—C3118.26 (16)H1c10—C10—H2c10107.37
C1—N2—C12112.59 (17)C1—C11—C10109.11 (18)
C12—N2—C3110.62 (17)C1—C11—H1c11109.47
N2—C3—N4115.28 (17)C1—C11—H2c11109.47
N2—C3—H1c3109.47C10—C11—H1c11109.47
N2—C3—H2c3109.47C10—C11—H2c11109.47
N4—C3—H1c3109.47H1c11—C11—H2c11109.83
N4—C3—H2c3109.47N2—C12—N13113.02 (17)
H1c3—C3—H2c3102.97N2—C12—H1c12109.47
C3—N4—C5113.01 (15)N2—C12—H2c12109.47
C3—N4—C15107.85 (15)N13—C12—H1c12109.47
C3—N4—C16106.58 (15)N13—C12—H2c12109.47
C5—N4—C15104.97 (15)H1c12—C12—H2c12105.67
C16—N4—C5111.84 (15)C12—N13—C14113.87 (17)
C16—N4—C15112.64 (15)C12—N13—C15108.62 (17)
N4—C5—H1c5109.47C14—N13—C15110.25 (17)
N4—C5—H2c5109.47N6—C14—N13115.54 (18)
N6—C5—N4111.96 (16)N6—C14—H1c14109.47
N6—C5—H1c5109.47N6—C14—H2c14109.47
N6—C5—H2c5109.47N13—C14—H1c14109.47
H1c5—C5—H2c5106.87N13—C14—H2c14109.47
C7—N6—C5112.91 (16)H1c14—C14—H2c14102.63
C7—N6—C14118.54 (16)N4—C15—H1c15109.47
C14—N6—C5110.77 (16)N4—C15—H2c15109.47
C1—C7—H1c7108.1N13—C15—N4108.96 (17)
N6—C7—C1113.40 (17)N13—C15—H1c15109.47
N6—C7—C8114.37 (16)N13—C15—H2c15109.47
N6—C7—H1c7103.22H1c15—C15—H2c15109.98
C8—C7—C1110.15 (17)N4—C16—C17115.63 (18)
C8—C7—H1c7106.98N4—C16—H1c16109.47
C7—C8—C9109.28 (18)N4—C16—H2c16109.47
C7—C8—H1c8109.47C17—C16—H1c16109.47
C7—C8—H2c8109.47C17—C16—H2c16109.47
C9—C8—H1c8109.47H1c16—C16—H2c16102.52
C9—C8—H2c8109.47C16—C17—H1c17109.47
H1c8—C8—H2c8109.66C16—C17—H2c17109.47
C8—C9—C10112.85 (18)C16—C17—H3c17109.47
C8—C9—H1c9109.47H1c17—C17—H2c17109.47
C8—C9—H2c9109.47H1c17—C17—H3c17109.47
C10—C9—H1c9109.47H2c17—C17—H3c17109.47
C10—C9—H2c9109.47
  4 in total

1.  Enantioselective alkylation of beta-keto esters by phase-transfer catalysis using chiral quaternary ammonium salts.

Authors:  Eun Joo Park; Mi Hee Kim; Dae Young Kim
Journal:  J Org Chem       Date:  2004-10-01       Impact factor: 4.354

2.  Asymmetric phase-transfer catalysis utilizing chiral quaternary ammonium salts: asymmetric alkylation of glycine imines.

Authors:  Barry Lygo; Benjamin I Andrews
Journal:  Acc Chem Res       Date:  2004-08       Impact factor: 22.384

3.  1-Heptyl-1,3,6,8-tetraaza-tricyclo-[4.3.1.1]undecan-1-ium iodide.

Authors:  Augusto Rivera; John Sadat-Bernal; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

4.  1-Hexyl-1,3,6,8-tetra-aza-tricyclo-[4.3.1.1]undecan-1-ium iodide.

Authors:  Augusto Rivera; John Sadat-Bernal; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-03
  4 in total

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