Literature DB >> 23125794

(E)-1-[(3-Iodo-phen-yl)imino-meth-yl]naphthalen-2-ol.

Tufan Akbal1, Ayşen Ağar Alaman, Sümeyye Gümüş, Ahmet Erdönmez.   

Abstract

In the title mol-ecule, C(17)H(12)INO, the dihedral angle between the naphthaldeyde plane and the 3-iodo-aniline plane is20.07 (13)°. It exists in the solid state as an enol-imine tautomer with a strong intra-molecular O-H⋯N hydrogen bond.

Entities:  

Year:  2012        PMID: 23125794      PMCID: PMC3470381          DOI: 10.1107/S1600536812036793

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of iodoaromatic compounds in synthetic organic chemistry, medicine and biochemistry, see; Merkushev (1988 ▶); Olah et al. (1993 ▶). Schiff base complexes have been used in catalytic reactions and are used as models for biological systems, see: Hamilton et al. (1987 ▶); Pyrz et al. (1985 ▶); Costamagna et al. (1992 ▶). For related structures, see: Ünver et al. (2000 ▶); Manvizhi et al. (2011 ▶).

Experimental

Crystal data

C17H12INO M = 373.18 Monoclinic, a = 32.059 (3) Å b = 4.8392 (3) Å c = 19.2682 (16) Å β = 107.269 (6)° V = 2854.5 (4) Å3 Z = 8 Mo Kα radiation μ = 2.24 mm−1 T = 296 K 0.80 × 0.30 × 0.03 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.793, T max = 0.925 9569 measured reflections 2781 independent reflections 1607 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.094 S = 0.93 2781 reflections 181 parameters H-atom parameters constrained Δρmax = 0.87 e Å−3 Δρmin = −0.57 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: WinGX (Farrugia, 1997 ▶) and SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036793/zj2093sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036793/zj2093Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812036793/zj2093Isup3.mol Supplementary material file. DOI: 10.1107/S1600536812036793/zj2093Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H12INOF(000) = 1456
Mr = 373.18Dx = 1.737 Mg m3
Monoclinic, C2/cMelting point = 410–412 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 32.059 (3) ÅCell parameters from 9569 reflections
b = 4.8392 (3) Åθ = 1.3–26.0°
c = 19.2682 (16) ŵ = 2.24 mm1
β = 107.269 (6)°T = 296 K
V = 2854.5 (4) Å3Needle, yellow
Z = 80.80 × 0.30 × 0.03 mm
Stoe IPDS 2 diffractometer2781 independent reflections
Radiation source: fine-focus sealed tube1607 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.056
w–scan rotationθmax = 26.0°, θmin = 1.3°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)h = −38→38
Tmin = 0.793, Tmax = 0.925k = −5→5
9569 measured reflectionsl = −23→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.0405P)2] where P = (Fo2 + 2Fc2)/3
S = 0.93(Δ/σ)max = 0.001
2781 reflectionsΔρmax = 0.87 e Å3
181 parametersΔρmin = −0.57 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.052729 (12)0.52255 (9)0.33319 (2)0.08465 (19)
C50.16216 (15)0.0503 (9)0.4653 (2)0.0490 (11)
C80.15014 (14)−0.4836 (10)0.5955 (2)0.0498 (11)
O10.22667 (12)−0.3804 (8)0.6294 (2)0.0784 (11)
H10.2177−0.27660.59460.118*
C90.19336 (16)−0.5200 (11)0.6398 (3)0.0593 (13)
C110.1710 (2)−0.8587 (12)0.7108 (3)0.0712 (16)
H110.1781−0.98380.74910.085*
N10.17155 (13)−0.1458 (9)0.5220 (2)0.0546 (10)
C40.19651 (17)0.1402 (12)0.4410 (3)0.0620 (13)
H40.22430.06720.46160.074*
C60.12123 (16)0.1594 (10)0.4331 (2)0.0514 (12)
H60.09760.10100.44810.062*
C70.14134 (16)−0.2876 (10)0.5375 (2)0.0508 (12)
H70.1125−0.26070.50960.061*
C30.19005 (19)0.3351 (13)0.3873 (3)0.0721 (16)
H30.21350.39350.37200.087*
C20.14946 (18)0.4450 (11)0.3557 (3)0.0655 (14)
H20.14510.57790.31940.079*
C10.11518 (16)0.3532 (11)0.3793 (2)0.0544 (12)
C130.11570 (16)−0.6479 (10)0.6093 (2)0.0510 (12)
C170.0936 (2)−0.9958 (12)0.6815 (3)0.0797 (16)
H170.1007−1.11920.72030.096*
C140.07180 (17)−0.6311 (12)0.5668 (3)0.0651 (14)
H140.0638−0.50920.52770.078*
C160.0511 (2)−0.9750 (14)0.6391 (4)0.0868 (18)
H160.0296−1.08360.64880.104*
C100.20262 (19)−0.7080 (12)0.6980 (3)0.0693 (15)
H100.2312−0.72730.72790.083*
C120.1268 (2)−0.8351 (11)0.6679 (3)0.0613 (14)
C150.0407 (2)−0.7938 (14)0.5825 (4)0.0810 (17)
H150.0118−0.77990.55380.097*
U11U22U33U12U13U23
I10.0709 (2)0.0937 (3)0.0771 (3)0.0026 (2)0.00310 (19)0.0215 (2)
C50.053 (3)0.047 (3)0.047 (3)−0.006 (2)0.014 (2)−0.009 (2)
C80.058 (3)0.048 (3)0.045 (2)0.007 (2)0.017 (2)−0.005 (2)
O10.054 (2)0.094 (3)0.079 (3)0.005 (2)0.007 (2)0.005 (2)
C90.058 (3)0.060 (3)0.058 (3)0.010 (3)0.015 (2)−0.010 (3)
C110.104 (5)0.060 (4)0.045 (3)0.021 (3)0.014 (3)0.006 (3)
N10.053 (2)0.055 (3)0.056 (2)0.001 (2)0.016 (2)−0.005 (2)
C40.053 (3)0.067 (4)0.067 (3)−0.011 (3)0.019 (3)−0.009 (3)
C60.054 (3)0.056 (3)0.045 (3)−0.010 (2)0.015 (2)−0.005 (2)
C70.050 (3)0.053 (3)0.046 (3)0.004 (2)0.010 (2)−0.007 (2)
C30.069 (4)0.085 (4)0.070 (4)−0.027 (3)0.032 (3)−0.004 (3)
C20.073 (3)0.073 (4)0.051 (3)−0.012 (3)0.018 (3)0.004 (3)
C10.058 (3)0.060 (3)0.043 (3)−0.009 (2)0.011 (2)−0.007 (2)
C130.060 (3)0.045 (3)0.052 (3)0.005 (2)0.022 (2)−0.007 (2)
C170.114 (5)0.059 (4)0.080 (4)0.007 (4)0.049 (4)0.005 (3)
C140.059 (3)0.068 (4)0.070 (3)−0.002 (3)0.022 (3)0.001 (3)
C160.099 (5)0.073 (4)0.107 (5)−0.017 (4)0.059 (4)−0.005 (4)
C100.067 (4)0.071 (4)0.060 (3)0.014 (3)0.004 (3)0.001 (3)
C120.090 (4)0.048 (3)0.053 (3)0.008 (3)0.032 (3)−0.001 (2)
C150.069 (4)0.082 (5)0.097 (5)−0.006 (3)0.032 (4)−0.013 (4)
I1—C12.101 (5)C6—H60.9300
C5—C61.379 (6)C7—H70.9300
C5—C41.387 (6)C3—C21.370 (7)
C5—N11.411 (6)C3—H30.9300
C8—C91.406 (6)C2—C11.381 (7)
C8—C71.428 (6)C2—H20.9300
C8—C131.448 (7)C13—C141.406 (7)
O1—C91.328 (6)C13—C121.408 (7)
O1—H10.8200C17—C161.368 (9)
C9—C101.405 (7)C17—C121.404 (8)
C11—C101.331 (8)C17—H170.9300
C11—C121.416 (7)C14—C151.373 (8)
C11—H110.9300C14—H140.9300
N1—C71.292 (6)C16—C151.361 (9)
C4—C31.370 (8)C16—H160.9300
C4—H40.9300C10—H100.9300
C6—C11.369 (7)C15—H150.9300
C6—C5—C4118.3 (5)C3—C2—H2120.9
C6—C5—N1124.1 (4)C1—C2—H2120.9
C4—C5—N1117.6 (4)C6—C1—C2121.4 (5)
C9—C8—C7119.3 (4)C6—C1—I1119.4 (4)
C9—C8—C13119.1 (4)C2—C1—I1119.2 (4)
C7—C8—C13121.6 (4)C14—C13—C12118.4 (5)
C9—O1—H1109.5C14—C13—C8123.1 (4)
O1—C9—C10117.4 (5)C12—C13—C8118.4 (5)
O1—C9—C8122.4 (5)C16—C17—C12121.5 (6)
C10—C9—C8120.2 (5)C16—C17—H17119.2
C10—C11—C12122.2 (5)C12—C17—H17119.2
C10—C11—H11118.9C15—C14—C13120.3 (5)
C12—C11—H11118.9C15—C14—H14119.9
C7—N1—C5122.3 (4)C13—C14—H14119.9
C3—C4—C5120.9 (5)C15—C16—C17119.3 (6)
C3—C4—H4119.6C15—C16—H16120.4
C5—C4—H4119.6C17—C16—H16120.4
C1—C6—C5120.3 (4)C11—C10—C9120.7 (5)
C1—C6—H6119.8C11—C10—H10119.7
C5—C6—H6119.8C9—C10—H10119.7
N1—C7—C8123.1 (4)C17—C12—C13118.8 (6)
N1—C7—H7118.5C17—C12—C11121.9 (5)
C8—C7—H7118.5C13—C12—C11119.4 (5)
C2—C3—C4120.9 (5)C16—C15—C14121.7 (6)
C2—C3—H3119.6C16—C15—H15119.1
C4—C3—H3119.6C14—C15—H15119.1
C3—C2—C1118.3 (5)
C7—C8—C9—O1−0.8 (7)C7—C8—C13—C141.2 (7)
C13—C8—C9—O1178.7 (4)C9—C8—C13—C121.1 (6)
C7—C8—C9—C10178.8 (4)C7—C8—C13—C12−179.4 (4)
C13—C8—C9—C10−1.7 (7)C12—C13—C14—C150.2 (8)
C6—C5—N1—C716.5 (7)C8—C13—C14—C15179.6 (5)
C4—C5—N1—C7−164.2 (4)C12—C17—C16—C15−0.2 (9)
C6—C5—C4—C30.9 (7)C12—C11—C10—C9−1.1 (9)
N1—C5—C4—C3−178.5 (4)O1—C9—C10—C11−178.7 (5)
C4—C5—C6—C1−0.6 (7)C8—C9—C10—C111.7 (8)
N1—C5—C6—C1178.7 (4)C16—C17—C12—C130.3 (8)
C5—N1—C7—C8−179.0 (4)C16—C17—C12—C11−178.9 (5)
C9—C8—C7—N12.2 (7)C14—C13—C12—C17−0.3 (7)
C13—C8—C7—N1−177.2 (4)C8—C13—C12—C17−179.8 (4)
C5—C4—C3—C2−0.4 (8)C14—C13—C12—C11179.0 (5)
C4—C3—C2—C1−0.3 (8)C8—C13—C12—C11−0.5 (7)
C5—C6—C1—C2−0.1 (7)C10—C11—C12—C17179.7 (5)
C5—C6—C1—I1−178.5 (3)C10—C11—C12—C130.5 (8)
C3—C2—C1—C60.6 (8)C17—C16—C15—C140.1 (9)
C3—C2—C1—I1179.0 (4)C13—C14—C15—C16−0.1 (9)
C9—C8—C13—C14−178.3 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.822.555 (6)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.821.822.555 (6)148
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,4-Diiodo-6-{[4-(morpholin-4-yl)phenyl]iminomethyl}phenol.

Authors:  K Manvizhi; G Chakkaravarthi; G Anbalagan; G Rajagopal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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