Literature DB >> 23125800

Redetermination of 2,2'-bipyridine-1,1'-diium dibromide.

Basem F Ali1, Rawhi Al-Far, Salim F Haddad.   

Abstract

In the title mol-ecular n class="Chemical">salt, C(10)H(10)N(2) (2+)·2Br(-), the dihedral angle between the aromatic rings is 20.83 (14)° and the N-H groups have a transoid conformaton [N-C-C-N = 158.5 (3)°]. In the crystal, the cations are linked to the anions by two N-H⋯Br and five C-H⋯Br hydrogen bonds, generating corrugated sheets incorporating R(2) (1)(7), R(4) (2)(10), R(4) (2)(11) and two different R(4) (2)(12) loops. This structure was originally reported by Nakatsu et al. [Acta Cryst (1972), A28, S24], but no atomic coordinates are available.

Entities:  

Year:  2012        PMID: 23125800      PMCID: PMC3470387          DOI: 10.1107/S1600536812040214

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the previous report of this structure as a conference abstract, see: Nakatsu et al. (1972 ▶). For related structures of 2,2′-bipyridium dication salts, see: Ma et al. (2000 ▶). For structures containing dicationic 2,2′-bipyridyl derivative n class="Chemical">salts, see: Amarante et al. (2011 ▶); Eckensberger et al. (2008 ▶). For structures of monocationic 2,2′-bipyridinium salts, see: Kavitha et al. (2006 ▶). For ring motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C10H10N2 2+·2Br− M = 318.00 Monoclinic, a = 7.5568 (6) Å b = 9.7747 (7) Å c = 15.3533 (12) Å β = 95.830 (7)° V = 1128.21 (15) Å3 Z = 4 Mo Kα radiation μ = 7.15 mm−1 T = 293 K 0.20 × 0.15 × 0.10 mm

Data collection

Agilent Xcalibur EOS diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.287, T max = 0.489 5425 measured reflections 3054 independent reflections 1884 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.073 S = 1.03 3054 reflections 127 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.57 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812040214/hb6957sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040214/hb6957Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812040214/hb6957Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10N22+·2BrF(000) = 616
Mr = 318.00Dx = 1.872 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1832 reflections
a = 7.5568 (6) Åθ = 2.9–29.1°
b = 9.7747 (7) ŵ = 7.15 mm1
c = 15.3533 (12) ÅT = 293 K
β = 95.830 (7)°Chunk, colourless
V = 1128.21 (15) Å30.20 × 0.15 × 0.10 mm
Z = 4
Agilent Xcalibur EOS diffractometer3054 independent reflections
Radiation source: Enhance (Mo) x-ray source1884 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Detector resolution: 16.0534 pixels mm-1θmax = 29.2°, θmin = 3.4°
ω scansh = −7→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −13→10
Tmin = 0.287, Tmax = 0.489l = −21→16
5425 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.025P)2] where P = (Fo2 + 2Fc2)/3
3054 reflections(Δ/σ)max = 0.001
127 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.57 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.23397 (5)0.03486 (4)0.67326 (2)0.04534 (13)
N10.4480 (4)0.4858 (3)0.63133 (16)0.0384 (7)
H1A0.53660.45800.60510.046*
C10.3257 (6)0.3947 (4)0.6491 (2)0.0507 (10)
H1B0.33690.30360.63300.061*
N20.5392 (4)0.8449 (3)0.61771 (15)0.0369 (7)
H2A0.43780.87140.63230.044*
C20.1841 (6)0.4356 (4)0.6909 (2)0.0554 (11)
H2B0.09500.37390.70130.066*
Br20.74405 (5)0.29766 (4)0.55966 (2)0.04749 (13)
C30.1749 (5)0.5695 (4)0.7175 (2)0.0532 (11)
H3A0.08220.59790.74880.064*
C40.3033 (5)0.6619 (4)0.6978 (2)0.0429 (9)
H4A0.29680.75260.71540.051*
C50.4402 (4)0.6197 (3)0.65239 (19)0.0314 (7)
C60.6477 (5)0.9395 (4)0.5912 (2)0.0446 (9)
H6A0.61411.03110.58980.054*
C70.8083 (6)0.9019 (4)0.5662 (2)0.0505 (10)
H7A0.88510.96710.54700.061*
C80.8553 (5)0.7657 (4)0.5698 (2)0.0509 (10)
H8A0.96410.73830.55240.061*
C90.7398 (5)0.6683 (4)0.5997 (2)0.0449 (9)
H9A0.77230.57650.60350.054*
C100.5767 (4)0.7105 (3)0.62330 (19)0.0324 (8)
U11U22U33U12U13U23
Br10.0395 (2)0.0378 (2)0.0598 (2)0.00431 (18)0.01032 (17)−0.00318 (18)
N10.0397 (19)0.0320 (17)0.0441 (16)−0.0004 (14)0.0068 (13)0.0021 (13)
C10.058 (3)0.035 (2)0.058 (2)−0.013 (2)0.001 (2)0.0056 (18)
N20.0309 (17)0.0316 (17)0.0483 (17)−0.0033 (14)0.0055 (13)0.0014 (13)
C20.043 (3)0.056 (3)0.067 (3)−0.019 (2)0.008 (2)0.016 (2)
Br20.0500 (3)0.0356 (2)0.0580 (2)0.00351 (19)0.01070 (18)−0.00453 (16)
C30.036 (2)0.060 (3)0.067 (2)0.004 (2)0.0223 (19)0.018 (2)
C40.037 (2)0.036 (2)0.057 (2)0.0052 (17)0.0111 (18)0.0031 (17)
C50.0301 (19)0.0260 (18)0.0379 (17)−0.0007 (16)0.0022 (14)0.0036 (14)
C60.045 (3)0.037 (2)0.052 (2)−0.0067 (19)0.0020 (18)0.0054 (17)
C70.048 (3)0.052 (3)0.053 (2)−0.015 (2)0.0113 (19)0.0052 (19)
C80.034 (2)0.065 (3)0.056 (2)−0.005 (2)0.0157 (17)−0.002 (2)
C90.038 (2)0.038 (2)0.060 (2)0.0053 (18)0.0112 (18)0.0026 (17)
C100.0304 (19)0.0319 (19)0.0349 (17)0.0001 (16)0.0033 (14)0.0023 (14)
N1—C11.331 (4)C4—C51.369 (4)
N1—C51.351 (4)C4—H4A0.9300
N1—H1A0.8600C5—C101.464 (4)
C1—C21.363 (6)C6—C71.360 (5)
C1—H1B0.9300C6—H6A0.9300
N2—C61.326 (4)C7—C81.378 (5)
N2—C101.345 (4)C7—H7A0.9300
N2—H2A0.8600C8—C91.399 (5)
C2—C31.375 (5)C8—H8A0.9300
C2—H2B0.9300C9—C101.383 (5)
C3—C41.382 (5)C9—H9A0.9300
C3—H3A0.9300
C1—N1—C5123.5 (3)N1—C5—C4117.8 (3)
C1—N1—H1A118.3N1—C5—C10117.7 (3)
C5—N1—H1A118.3C4—C5—C10124.4 (3)
N1—C1—C2119.6 (4)N2—C6—C7119.7 (4)
N1—C1—H1B120.2N2—C6—H6A120.1
C2—C1—H1B120.2C7—C6—H6A120.1
C6—N2—C10124.6 (3)C6—C7—C8118.9 (4)
C6—N2—H2A117.7C6—C7—H7A120.6
C10—N2—H2A117.7C8—C7—H7A120.6
C1—C2—C3119.0 (4)C7—C8—C9120.3 (4)
C1—C2—H2B120.5C7—C8—H8A119.9
C3—C2—H2B120.5C9—C8—H8A119.9
C2—C3—C4119.9 (4)C10—C9—C8119.0 (3)
C2—C3—H3A120.0C10—C9—H9A120.5
C4—C3—H3A120.0C8—C9—H9A120.5
C5—C4—C3120.0 (3)N2—C10—C9117.6 (3)
C5—C4—H4A120.0N2—C10—C5117.5 (3)
C3—C4—H4A120.0C9—C10—C5125.0 (3)
C5—N1—C1—C2−0.2 (5)C6—C7—C8—C9−0.7 (5)
N1—C1—C2—C3−2.9 (6)C7—C8—C9—C101.6 (5)
C1—C2—C3—C43.3 (6)C6—N2—C10—C9−0.1 (5)
C2—C3—C4—C5−0.5 (5)C6—N2—C10—C5−178.9 (3)
C1—N1—C5—C43.0 (5)C8—C9—C10—N2−1.2 (5)
C1—N1—C5—C10−175.6 (3)C8—C9—C10—C5177.6 (3)
C3—C4—C5—N1−2.6 (5)N1—C5—C10—N2158.5 (3)
C3—C4—C5—C10175.9 (3)C4—C5—C10—N2−20.1 (5)
C10—N2—C6—C71.0 (5)N1—C5—C10—C9−20.3 (5)
N2—C6—C7—C8−0.6 (5)C4—C5—C10—C9161.1 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Br20.862.373.178 (3)156
N2—H2A···Br1i0.862.353.145 (3)154
C1—H1B···Br10.932.833.611 (4)143
C9—H9A···Br20.932.813.675 (4)155
C6—H6A···Br2i0.932.843.619 (4)142
C4—H4A···Br1i0.932.863.697 (4)150
C3—H3A···Br1ii0.932.853.677 (4)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯Br20.862.373.178 (3)156
N2—H2A⋯Br1i 0.862.353.145 (3)154
C1—H1B⋯Br10.932.833.611 (4)143
C9—H9A⋯Br20.932.813.675 (4)155
C6—H6A⋯Br2i 0.932.843.619 (4)142
C4—H4A⋯Br1i 0.932.863.697 (4)150
C3—H3A⋯Br1ii 0.932.853.677 (4)149

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,2'-Bipyridinium bis(perchlorate)

Authors: 
Journal:  Acta Crystallogr C       Date:  2000-12       Impact factor: 1.172

3.  Simple hydrogen-bonded chains in 2,2'-bipyridinium thiocyanate, hydrogen-bonded chains of rings in 2,2'-bipyridinium picrate and hydrogen-bonded sheets in 2,2'-bipyridinium hydrogensulfate.

Authors:  Savaridasson Jose Kavitha; Krishnaswamy Panchanatheswaran; John N Low; George Ferguson; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2006-03-11       Impact factor: 1.172

4.  4,4'-Dimethyl-2,2'-bipyridinium dichloride.

Authors:  Urs David Eckensberger; Hans-Wolfram Lerner; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23

5.  4,4'-Di-tert-butyl-2,2'-dipyridinium dichloride.

Authors:  Tatiana R Amarante; Isabel S Gonçalves; Filipe A Almeida Paz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-06
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.