Literature DB >> 22064969

1-Heptyl-1,3,6,8-tetraaza-tricyclo-[4.3.1.1]undecan-1-ium iodide.

Augusto Rivera, John Sadat-Bernal, Jaime Ríos-Motta, Karla Fejfarová, Michal Dušek.   

Abstract

The title compound C(14)H(29)N(4) (+)·I(-) salt, was obtained by the reaction of cage adamanzane-type aminal 1,3,6,8-tetra-aza-tricyclo-[4.3.1.1(3,8)]undecane with heptyl iodide. In the cation, the bond lengths and angles are within normal ranges, except for one N-C(ring) bond distance of 1.542 (3) Å, which is unexpectedly long compared with related compounds. In the crystal, ions are linked through C-H⋯I hydrogen bonds. The crystal studied was a non-merohedral twin with a minor twin domain of 6.56 (5)%.

Entities:  

Year:  2011        PMID: 22064969      PMCID: PMC3201392          DOI: 10.1107/S1600536811036403

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound, see: Rivera et al. (2011 ▶). For synthetic applications of quaternary ammonium salts, see: Starks (1971 ▶). For related structures, see: Betz & Klüfers (2007 ▶); Lee et al. (2011 ▶).

Experimental

Crystal data

C14H29N4 +·I− M = 380.3 Monoclinic, a = 8.8325 (2) Å b = 15.3276 (3) Å c = 12.4792 (2) Å β = 100.072 (2)° V = 1663.41 (6) Å3 Z = 4 Mo Kα radiation μ = 1.92 mm−1 T = 160 K 0.31 × 0.24 × 0.16 mm

Data collection

Agilent Xcalibur diffractometer with Atlas (Gemini ultra Cu) detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.871, T max = 1 22619 measured reflections 4183 independent reflections 3517 reflections with I > 3σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.065 S = 1.61 4183 reflections 173 parameters H-atom parameters constrained Δρmax = 0.53 e Å−3 Δρmin = −0.48 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: Diamond (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036403/bx2371sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036403/bx2371Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036403/bx2371Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H29N4+·IF(000) = 776
Mr = 380.3Dx = 1.518 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ynCell parameters from 12607 reflections
a = 8.8325 (2) Åθ = 2.9–29.2°
b = 15.3276 (3) ŵ = 1.92 mm1
c = 12.4792 (2) ÅT = 160 K
β = 100.072 (2)°Irregular shape, colourless
V = 1663.41 (6) Å30.31 × 0.24 × 0.16 mm
Z = 4
Agilent Xcalibur diffractometer with Atlas (Gemini ultra Cu) detector4183 independent reflections
Radiation source: Enhance (Mo) X-ray Source3517 reflections with I > 3σ(I)
graphiteRint = 0.031
Detector resolution: 10.3784 pixels mm-1θmax = 29.3°, θmin = 2.9°
Rotation method data acquisition using ω scansh = −11→12
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −20→19
Tmin = 0.871, Tmax = 1l = −16→16
22619 measured reflections
Refinement on F2116 constraints
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.065Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0004I2)
S = 1.61(Δ/σ)max = 0.016
4183 reflectionsΔρmax = 0.53 e Å3
173 parametersΔρmin = −0.48 e Å3
0 restraints
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The crystal studied was a non-merohedral twin with a minor twin domain of 6.56 (5)%. The overlaps of reflection between the twin domains were calculated by Jana2006 software using the twinning matrix and user- defined treshold 0.15 degs for full overlap. Due to no support for twinning in the official CIF dictionary the twinning matrix has been saved in the CIF file using special _jana_cell_twin_matrix keyword.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
I10.255234 (19)0.362795 (11)0.161798 (13)0.03611 (6)
N10.1652 (2)0.66563 (12)0.09078 (15)0.0265 (6)
N20.4475 (2)0.65925 (13)0.13273 (16)0.0299 (6)
N30.3065 (2)0.60189 (13)−0.03990 (16)0.0314 (6)
C10.1645 (3)0.75253 (15)0.0285 (2)0.0343 (8)
C20.3103 (3)0.65513 (15)0.17770 (19)0.0285 (7)
C30.1707 (3)0.59276 (16)0.00795 (18)0.0304 (7)
C40.4444 (3)0.59596 (16)0.04572 (19)0.0321 (8)
C50.5050 (4)0.74388 (18)0.1150 (3)0.0570 (12)
C60.4250 (4)0.7963 (2)0.0231 (3)0.0625 (13)
N40.2865 (3)0.76063 (14)−0.03149 (18)0.0417 (8)
C70.2995 (3)0.68432 (18)−0.0992 (2)0.0406 (9)
C80.0209 (3)0.66349 (16)0.13859 (19)0.0318 (8)
C90.0031 (3)0.58651 (17)0.2112 (2)0.0362 (8)
C10−0.1575 (3)0.58205 (17)0.2378 (2)0.0361 (8)
C11−0.1784 (3)0.50740 (18)0.3136 (2)0.0376 (8)
C12−0.3416 (3)0.4983 (2)0.3350 (2)0.0490 (10)
C13−0.3676 (3)0.4201 (2)0.4036 (2)0.0543 (11)
C14−0.2874 (4)0.4242 (2)0.5197 (3)0.0644 (13)
H1a0.0679250.759245−0.0197730.0411*
H1b0.1683630.8002940.0786230.0411*
H2a0.3123410.6997980.2318690.0343*
H2b0.306210.6004270.2145490.0343*
H3a0.1723310.5372270.0437050.0365*
H3b0.0811920.596113−0.0479990.0365*
H4a0.4521990.5381550.0758020.0385*
H4b0.5349050.6025730.0135980.0385*
H5a0.6122010.7399390.1106470.0684*
H5b0.5144520.7773250.1808560.0684*
H6a0.4066090.8538910.0480840.075*
H6b0.4928830.806321−0.027930.075*
H7a0.3890140.689961−0.1326460.0488*
H7b0.2143780.683107−0.1587380.0488*
H8a0.0119910.7167190.1775670.0381*
H8b−0.0668610.6667720.0811960.0381*
H9a0.0766570.5910930.2774140.0435*
H9b0.0248420.5335480.1756990.0435*
H10a−0.1812440.6362010.2698080.0433*
H10b−0.2309270.5766030.1716390.0433*
H11a−0.1472640.4537610.2842180.0451*
H11b−0.1092580.5147720.381460.0451*
H12a−0.4116440.4960680.2669360.0588*
H12b−0.3702870.5505790.3688460.0588*
H13a−0.4759370.4121620.401430.0651*
H13b−0.3374790.3679370.3703270.0651*
H14a−0.1782170.422720.522210.0966*
H14b−0.3177570.3751480.5588920.0966*
H14c−0.3149790.4772580.5523030.0966*
U11U22U33U12U13U23
I10.03178 (10)0.03586 (11)0.03959 (11)−0.00013 (7)0.00324 (7)0.01196 (7)
N10.0256 (10)0.0264 (10)0.0269 (10)0.0031 (8)0.0033 (8)−0.0015 (8)
N20.0258 (10)0.0313 (11)0.0314 (11)0.0012 (8)0.0019 (9)−0.0028 (9)
N30.0340 (11)0.0326 (11)0.0276 (10)0.0013 (9)0.0050 (9)−0.0032 (9)
C10.0380 (14)0.0266 (13)0.0377 (14)0.0063 (11)0.0052 (12)0.0061 (11)
C20.0283 (12)0.0314 (13)0.0245 (11)0.0047 (10)0.0006 (10)−0.0018 (9)
C30.0320 (13)0.0281 (12)0.0297 (12)−0.0004 (10)0.0013 (10)−0.0054 (10)
C40.0310 (13)0.0315 (13)0.0342 (13)0.0049 (11)0.0068 (11)−0.0007 (11)
C50.0535 (19)0.0419 (17)0.081 (2)−0.0115 (15)0.0258 (18)−0.0055 (16)
C60.056 (2)0.057 (2)0.076 (2)−0.0098 (17)0.0148 (18)−0.0051 (18)
N40.0476 (14)0.0321 (12)0.0487 (13)0.0000 (10)0.0170 (11)0.0071 (10)
C70.0456 (16)0.0481 (16)0.0287 (13)0.0058 (13)0.0076 (12)0.0075 (12)
C80.0272 (12)0.0331 (13)0.0348 (13)0.0050 (10)0.0049 (11)−0.0008 (11)
C90.0341 (13)0.0379 (14)0.0366 (13)0.0017 (12)0.0060 (11)0.0039 (11)
C100.0304 (13)0.0367 (14)0.0409 (14)0.0003 (11)0.0055 (11)0.0015 (11)
C110.0344 (14)0.0394 (15)0.0379 (14)−0.0011 (11)0.0035 (12)0.0021 (11)
C120.0326 (15)0.0578 (19)0.0547 (18)−0.0084 (13)0.0026 (13)0.0159 (15)
C130.0458 (18)0.059 (2)0.0562 (18)−0.0162 (15)0.0040 (15)0.0130 (16)
C140.058 (2)0.083 (3)0.0521 (19)−0.0093 (19)0.0083 (17)0.0134 (18)
N1—C11.542 (3)N4—C71.459 (4)
N1—C21.536 (3)C7—H7a0.96
N1—C31.528 (3)C7—H7b0.96
N1—C81.499 (3)C8—C91.512 (4)
N2—C21.424 (3)C8—H8a0.96
N2—C41.453 (3)C8—H8b0.96
N2—C51.424 (4)C9—C101.514 (4)
N3—C31.437 (3)C9—H9a0.96
N3—C41.476 (3)C9—H9b0.96
N3—C71.460 (3)C10—C111.517 (4)
C1—N41.421 (4)C10—H10a0.96
C1—H1a0.96C10—H10b0.96
C1—H1b0.96C11—C121.517 (4)
C2—H2a0.96C11—H11a0.96
C2—H2b0.96C11—H11b0.96
C3—H3a0.96C12—C131.515 (4)
C3—H3b0.96C12—H12a0.96
C4—H4a0.96C12—H12b0.96
C4—H4b0.96C13—C141.498 (4)
C5—C61.475 (4)C13—H13a0.96
C5—H5a0.96C13—H13b0.96
C5—H5b0.96C14—H14a0.96
C6—N41.402 (4)C14—H14b0.96
C6—H6a0.96C14—H14c0.96
C6—H6b0.96C14—C9i3.829 (4)
C1—N1—C2112.07 (17)C6—N4—C7116.3 (2)
C1—N1—C3106.73 (17)N3—C7—N4113.6 (2)
C1—N1—C8106.94 (18)N3—C7—H7a109.4709
C2—N1—C3106.25 (17)N3—C7—H7b109.4704
C2—N1—C8112.29 (18)N4—C7—H7a109.472
C3—N1—C8112.51 (18)N4—C7—H7b109.4716
C2—N2—C4111.04 (18)H7a—C7—H7b105.0122
C2—N2—C5116.9 (2)N1—C8—C9116.1 (2)
C4—N2—C5116.9 (2)N1—C8—H8a109.4708
C3—N3—C4109.67 (18)N1—C8—H8b109.4713
C3—N3—C7109.3 (2)C9—C8—H8a109.4716
C4—N3—C7112.12 (19)C9—C8—H8b109.471
N1—C1—N4113.9 (2)H8a—C8—H8b101.9387
N1—C1—H1a109.4716C8—C9—C10111.4 (2)
N1—C1—H1b109.4717C8—C9—H9a109.4711
N4—C1—H1a109.4708C8—C9—H9b109.4714
N4—C1—H1b109.4711C10—C9—H9a109.4709
H1a—C1—H1b104.657C10—C9—H9b109.4708
N1—C2—N2112.32 (19)H9a—C9—H9b107.4338
N1—C2—H2a109.4714C9—C10—C11113.1 (2)
N1—C2—H2b109.4711C9—C10—H10a109.4709
N2—C2—H2a109.4715C9—C10—H10b109.4711
N2—C2—H2b109.4706C11—C10—H10a109.4712
H2a—C2—H2b106.4595C11—C10—H10b109.4712
N1—C3—N3109.72 (19)H10a—C10—H10b105.6299
N1—C3—H3a109.4716C10—C11—C12113.7 (2)
N1—C3—H3b109.4707C10—C11—H11a109.4711
N3—C3—H3a109.471C10—C11—H11b109.4709
N3—C3—H3b109.4713C12—C11—H11a109.4715
H3a—C3—H3b109.223C12—C11—H11b109.4715
N2—C4—N3113.9 (2)H11a—C11—H11b104.9043
N2—C4—H4a109.4712C11—C12—C13114.5 (2)
N2—C4—H4b109.4712C11—C12—H12a109.471
N3—C4—H4a109.4716C11—C12—H12b109.4716
N3—C4—H4b109.471C13—C12—H12a109.4711
H4a—C4—H4b104.6525C13—C12—H12b109.4712
N2—C5—C6118.8 (3)H12a—C12—H12b103.914
N2—C5—H5a109.4717C12—C13—C14114.9 (3)
N2—C5—H5b109.4715C12—C13—H13a109.4717
C6—C5—H5a109.4709C12—C13—H13b109.4715
C6—C5—H5b109.4709C14—C13—H13a109.4714
H5a—C5—H5b98.1968C14—C13—H13b109.4712
C5—C6—N4115.1 (3)H13a—C13—H13b103.4432
C5—C6—H6a109.4709C13—C14—H14a109.4716
C5—C6—H6b109.4718C13—C14—H14b109.4709
N4—C6—H6a109.4712C13—C14—H14c109.4713
N4—C6—H6b109.4714H14a—C14—H14b109.4705
H6a—C6—H6b103.2278H14a—C14—H14c109.4719
C1—N4—C6117.1 (2)H14b—C14—H14c109.4712
C1—N4—C7112.3 (2)
C11—C12—C13—C1467.8 (4)N2—C5—C6—N47.2 (4)
D—H···AD—HH···AD···AD—H···A
C2—H2a···I1ii0.962.943.858 (2)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2a⋯I1i0.962.943.858 (2)161

Symmetry code: (i) .

  1 in total

1.  (1,2-Dicarba-closo-dodeca-boran-yl)trimethyl-methanaminium iodide.

Authors:  Jong-Dae Lee; Won-Sik Han; Il-Hwan Suh; Sang Ook Kang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30
  1 in total
  2 in total

1.  1-Hexyl-1,3,6,8-tetra-aza-tricyclo-[4.3.1.1]undecan-1-ium iodide.

Authors:  Augusto Rivera; John Sadat-Bernal; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-03

2.  (2S,7S)-10-Ethyl-1,8,10,12-tetra-aza-tetra-cyclo-[8.3.1.1(8,12).0(2,7)]penta-decan-10-ium iodide.

Authors:  Augusto Rivera; Héctor Jairo Osorio; John Sadat-Bernal; Václav Eigner; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-29
  2 in total

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