| Literature DB >> 23125792 |
Ashraf Y Khan1, Nikhath Fathima, Mallikarjun B Kalashetti, Noor Shahina Begum, I M Khazi.
Abstract
In the title compound, C(10)H(12)N(2)S, the thio-phene ring is essentially planar (r.m.s. deviation = 0.0290 Å). The two C atoms of the cyclo-hexene ring (at positions 6 and 7) are disordered over two sets of sites in a 0.810 (5):0.190 (5) ratio. The cyclo-hexene rings in both the major and minor occupancy conformers adopt a half-chair conformation. In the crystal, there are two types of N-H⋯N inter-action. One of these results in centrosymmetric head-to-head dimers corresponding to an R(2) (2)(12) graph-set motif and the other forms a 20-membered macrocyclic ring involving six mol-ecules.Entities:
Year: 2012 PMID: 23125792 PMCID: PMC3470379 DOI: 10.1107/S160053681204010X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H12N2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2195 reflections |
| θ = 2.1–27.0° | |
| µ = 0.28 mm−1 | |
| β = 100.221 (2)° | Block, yellow |
| 0.18 × 0.16 × 0.16 mm | |
| Bruker SMART APEX CCD detector diffractometer | 2195 independent reflections |
| Radiation source: fine-focus sealed tube | 1812 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 27.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 8861 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2195 reflections | (Δ/σ)max < 0.001 |
| 125 parameters | Δρmax = 0.16 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| S1 | 0.71234 (4) | 0.00203 (5) | 0.83213 (3) | 0.05244 (18) | |
| C3 | 0.65478 (15) | 0.14987 (19) | 0.98594 (10) | 0.0421 (3) | |
| C1 | 0.59583 (16) | 0.2640 (2) | 1.04856 (10) | 0.0472 (4) | |
| N2 | 0.54845 (17) | 0.3532 (2) | 1.10080 (11) | 0.0653 (4) | |
| C2 | 0.63578 (15) | 0.17225 (19) | 0.88557 (10) | 0.0439 (3) | |
| C9 | 0.76862 (16) | −0.0986 (2) | 0.94522 (11) | 0.0481 (4) | |
| C8 | 0.73216 (16) | −0.00656 (18) | 1.01974 (11) | 0.0420 (3) | |
| N1 | 0.57113 (16) | 0.3034 (2) | 0.82953 (10) | 0.0650 (4) | |
| H1A | 0.5345 | 0.3890 | 0.8566 | 0.078* | |
| H1B | 0.5666 | 0.3014 | 0.7668 | 0.078* | |
| C10 | 0.8661 (2) | 0.0583 (3) | 1.18824 (14) | 0.0791 (6) | |
| H10A | 0.8837 | 0.0168 | 1.2549 | 0.119* | |
| H10B | 0.8258 | 0.1734 | 1.1861 | 0.119* | |
| H10C | 0.9528 | 0.0626 | 1.1637 | 0.119* | |
| C4 | 0.76560 (17) | −0.0641 (2) | 1.12553 (12) | 0.0528 (4) | |
| H4 | 0.6773 | −0.0591 | 1.1509 | 0.063* | 0.810 (5) |
| C5 | 0.8427 (2) | −0.2719 (2) | 0.95380 (14) | 0.0663 (5) | |
| H5A | 0.9131 | −0.2740 | 0.9118 | 0.080* | 0.810 (5) |
| H5B | 0.7762 | −0.3655 | 0.9336 | 0.080* | 0.810 (5) |
| C7 | 0.8107 (4) | −0.2568 (4) | 1.1298 (2) | 0.0708 (8) | 0.810 (5) |
| H7A | 0.8542 | −0.2857 | 1.1966 | 0.085* | 0.810 (5) |
| H7B | 0.7281 | −0.3300 | 1.1123 | 0.085* | 0.810 (5) |
| C6 | 0.9126 (4) | −0.2970 (4) | 1.06146 (19) | 0.0730 (8) | 0.810 (5) |
| H6A | 0.9452 | −0.4168 | 1.0715 | 0.088* | 0.810 (5) |
| H6B | 0.9934 | −0.2202 | 1.0766 | 0.088* | 0.810 (5) |
| C4' | 0.76560 (17) | −0.0641 (2) | 1.12553 (12) | 0.0528 (4) | 0.00 |
| H4A | 0.6823 | −0.0925 | 1.1538 | 0.063* | 0.190 (5) |
| C5' | 0.8427 (2) | −0.2719 (2) | 0.95380 (14) | 0.0663 (5) | 0.00 |
| H5C | 0.9410 | −0.2557 | 0.9498 | 0.080* | 0.190 (5) |
| H5D | 0.8009 | −0.3485 | 0.9006 | 0.080* | 0.190 (5) |
| C7' | 0.8760 (17) | −0.2149 (18) | 1.1356 (10) | 0.0708 (8) | 0.190 (5) |
| H7C | 0.8836 | −0.2697 | 1.1996 | 0.085* | 0.190 (5) |
| H7D | 0.9673 | −0.1679 | 1.1297 | 0.085* | 0.190 (5) |
| C6' | 0.8294 (17) | −0.3534 (17) | 1.0531 (9) | 0.0730 (8) | 0.190 (5) |
| H6C | 0.8883 | −0.4567 | 1.0650 | 0.088* | 0.190 (5) |
| H6D | 0.7329 | −0.3882 | 1.0528 | 0.088* | 0.190 (5) |
| S1 | 0.0652 (3) | 0.0563 (3) | 0.0354 (2) | 0.01326 (18) | 0.00757 (18) | −0.00553 (16) |
| C3 | 0.0464 (7) | 0.0441 (8) | 0.0358 (7) | −0.0006 (6) | 0.0074 (5) | −0.0036 (6) |
| C1 | 0.0574 (9) | 0.0472 (8) | 0.0362 (7) | 0.0016 (7) | 0.0063 (6) | −0.0003 (6) |
| N2 | 0.0859 (11) | 0.0645 (9) | 0.0477 (8) | 0.0141 (8) | 0.0176 (7) | −0.0073 (7) |
| C2 | 0.0486 (8) | 0.0458 (8) | 0.0369 (7) | 0.0041 (6) | 0.0062 (6) | −0.0016 (6) |
| C9 | 0.0532 (8) | 0.0470 (9) | 0.0435 (8) | 0.0064 (7) | 0.0073 (6) | 0.0019 (6) |
| C8 | 0.0429 (7) | 0.0449 (8) | 0.0373 (8) | −0.0026 (6) | 0.0044 (6) | 0.0023 (6) |
| N1 | 0.0891 (11) | 0.0662 (9) | 0.0391 (7) | 0.0320 (8) | 0.0095 (7) | 0.0061 (6) |
| C10 | 0.0743 (13) | 0.1082 (17) | 0.0479 (11) | −0.0107 (12) | −0.0082 (9) | 0.0044 (11) |
| C4 | 0.0556 (9) | 0.0618 (10) | 0.0413 (8) | −0.0008 (8) | 0.0095 (7) | 0.0107 (8) |
| C5 | 0.0798 (12) | 0.0545 (10) | 0.0669 (12) | 0.0193 (9) | 0.0196 (9) | 0.0058 (9) |
| C7 | 0.083 (2) | 0.0661 (16) | 0.0646 (14) | 0.0052 (14) | 0.0166 (15) | 0.0268 (12) |
| C6 | 0.0775 (19) | 0.0668 (16) | 0.0730 (15) | 0.0256 (14) | 0.0090 (14) | 0.0181 (12) |
| C4' | 0.0556 (9) | 0.0618 (10) | 0.0413 (8) | −0.0008 (8) | 0.0095 (7) | 0.0107 (8) |
| C5' | 0.0798 (12) | 0.0545 (10) | 0.0669 (12) | 0.0193 (9) | 0.0196 (9) | 0.0058 (9) |
| C7' | 0.083 (2) | 0.0661 (16) | 0.0646 (14) | 0.0052 (14) | 0.0166 (15) | 0.0268 (12) |
| C6' | 0.0775 (19) | 0.0668 (16) | 0.0730 (15) | 0.0256 (14) | 0.0090 (14) | 0.0181 (12) |
| S1—C2 | 1.7256 (14) | C4—C7 | 1.533 (3) |
| S1—C9 | 1.7397 (16) | C4—H4 | 0.9800 |
| C3—C2 | 1.3768 (19) | C5—C6 | 1.533 (3) |
| C3—C1 | 1.417 (2) | C5—H5A | 0.9700 |
| C3—C8 | 1.443 (2) | C5—H5B | 0.9700 |
| C1—N2 | 1.146 (2) | C7—C6 | 1.513 (5) |
| C2—N1 | 1.3499 (19) | C7—H7A | 0.9700 |
| C9—C8 | 1.345 (2) | C7—H7B | 0.9700 |
| C9—C5 | 1.500 (2) | C6—H6A | 0.9700 |
| C8—C4 | 1.505 (2) | C6—H6B | 0.9700 |
| N1—H1A | 0.8600 | C7'—C6' | 1.56 (2) |
| N1—H1B | 0.8600 | C7'—H7C | 0.9700 |
| C10—C4 | 1.507 (3) | C7'—H7D | 0.9700 |
| C10—H10A | 0.9600 | C6'—H6C | 0.9700 |
| C10—H10B | 0.9600 | C6'—H6D | 0.9700 |
| C10—H10C | 0.9600 | ||
| C2—S1—C9 | 92.20 (7) | C10—C4—H4 | 106.5 |
| C2—C3—C1 | 122.84 (14) | C7—C4—H4 | 106.5 |
| C2—C3—C8 | 113.43 (13) | C9—C5—C6 | 108.02 (16) |
| C1—C3—C8 | 123.61 (13) | C9—C5—H5A | 110.1 |
| N2—C1—C3 | 178.40 (17) | C6—C5—H5A | 110.1 |
| N1—C2—C3 | 129.43 (14) | C9—C5—H5B | 110.1 |
| N1—C2—S1 | 120.27 (11) | C6—C5—H5B | 110.1 |
| C3—C2—S1 | 110.29 (11) | H5A—C5—H5B | 108.4 |
| C8—C9—C5 | 125.99 (15) | C6—C7—C4 | 112.5 (2) |
| C8—C9—S1 | 111.95 (12) | C6—C7—H7A | 109.1 |
| C5—C9—S1 | 122.00 (12) | C4—C7—H7A | 109.1 |
| C9—C8—C3 | 112.13 (14) | C6—C7—H7B | 109.1 |
| C9—C8—C4 | 123.39 (14) | C4—C7—H7B | 109.1 |
| C3—C8—C4 | 124.46 (14) | H7A—C7—H7B | 107.8 |
| C2—N1—H1A | 120.0 | C7—C6—C5 | 110.9 (3) |
| C2—N1—H1B | 120.0 | C7—C6—H6A | 109.5 |
| H1A—N1—H1B | 120.0 | C5—C6—H6A | 109.5 |
| C4—C10—H10A | 109.5 | C7—C6—H6B | 109.5 |
| C4—C10—H10B | 109.5 | C5—C6—H6B | 109.5 |
| H10A—C10—H10B | 109.5 | H6A—C6—H6B | 108.1 |
| C4—C10—H10C | 109.5 | C6'—C7'—H7C | 109.8 |
| H10A—C10—H10C | 109.5 | C6'—C7'—H7D | 109.8 |
| H10B—C10—H10C | 109.5 | H7C—C7'—H7D | 108.3 |
| C8—C4—C10 | 112.49 (15) | C7'—C6'—H6C | 110.0 |
| C8—C4—C7 | 109.16 (16) | C7'—C6'—H6D | 110.0 |
| C10—C4—C7 | 115.0 (2) | H6C—C6'—H6D | 108.4 |
| C8—C4—H4 | 106.5 | ||
| C2—C3—C1—N2 | 158 (6) | C2—C3—C8—C9 | −0.47 (19) |
| C8—C3—C1—N2 | −17 (6) | C1—C3—C8—C9 | 175.63 (14) |
| C1—C3—C2—N1 | 5.0 (3) | C2—C3—C8—C4 | −178.94 (14) |
| C8—C3—C2—N1 | −178.86 (16) | C1—C3—C8—C4 | −2.8 (2) |
| C1—C3—C2—S1 | −176.09 (12) | C9—C8—C4—C10 | 114.82 (19) |
| C8—C3—C2—S1 | 0.05 (16) | C3—C8—C4—C10 | −66.9 (2) |
| C9—S1—C2—N1 | 179.29 (14) | C9—C8—C4—C7 | −14.1 (3) |
| C9—S1—C2—C3 | 0.28 (12) | C3—C8—C4—C7 | 164.16 (19) |
| C2—S1—C9—C8 | −0.56 (13) | C8—C9—C5—C6 | −18.6 (3) |
| C2—S1—C9—C5 | 176.80 (15) | S1—C9—C5—C6 | 164.40 (18) |
| C5—C9—C8—C3 | −176.56 (16) | C8—C4—C7—C6 | 44.6 (3) |
| S1—C9—C8—C3 | 0.67 (17) | C10—C4—C7—C6 | −82.9 (3) |
| C5—C9—C8—C4 | 1.9 (3) | C4—C7—C6—C5 | −64.8 (4) |
| S1—C9—C8—C4 | 179.16 (12) | C9—C5—C6—C7 | 47.9 (3) |
| H··· | ||||
| N1—H1 | 0.86 | 2.24 | 3.088 (2) | 167 |
| N1—H1 | 0.86 | 2.56 | 3.349 (2) | 153 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.24 | 3.088 (2) | 167 |
| N1—H1 | 0.86 | 2.56 | 3.349 (2) | 153 |
Symmetry codes: (i) ; (ii) .