| Literature DB >> 21522444 |
Mohamed Ziaulla, Afshan Banu, Noor Shahina Begum, Shridhar I Panchamukhi, I M Khazi.
Abstract
In the title compound, C(10)H(12)N(2)S, one of the C atoms of the cyclo-hexene ring (at position 6) and the methyl group attached to it are disordered over two sets of sites in a 0.650 (3):0.350 (3) ratio. The cyclo-hexene ring in both the major and minor occupancy conformers adopts a half-chair conformation. The thio-phene ring is essentially planar (r.m.s. deviation = 0.05 Å). In the crystal, N-H⋯N hydrogen bonds involving the amino groups result in inversion dimers with R(2) (2)(12) graph-set motif. Further N-H⋯N hydrogen bonds involving the amino and carbonitrile groups generate zigzag chains along the a axis.Entities:
Year: 2011 PMID: 21522444 PMCID: PMC3051984 DOI: 10.1107/S1600536811006076
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H12N2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2441 reflections |
| θ = 2.9–29.2° | |
| µ = 0.28 mm−1 | |
| β = 90.169 (2)° | Block, yellow |
| 0.16 × 0.16 × 0.14 mm | |
| Bruker SMART APEX CCD detector diffractometer | 2441 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1878 reflections with |
| graphite | |
| ω scans | θmax = 29.2°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 11284 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2441 reflections | (Δ/σ)max = 0.001 |
| 127 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Experimental. The compound was synthesized by following the procedure given in NitinKumar
|
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| S1 | 0.68698 (5) | 0.02703 (5) | 0.34885 (3) | 0.02519 (15) | |
| N1 | 0.5603 (2) | −0.40456 (18) | 0.60740 (11) | 0.0378 (4) | |
| N2 | 0.54766 (17) | −0.25706 (17) | 0.33230 (10) | 0.0292 (4) | |
| H2A | 0.5129 | −0.3480 | 0.3565 | 0.035* | |
| H2B | 0.5362 | −0.2336 | 0.2674 | 0.035* | |
| C1 | 0.5991 (2) | −0.3000 (2) | 0.55684 (12) | 0.0263 (4) | |
| C2 | 0.64719 (19) | −0.16794 (19) | 0.49726 (12) | 0.0224 (4) | |
| C3 | 0.61829 (18) | −0.15372 (19) | 0.39455 (12) | 0.0217 (3) | |
| C4 | 0.75534 (19) | 0.0810 (2) | 0.46849 (12) | 0.0251 (4) | |
| C5 | 0.72696 (19) | −0.0328 (2) | 0.53858 (12) | 0.0236 (4) | |
| C6 | 0.7762 (2) | −0.0180 (2) | 0.64700 (13) | 0.0303 (4) | |
| H6A | 0.8312 | −0.1158 | 0.6670 | 0.036* | |
| H6B | 0.6885 | −0.0088 | 0.6916 | 0.036* | |
| C7 | 0.8734 (3) | 0.1266 (3) | 0.66129 (16) | 0.0514 (6) | |
| H7A | 0.8688 | 0.1572 | 0.7341 | 0.062* | 0.650 (3) |
| H7B | 0.9764 | 0.0931 | 0.6474 | 0.062* | 0.650 (3) |
| C8 | 0.8387 (2) | 0.2343 (2) | 0.48637 (13) | 0.0328 (4) | |
| H8A | 0.7892 | 0.3236 | 0.4500 | 0.039* | 0.650 (3) |
| H8B | 0.9405 | 0.2241 | 0.4596 | 0.039* | 0.650 (3) |
| C9A | 0.8440 (3) | 0.2705 (3) | 0.6012 (2) | 0.0296 (5) | 0.650 (3) |
| H9AA | 0.7434 | 0.3094 | 0.6209 | 0.036* | 0.650 (3) |
| C10A | 0.9518 (5) | 0.4053 (5) | 0.6248 (3) | 0.0429 (10) | 0.650 (3) |
| H10A | 0.9544 | 0.4241 | 0.6985 | 0.064* | 0.650 (3) |
| H10B | 0.9199 | 0.5034 | 0.5900 | 0.064* | 0.650 (3) |
| H10C | 1.0508 | 0.3753 | 0.6013 | 0.064* | 0.650 (3) |
| H7C | 0.8128 | 0.2072 | 0.6977 | 0.062* | 0.350 (3) |
| H7D | 0.9527 | 0.0937 | 0.7091 | 0.062* | 0.350 (3) |
| H8C | 0.7690 | 0.3238 | 0.4988 | 0.039* | 0.350 (3) |
| H8D | 0.8997 | 0.2611 | 0.4262 | 0.039* | 0.350 (3) |
| C9B | 0.9414 (6) | 0.2065 (6) | 0.5837 (4) | 0.0296 (5) | 0.350 (3) |
| H9BA | 1.0221 | 0.1334 | 0.5601 | 0.036* | 0.350 (3) |
| C10B | 1.0183 (9) | 0.3644 (11) | 0.6111 (7) | 0.0429 (10) | 0.350 (3) |
| H10D | 0.9449 | 0.4508 | 0.6140 | 0.064* | 0.350 (3) |
| H10E | 1.0924 | 0.3897 | 0.5592 | 0.064* | 0.350 (3) |
| H10F | 1.0669 | 0.3537 | 0.6775 | 0.064* | 0.350 (3) |
| S1 | 0.0327 (3) | 0.0257 (2) | 0.0171 (2) | −0.00706 (18) | −0.00294 (16) | 0.00388 (16) |
| N1 | 0.0684 (12) | 0.0241 (8) | 0.0207 (8) | −0.0089 (8) | −0.0066 (7) | 0.0026 (6) |
| N2 | 0.0453 (9) | 0.0247 (8) | 0.0175 (7) | −0.0093 (7) | −0.0035 (6) | 0.0003 (6) |
| C1 | 0.0395 (10) | 0.0207 (8) | 0.0187 (8) | −0.0005 (7) | −0.0035 (7) | −0.0027 (7) |
| C2 | 0.0287 (9) | 0.0203 (8) | 0.0183 (8) | 0.0000 (7) | −0.0001 (6) | 0.0010 (6) |
| C3 | 0.0241 (8) | 0.0207 (8) | 0.0203 (8) | −0.0003 (6) | 0.0011 (6) | 0.0004 (6) |
| C4 | 0.0296 (9) | 0.0270 (9) | 0.0185 (8) | −0.0053 (7) | −0.0033 (7) | 0.0010 (7) |
| C5 | 0.0263 (9) | 0.0243 (8) | 0.0202 (8) | −0.0017 (7) | −0.0011 (7) | 0.0004 (7) |
| C6 | 0.0427 (11) | 0.0294 (9) | 0.0189 (9) | −0.0041 (8) | −0.0057 (7) | 0.0030 (7) |
| C7 | 0.0744 (17) | 0.0471 (13) | 0.0327 (11) | −0.0244 (12) | −0.0248 (11) | 0.0067 (9) |
| C8 | 0.0418 (11) | 0.0330 (10) | 0.0237 (9) | −0.0159 (8) | −0.0040 (8) | 0.0028 (7) |
| C9A | 0.0321 (14) | 0.0302 (13) | 0.0265 (12) | −0.0074 (10) | −0.0027 (11) | −0.0028 (10) |
| C10A | 0.047 (3) | 0.052 (2) | 0.0294 (16) | −0.029 (2) | −0.0007 (19) | −0.0052 (15) |
| C7A | 0.0744 (17) | 0.0471 (13) | 0.0327 (11) | −0.0244 (12) | −0.0248 (11) | 0.0067 (9) |
| C8A | 0.0418 (11) | 0.0330 (10) | 0.0237 (9) | −0.0159 (8) | −0.0040 (8) | 0.0028 (7) |
| C9B | 0.0321 (14) | 0.0302 (13) | 0.0265 (12) | −0.0074 (10) | −0.0027 (11) | −0.0028 (10) |
| C10B | 0.047 (3) | 0.052 (2) | 0.0294 (16) | −0.029 (2) | −0.0007 (19) | −0.0052 (15) |
| S1—C3 | 1.7363 (16) | C7—H7A | 0.9900 |
| S1—C4 | 1.7451 (17) | C7—H7B | 0.9900 |
| N1—C1 | 1.150 (2) | C8—C9A | 1.538 (3) |
| N2—C3 | 1.347 (2) | C8—H8A | 0.9900 |
| N2—H2A | 0.8800 | C8—H8B | 0.9900 |
| N2—H2B | 0.8800 | C9A—C10A | 1.519 (5) |
| C1—C2 | 1.419 (2) | C9A—H9AA | 1.0000 |
| C2—C3 | 1.378 (2) | C10A—H10A | 0.9800 |
| C2—C5 | 1.442 (2) | C10A—H10B | 0.9800 |
| C4—C5 | 1.346 (2) | C10A—H10C | 0.9800 |
| C4—C8 | 1.501 (2) | C9B—C10B | 1.530 (10) |
| C5—C6 | 1.495 (2) | C9B—H9BA | 1.0000 |
| C6—C7 | 1.502 (3) | C10B—H10D | 0.9800 |
| C6—H6A | 0.9900 | C10B—H10E | 0.9800 |
| C6—H6B | 0.9900 | C10B—H10F | 0.9800 |
| C7—C9A | 1.459 (3) | ||
| C3—S1—C4 | 92.20 (8) | C9A—C7—H7A | 107.6 |
| C3—N2—H2A | 120.0 | C6—C7—H7A | 107.6 |
| C3—N2—H2B | 120.0 | C9A—C7—H7B | 107.6 |
| H2A—N2—H2B | 120.0 | C6—C7—H7B | 107.6 |
| N1—C1—C2 | 178.19 (17) | H7A—C7—H7B | 107.0 |
| C3—C2—C1 | 123.28 (15) | C4—C8—C9A | 109.52 (16) |
| C3—C2—C5 | 113.22 (14) | C4—C8—H8A | 109.8 |
| C1—C2—C5 | 123.47 (14) | C9A—C8—H8A | 109.8 |
| N2—C3—C2 | 128.84 (15) | C4—C8—H8B | 109.8 |
| N2—C3—S1 | 120.93 (12) | C9A—C8—H8B | 109.8 |
| C2—C3—S1 | 110.22 (12) | H8A—C8—H8B | 108.2 |
| C5—C4—C8 | 126.07 (15) | C7—C9A—C10A | 112.4 (3) |
| C5—C4—S1 | 111.48 (13) | C7—C9A—C8 | 112.0 (2) |
| C8—C4—S1 | 122.42 (12) | C10A—C9A—C8 | 111.3 (2) |
| C4—C5—C2 | 112.86 (15) | C7—C9A—H9AA | 106.9 |
| C4—C5—C6 | 122.40 (15) | C10A—C9A—H9AA | 106.9 |
| C2—C5—C6 | 124.73 (15) | C8—C9A—H9AA | 106.9 |
| C5—C6—C7 | 110.93 (15) | C10B—C9B—H9BA | 105.4 |
| C5—C6—H6A | 109.5 | C9B—C10B—H10D | 109.5 |
| C7—C6—H6A | 109.5 | C9B—C10B—H10E | 109.5 |
| C5—C6—H6B | 109.5 | H10D—C10B—H10E | 109.5 |
| C7—C6—H6B | 109.5 | C9B—C10B—H10F | 109.5 |
| H6A—C6—H6B | 108.0 | H10D—C10B—H10F | 109.5 |
| C9A—C7—C6 | 119.06 (19) | H10E—C10B—H10F | 109.5 |
| C1—C2—C3—N2 | −2.3 (3) | C1—C2—C5—C4 | −177.32 (17) |
| C5—C2—C3—N2 | 179.55 (17) | C3—C2—C5—C6 | −178.44 (17) |
| C1—C2—C3—S1 | 177.36 (14) | C1—C2—C5—C6 | 3.4 (3) |
| C5—C2—C3—S1 | −0.78 (19) | C4—C5—C6—C7 | −6.7 (3) |
| C4—S1—C3—N2 | −179.86 (15) | C2—C5—C6—C7 | 172.46 (19) |
| C4—S1—C3—C2 | 0.45 (13) | C5—C6—C7—C9A | 34.4 (3) |
| C3—S1—C4—C5 | 0.01 (14) | C5—C4—C8—C9A | −18.3 (3) |
| C3—S1—C4—C8 | 178.33 (16) | S1—C4—C8—C9A | 163.68 (16) |
| C8—C4—C5—C2 | −178.70 (17) | C6—C7—C9A—C10A | 179.9 (3) |
| S1—C4—C5—C2 | −0.5 (2) | C6—C7—C9A—C8 | −53.9 (3) |
| C8—C4—C5—C6 | 0.6 (3) | C4—C8—C9A—C7 | 42.0 (3) |
| S1—C4—C5—C6 | 178.83 (14) | C4—C8—C9A—C10A | 168.8 (3) |
| C3—C2—C5—C4 | 0.8 (2) |
| H··· | ||||
| N2—H2A···N1i | 0.88 | 2.22 | 3.087 (2) | 170 |
| N2—H2B···N1ii | 0.88 | 2.41 | 3.247 (2) | 160 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.88 | 2.22 | 3.087 (2) | 170 |
| N2—H2 | 0.88 | 2.41 | 3.247 (2) | 160 |
Symmetry codes: (i) ; (ii) .