Literature DB >> 23125792

2-Amino-4-methyl-4,5,6,7-tetrahydro-1-benzothiophene-3-carbonitrile.

Ashraf Y Khan1, Nikhath Fathima, Mallikarjun B Kalashetti, Noor Shahina Begum, I M Khazi.   

Abstract

In the title compound, C(10)H(12)N(2)S, the thio-phene ring is essentially planar (r.m.s. deviation = 0.0290 Å). The two C atoms of the cyclo-hexene ring (at positions 6 and 7) are disordered over two sets of sites in a 0.810 (5):0.190 (5) ratio. The cyclo-hexene rings in both the major and minor occupancy conformers adopt a half-chair conformation. In the crystal, there are two types of N-H⋯N inter-action. One of these results in centrosymmetric head-to-head dimers corresponding to an R(2) (2)(12) graph-set motif and the other forms a 20-membered macrocyclic ring involving six mol-ecules.

Entities:  

Year:  2012        PMID: 23125792      PMCID: PMC3470379          DOI: 10.1107/S160053681204010X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activities of benzothio­phenes, see: Shetty et al. (2009 ▶). For the crystal structure of a closely related compound, see: Ziaulla et al. (2011 ▶). For graph-set notation of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C10H12N2S M = 192.28 Monoclinic, a = 9.6771 (2) Å b = 7.6364 (2) Å c = 13.8156 (3) Å β = 100.221 (2)° V = 1004.75 (4) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 296 K 0.18 × 0.16 × 0.16 mm

Data collection

Bruker SMART APEX CCD detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.952, T max = 0.957 8861 measured reflections 2195 independent reflections 1812 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.118 S = 1.06 2195 reflections 125 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SMART; data reduction: SAINT-Plus (Bruker, 1998 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681204010X/pv2585sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681204010X/pv2585Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681204010X/pv2585Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H12N2SF(000) = 408
Mr = 192.28Dx = 1.271 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2195 reflections
a = 9.6771 (2) Åθ = 2.1–27.0°
b = 7.6364 (2) ŵ = 0.28 mm1
c = 13.8156 (3) ÅT = 296 K
β = 100.221 (2)°Block, yellow
V = 1004.75 (4) Å30.18 × 0.16 × 0.16 mm
Z = 4
Bruker SMART APEX CCD detector diffractometer2195 independent reflections
Radiation source: fine-focus sealed tube1812 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −12→12
Tmin = 0.952, Tmax = 0.957k = −9→9
8861 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0678P)2 + 0.1371P] where P = (Fo2 + 2Fc2)/3
2195 reflections(Δ/σ)max < 0.001
125 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.71234 (4)0.00203 (5)0.83213 (3)0.05244 (18)
C30.65478 (15)0.14987 (19)0.98594 (10)0.0421 (3)
C10.59583 (16)0.2640 (2)1.04856 (10)0.0472 (4)
N20.54845 (17)0.3532 (2)1.10080 (11)0.0653 (4)
C20.63578 (15)0.17225 (19)0.88557 (10)0.0439 (3)
C90.76862 (16)−0.0986 (2)0.94522 (11)0.0481 (4)
C80.73216 (16)−0.00656 (18)1.01974 (11)0.0420 (3)
N10.57113 (16)0.3034 (2)0.82953 (10)0.0650 (4)
H1A0.53450.38900.85660.078*
H1B0.56660.30140.76680.078*
C100.8661 (2)0.0583 (3)1.18824 (14)0.0791 (6)
H10A0.88370.01681.25490.119*
H10B0.82580.17341.18610.119*
H10C0.95280.06261.16370.119*
C40.76560 (17)−0.0641 (2)1.12553 (12)0.0528 (4)
H40.6773−0.05911.15090.063*0.810 (5)
C50.8427 (2)−0.2719 (2)0.95380 (14)0.0663 (5)
H5A0.9131−0.27400.91180.080*0.810 (5)
H5B0.7762−0.36550.93360.080*0.810 (5)
C70.8107 (4)−0.2568 (4)1.1298 (2)0.0708 (8)0.810 (5)
H7A0.8542−0.28571.19660.085*0.810 (5)
H7B0.7281−0.33001.11230.085*0.810 (5)
C60.9126 (4)−0.2970 (4)1.06146 (19)0.0730 (8)0.810 (5)
H6A0.9452−0.41681.07150.088*0.810 (5)
H6B0.9934−0.22021.07660.088*0.810 (5)
C4'0.76560 (17)−0.0641 (2)1.12553 (12)0.0528 (4)0.00
H4A0.6823−0.09251.15380.063*0.190 (5)
C5'0.8427 (2)−0.2719 (2)0.95380 (14)0.0663 (5)0.00
H5C0.9410−0.25570.94980.080*0.190 (5)
H5D0.8009−0.34850.90060.080*0.190 (5)
C7'0.8760 (17)−0.2149 (18)1.1356 (10)0.0708 (8)0.190 (5)
H7C0.8836−0.26971.19960.085*0.190 (5)
H7D0.9673−0.16791.12970.085*0.190 (5)
C6'0.8294 (17)−0.3534 (17)1.0531 (9)0.0730 (8)0.190 (5)
H6C0.8883−0.45671.06500.088*0.190 (5)
H6D0.7329−0.38821.05280.088*0.190 (5)
U11U22U33U12U13U23
S10.0652 (3)0.0563 (3)0.0354 (2)0.01326 (18)0.00757 (18)−0.00553 (16)
C30.0464 (7)0.0441 (8)0.0358 (7)−0.0006 (6)0.0074 (5)−0.0036 (6)
C10.0574 (9)0.0472 (8)0.0362 (7)0.0016 (7)0.0063 (6)−0.0003 (6)
N20.0859 (11)0.0645 (9)0.0477 (8)0.0141 (8)0.0176 (7)−0.0073 (7)
C20.0486 (8)0.0458 (8)0.0369 (7)0.0041 (6)0.0062 (6)−0.0016 (6)
C90.0532 (8)0.0470 (9)0.0435 (8)0.0064 (7)0.0073 (6)0.0019 (6)
C80.0429 (7)0.0449 (8)0.0373 (8)−0.0026 (6)0.0044 (6)0.0023 (6)
N10.0891 (11)0.0662 (9)0.0391 (7)0.0320 (8)0.0095 (7)0.0061 (6)
C100.0743 (13)0.1082 (17)0.0479 (11)−0.0107 (12)−0.0082 (9)0.0044 (11)
C40.0556 (9)0.0618 (10)0.0413 (8)−0.0008 (8)0.0095 (7)0.0107 (8)
C50.0798 (12)0.0545 (10)0.0669 (12)0.0193 (9)0.0196 (9)0.0058 (9)
C70.083 (2)0.0661 (16)0.0646 (14)0.0052 (14)0.0166 (15)0.0268 (12)
C60.0775 (19)0.0668 (16)0.0730 (15)0.0256 (14)0.0090 (14)0.0181 (12)
C4'0.0556 (9)0.0618 (10)0.0413 (8)−0.0008 (8)0.0095 (7)0.0107 (8)
C5'0.0798 (12)0.0545 (10)0.0669 (12)0.0193 (9)0.0196 (9)0.0058 (9)
C7'0.083 (2)0.0661 (16)0.0646 (14)0.0052 (14)0.0166 (15)0.0268 (12)
C6'0.0775 (19)0.0668 (16)0.0730 (15)0.0256 (14)0.0090 (14)0.0181 (12)
S1—C21.7256 (14)C4—C71.533 (3)
S1—C91.7397 (16)C4—H40.9800
C3—C21.3768 (19)C5—C61.533 (3)
C3—C11.417 (2)C5—H5A0.9700
C3—C81.443 (2)C5—H5B0.9700
C1—N21.146 (2)C7—C61.513 (5)
C2—N11.3499 (19)C7—H7A0.9700
C9—C81.345 (2)C7—H7B0.9700
C9—C51.500 (2)C6—H6A0.9700
C8—C41.505 (2)C6—H6B0.9700
N1—H1A0.8600C7'—C6'1.56 (2)
N1—H1B0.8600C7'—H7C0.9700
C10—C41.507 (3)C7'—H7D0.9700
C10—H10A0.9600C6'—H6C0.9700
C10—H10B0.9600C6'—H6D0.9700
C10—H10C0.9600
C2—S1—C992.20 (7)C10—C4—H4106.5
C2—C3—C1122.84 (14)C7—C4—H4106.5
C2—C3—C8113.43 (13)C9—C5—C6108.02 (16)
C1—C3—C8123.61 (13)C9—C5—H5A110.1
N2—C1—C3178.40 (17)C6—C5—H5A110.1
N1—C2—C3129.43 (14)C9—C5—H5B110.1
N1—C2—S1120.27 (11)C6—C5—H5B110.1
C3—C2—S1110.29 (11)H5A—C5—H5B108.4
C8—C9—C5125.99 (15)C6—C7—C4112.5 (2)
C8—C9—S1111.95 (12)C6—C7—H7A109.1
C5—C9—S1122.00 (12)C4—C7—H7A109.1
C9—C8—C3112.13 (14)C6—C7—H7B109.1
C9—C8—C4123.39 (14)C4—C7—H7B109.1
C3—C8—C4124.46 (14)H7A—C7—H7B107.8
C2—N1—H1A120.0C7—C6—C5110.9 (3)
C2—N1—H1B120.0C7—C6—H6A109.5
H1A—N1—H1B120.0C5—C6—H6A109.5
C4—C10—H10A109.5C7—C6—H6B109.5
C4—C10—H10B109.5C5—C6—H6B109.5
H10A—C10—H10B109.5H6A—C6—H6B108.1
C4—C10—H10C109.5C6'—C7'—H7C109.8
H10A—C10—H10C109.5C6'—C7'—H7D109.8
H10B—C10—H10C109.5H7C—C7'—H7D108.3
C8—C4—C10112.49 (15)C7'—C6'—H6C110.0
C8—C4—C7109.16 (16)C7'—C6'—H6D110.0
C10—C4—C7115.0 (2)H6C—C6'—H6D108.4
C8—C4—H4106.5
C2—C3—C1—N2158 (6)C2—C3—C8—C9−0.47 (19)
C8—C3—C1—N2−17 (6)C1—C3—C8—C9175.63 (14)
C1—C3—C2—N15.0 (3)C2—C3—C8—C4−178.94 (14)
C8—C3—C2—N1−178.86 (16)C1—C3—C8—C4−2.8 (2)
C1—C3—C2—S1−176.09 (12)C9—C8—C4—C10114.82 (19)
C8—C3—C2—S10.05 (16)C3—C8—C4—C10−66.9 (2)
C9—S1—C2—N1179.29 (14)C9—C8—C4—C7−14.1 (3)
C9—S1—C2—C30.28 (12)C3—C8—C4—C7164.16 (19)
C2—S1—C9—C8−0.56 (13)C8—C9—C5—C6−18.6 (3)
C2—S1—C9—C5176.80 (15)S1—C9—C5—C6164.40 (18)
C5—C9—C8—C3−176.56 (16)C8—C4—C7—C644.6 (3)
S1—C9—C8—C30.67 (17)C10—C4—C7—C6−82.9 (3)
C5—C9—C8—C41.9 (3)C4—C7—C6—C5−64.8 (4)
S1—C9—C8—C4179.16 (12)C9—C5—C6—C747.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N2i0.862.243.088 (2)167
N1—H1B···N2ii0.862.563.349 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯N2i 0.862.243.088 (2)167
N1—H1B⋯N2ii 0.862.563.349 (2)153

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Amino-6-methyl-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carbonitrile.

Authors:  Mohamed Ziaulla; Afshan Banu; Noor Shahina Begum; Shridhar I Panchamukhi; I M Khazi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-23
  2 in total

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