Literature DB >> 21522444

2-Amino-6-methyl-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carbonitrile.

Mohamed Ziaulla, Afshan Banu, Noor Shahina Begum, Shridhar I Panchamukhi, I M Khazi.   

Abstract

In the title compound, C(10)H(12)N(2)S, one of the C atoms of the cyclo-hexene ring (at position 6) and the methyl group attached to it are disordered over two sets of sites in a 0.650 (3):0.350 (3) ratio. The cyclo-hexene ring in both the major and minor occupancy conformers adopts a half-chair conformation. The thio-phene ring is essentially planar (r.m.s. deviation = 0.05 Å). In the crystal, N-H⋯N hydrogen bonds involving the amino groups result in inversion dimers with R(2) (2)(12) graph-set motif. Further N-H⋯N hydrogen bonds involving the amino and carbonitrile groups generate zigzag chains along the a axis.

Entities:  

Year:  2011        PMID: 21522444      PMCID: PMC3051984          DOI: 10.1107/S1600536811006076

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For preparation of the title compound, see: Shetty et al. (2009 ▶). For general background to benzothio­phenes, see: Katritzky et al. (1996 ▶); Shishoo & Jain (1992 ▶). For related structures, see: Akkurt et al. (2008 ▶); Harrison et al. (2006 ▶); Vasu et al. (2004 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C10H12N2S M = 192.29 Monoclinic, a = 9.0415 (2) Å b = 8.3294 (2) Å c = 13.1283 (3) Å β = 90.169 (2)° V = 988.69 (4) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 123 K 0.16 × 0.16 × 0.14 mm

Data collection

Bruker SMART APEX CCD detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.957, T max = 0.962 11284 measured reflections 2441 independent reflections 1878 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.107 S = 1.07 2441 reflections 127 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811006076/pv2384sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006076/pv2384Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H12N2SF(000) = 408
Mr = 192.29Dx = 1.292 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2441 reflections
a = 9.0415 (2) Åθ = 2.9–29.2°
b = 8.3294 (2) ŵ = 0.28 mm1
c = 13.1283 (3) ÅT = 123 K
β = 90.169 (2)°Block, yellow
V = 988.69 (4) Å30.16 × 0.16 × 0.14 mm
Z = 4
Bruker SMART APEX CCD detector diffractometer2441 independent reflections
Radiation source: Enhance (Mo) X-ray Source1878 reflections with I > 2σ(I)
graphiteRint = 0.039
ω scansθmax = 29.2°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −11→12
Tmin = 0.957, Tmax = 0.962k = −11→10
11284 measured reflectionsl = −17→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0536P)2 + 0.2028P] where P = (Fo2 + 2Fc2)/3
2441 reflections(Δ/σ)max = 0.001
127 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. The compound was synthesized by following the procedure given in NitinKumar et al., (2009)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.68698 (5)0.02703 (5)0.34885 (3)0.02519 (15)
N10.5603 (2)−0.40456 (18)0.60740 (11)0.0378 (4)
N20.54766 (17)−0.25706 (17)0.33230 (10)0.0292 (4)
H2A0.5129−0.34800.35650.035*
H2B0.5362−0.23360.26740.035*
C10.5991 (2)−0.3000 (2)0.55684 (12)0.0263 (4)
C20.64719 (19)−0.16794 (19)0.49726 (12)0.0224 (4)
C30.61829 (18)−0.15372 (19)0.39455 (12)0.0217 (3)
C40.75534 (19)0.0810 (2)0.46849 (12)0.0251 (4)
C50.72696 (19)−0.0328 (2)0.53858 (12)0.0236 (4)
C60.7762 (2)−0.0180 (2)0.64700 (13)0.0303 (4)
H6A0.8312−0.11580.66700.036*
H6B0.6885−0.00880.69160.036*
C70.8734 (3)0.1266 (3)0.66129 (16)0.0514 (6)
H7A0.86880.15720.73410.062*0.650 (3)
H7B0.97640.09310.64740.062*0.650 (3)
C80.8387 (2)0.2343 (2)0.48637 (13)0.0328 (4)
H8A0.78920.32360.45000.039*0.650 (3)
H8B0.94050.22410.45960.039*0.650 (3)
C9A0.8440 (3)0.2705 (3)0.6012 (2)0.0296 (5)0.650 (3)
H9AA0.74340.30940.62090.036*0.650 (3)
C10A0.9518 (5)0.4053 (5)0.6248 (3)0.0429 (10)0.650 (3)
H10A0.95440.42410.69850.064*0.650 (3)
H10B0.91990.50340.59000.064*0.650 (3)
H10C1.05080.37530.60130.064*0.650 (3)
H7C0.81280.20720.69770.062*0.350 (3)
H7D0.95270.09370.70910.062*0.350 (3)
H8C0.76900.32380.49880.039*0.350 (3)
H8D0.89970.26110.42620.039*0.350 (3)
C9B0.9414 (6)0.2065 (6)0.5837 (4)0.0296 (5)0.350 (3)
H9BA1.02210.13340.56010.036*0.350 (3)
C10B1.0183 (9)0.3644 (11)0.6111 (7)0.0429 (10)0.350 (3)
H10D0.94490.45080.61400.064*0.350 (3)
H10E1.09240.38970.55920.064*0.350 (3)
H10F1.06690.35370.67750.064*0.350 (3)
U11U22U33U12U13U23
S10.0327 (3)0.0257 (2)0.0171 (2)−0.00706 (18)−0.00294 (16)0.00388 (16)
N10.0684 (12)0.0241 (8)0.0207 (8)−0.0089 (8)−0.0066 (7)0.0026 (6)
N20.0453 (9)0.0247 (8)0.0175 (7)−0.0093 (7)−0.0035 (6)0.0003 (6)
C10.0395 (10)0.0207 (8)0.0187 (8)−0.0005 (7)−0.0035 (7)−0.0027 (7)
C20.0287 (9)0.0203 (8)0.0183 (8)0.0000 (7)−0.0001 (6)0.0010 (6)
C30.0241 (8)0.0207 (8)0.0203 (8)−0.0003 (6)0.0011 (6)0.0004 (6)
C40.0296 (9)0.0270 (9)0.0185 (8)−0.0053 (7)−0.0033 (7)0.0010 (7)
C50.0263 (9)0.0243 (8)0.0202 (8)−0.0017 (7)−0.0011 (7)0.0004 (7)
C60.0427 (11)0.0294 (9)0.0189 (9)−0.0041 (8)−0.0057 (7)0.0030 (7)
C70.0744 (17)0.0471 (13)0.0327 (11)−0.0244 (12)−0.0248 (11)0.0067 (9)
C80.0418 (11)0.0330 (10)0.0237 (9)−0.0159 (8)−0.0040 (8)0.0028 (7)
C9A0.0321 (14)0.0302 (13)0.0265 (12)−0.0074 (10)−0.0027 (11)−0.0028 (10)
C10A0.047 (3)0.052 (2)0.0294 (16)−0.029 (2)−0.0007 (19)−0.0052 (15)
C7A0.0744 (17)0.0471 (13)0.0327 (11)−0.0244 (12)−0.0248 (11)0.0067 (9)
C8A0.0418 (11)0.0330 (10)0.0237 (9)−0.0159 (8)−0.0040 (8)0.0028 (7)
C9B0.0321 (14)0.0302 (13)0.0265 (12)−0.0074 (10)−0.0027 (11)−0.0028 (10)
C10B0.047 (3)0.052 (2)0.0294 (16)−0.029 (2)−0.0007 (19)−0.0052 (15)
S1—C31.7363 (16)C7—H7A0.9900
S1—C41.7451 (17)C7—H7B0.9900
N1—C11.150 (2)C8—C9A1.538 (3)
N2—C31.347 (2)C8—H8A0.9900
N2—H2A0.8800C8—H8B0.9900
N2—H2B0.8800C9A—C10A1.519 (5)
C1—C21.419 (2)C9A—H9AA1.0000
C2—C31.378 (2)C10A—H10A0.9800
C2—C51.442 (2)C10A—H10B0.9800
C4—C51.346 (2)C10A—H10C0.9800
C4—C81.501 (2)C9B—C10B1.530 (10)
C5—C61.495 (2)C9B—H9BA1.0000
C6—C71.502 (3)C10B—H10D0.9800
C6—H6A0.9900C10B—H10E0.9800
C6—H6B0.9900C10B—H10F0.9800
C7—C9A1.459 (3)
C3—S1—C492.20 (8)C9A—C7—H7A107.6
C3—N2—H2A120.0C6—C7—H7A107.6
C3—N2—H2B120.0C9A—C7—H7B107.6
H2A—N2—H2B120.0C6—C7—H7B107.6
N1—C1—C2178.19 (17)H7A—C7—H7B107.0
C3—C2—C1123.28 (15)C4—C8—C9A109.52 (16)
C3—C2—C5113.22 (14)C4—C8—H8A109.8
C1—C2—C5123.47 (14)C9A—C8—H8A109.8
N2—C3—C2128.84 (15)C4—C8—H8B109.8
N2—C3—S1120.93 (12)C9A—C8—H8B109.8
C2—C3—S1110.22 (12)H8A—C8—H8B108.2
C5—C4—C8126.07 (15)C7—C9A—C10A112.4 (3)
C5—C4—S1111.48 (13)C7—C9A—C8112.0 (2)
C8—C4—S1122.42 (12)C10A—C9A—C8111.3 (2)
C4—C5—C2112.86 (15)C7—C9A—H9AA106.9
C4—C5—C6122.40 (15)C10A—C9A—H9AA106.9
C2—C5—C6124.73 (15)C8—C9A—H9AA106.9
C5—C6—C7110.93 (15)C10B—C9B—H9BA105.4
C5—C6—H6A109.5C9B—C10B—H10D109.5
C7—C6—H6A109.5C9B—C10B—H10E109.5
C5—C6—H6B109.5H10D—C10B—H10E109.5
C7—C6—H6B109.5C9B—C10B—H10F109.5
H6A—C6—H6B108.0H10D—C10B—H10F109.5
C9A—C7—C6119.06 (19)H10E—C10B—H10F109.5
C1—C2—C3—N2−2.3 (3)C1—C2—C5—C4−177.32 (17)
C5—C2—C3—N2179.55 (17)C3—C2—C5—C6−178.44 (17)
C1—C2—C3—S1177.36 (14)C1—C2—C5—C63.4 (3)
C5—C2—C3—S1−0.78 (19)C4—C5—C6—C7−6.7 (3)
C4—S1—C3—N2−179.86 (15)C2—C5—C6—C7172.46 (19)
C4—S1—C3—C20.45 (13)C5—C6—C7—C9A34.4 (3)
C3—S1—C4—C50.01 (14)C5—C4—C8—C9A−18.3 (3)
C3—S1—C4—C8178.33 (16)S1—C4—C8—C9A163.68 (16)
C8—C4—C5—C2−178.70 (17)C6—C7—C9A—C10A179.9 (3)
S1—C4—C5—C2−0.5 (2)C6—C7—C9A—C8−53.9 (3)
C8—C4—C5—C60.6 (3)C4—C8—C9A—C742.0 (3)
S1—C4—C5—C6178.83 (14)C4—C8—C9A—C10A168.8 (3)
C3—C2—C5—C40.8 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N1i0.882.223.087 (2)170
N2—H2B···N1ii0.882.413.247 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯N1i0.882.223.087 (2)170
N2—H2B⋯N1ii0.882.413.247 (2)160

Symmetry codes: (i) ; (ii) .

  3 in total

1.  2-[(E)-(4-Chlorophenyl)methyleneamino]-N-(X-methylphenyl)-4,5,6,7-tetrahydro-1-benzothiophene-3-carboxamide, where X = 2 and 3.

Authors:  K A Nirmala; Deepak Chopra; S Mohan; J Saravanan
Journal:  Acta Crystallogr C       Date:  2004-10-09       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Methyl 2-(2-hydroxy-benzyl-ideneamino)-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Authors:  Mehmet Akkurt; Selvi Karaca; Abdullah Mohamed Asiri; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-18
  3 in total
  1 in total

1.  2-Amino-4-methyl-4,5,6,7-tetrahydro-1-benzothiophene-3-carbonitrile.

Authors:  Ashraf Y Khan; Nikhath Fathima; Mallikarjun B Kalashetti; Noor Shahina Begum; I M Khazi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26
  1 in total

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