Literature DB >> 23125789

Propan-2-yl r-4-(4-fluoro-phen-yl)-3-hy-droxy-c-6-methyl-2-phenyl-4,5-dihydro-2H-indazole-t-5-carboxyl-ate.

S Rizwana Begum1, R Hema, K Pandiarajan, Sridhar Balasubramanian, A G Anitha.   

Abstract

In the title compound, C(24)H(23)FN(2)O(3), the cyclo-hexene ring adopts a screw-boat conformation. The fluorobenzene ring attached to the cyclo-hexene ring and the phenyl ring attached to the indazole moiety are inclined to one another by 57.77 (13)°. In the crystal, mol-ecules are linked by O-H⋯N and C-H⋯O hydrogen bonds, forming chains with C(5) and C(10) graph-set motifs. There are also C-H⋯π inter-actions present. The isopropoxycarbonyl group undergoes considerable thermal motion.

Entities:  

Year:  2012        PMID: 23125789      PMCID: PMC3470376          DOI: 10.1107/S1600536812039955

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For examples of the biological activities of indazole derivatatives, see: Jain et al. (1987 ▶); Palazzo et al. (1966 ▶); Popat et al. (2003 ▶); Beylin et al. (1991 ▶); George et al. (1998 ▶); Roman (1990 ▶). For the crystal structure of a similar compound, namely 4,6-bis­(4-fluoro­phen­yl)-2-phenyl-1H-indazol-3(2H)-one, see: Butcher et al. (2011 ▶). For information on graph-set motifs, see: Bernstein et al. (1995 ▶). For information on ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C24H23FN2O3 M = 406.44 Monoclinic, a = 17.640 (1) Å b = 11.0295 (6) Å c = 11.3791 (6) Å β = 99.133 (1)° V = 2185.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.35 × 0.25 × 0.25 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 20548 measured reflections 3843 independent reflections 2970 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.135 S = 1.03 3843 reflections 279 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97, PLATON and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812039955/su2500sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039955/su2500Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039955/su2500Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H23FN2O3F(000) = 856
Mr = 406.44Dx = 1.235 Mg m3
Monoclinic, P2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3844 reflections
a = 17.640 (1) Åθ = 2–25°
b = 11.0295 (6) ŵ = 0.09 mm1
c = 11.3791 (6) ÅT = 293 K
β = 99.133 (1)°Block, colourless
V = 2185.9 (2) Å30.35 × 0.25 × 0.25 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2970 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
Graphite monochromatorθmax = 25.0°, θmin = 2.2°
ω scanh = −20→20
20548 measured reflectionsk = −13→13
3843 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0586P)2 + 0.9373P] where P = (Fo2 + 2Fc2)/3
3843 reflections(Δ/σ)max < 0.001
279 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F0.55203 (11)0.4061 (2)0.2222 (2)0.1378 (9)
O10.14456 (9)0.32293 (13)0.05959 (11)0.0505 (4)
H10.16090.29410.12520.076*
O510.26507 (13)−0.19468 (16)−0.01810 (17)0.0885 (6)
O520.2223 (4)−0.1001 (5)0.1280 (9)0.116 (2)0.724 (15)
O52'0.1999 (12)−0.0778 (13)0.0673 (18)0.116 (2)0.276 (15)
N20.14598 (9)0.28868 (14)−0.13981 (12)0.0369 (4)
N10.18599 (9)0.22532 (14)−0.21440 (12)0.0386 (4)
C30.17400 (10)0.26286 (16)−0.02333 (14)0.0356 (4)
C40.28913 (11)0.12354 (17)0.07402 (16)0.0376 (4)
H40.26380.10760.14310.045*
C50.31565 (12)0.00027 (17)0.02803 (17)0.0430 (5)
H50.3642−0.02020.07880.052*
C60.33235 (12)0.00401 (18)−0.09910 (18)0.0453 (5)
C70.29229 (12)0.07767 (18)−0.17831 (17)0.0443 (5)
H70.30040.0767−0.25710.053*
C80.23623 (10)0.15914 (16)−0.14217 (15)0.0362 (4)
C90.23134 (10)0.17912 (16)−0.02211 (15)0.0351 (4)
C210.08425 (11)0.36638 (17)−0.18736 (16)0.0396 (4)
C220.09024 (13)0.4340 (2)−0.28730 (18)0.0538 (6)
H220.13420.4292−0.32260.065*
C230.03079 (16)0.5085 (2)−0.3344 (2)0.0722 (7)
H230.03470.5539−0.40210.087*
C24−0.03366 (17)0.5169 (3)−0.2835 (3)0.0826 (9)
H24−0.07380.5671−0.31650.099*
C25−0.03905 (15)0.4505 (3)−0.1829 (3)0.0794 (8)
H25−0.08280.4571−0.14720.095*
C260.01950 (13)0.3744 (2)−0.1345 (2)0.0589 (6)
H260.01540.3289−0.06690.071*
C410.35810 (11)0.20446 (17)0.11368 (17)0.0424 (5)
C420.40331 (13)0.1842 (2)0.2224 (2)0.0575 (6)
H420.38980.12320.27150.069*
C430.46809 (15)0.2525 (3)0.2599 (3)0.0768 (8)
H430.49800.23820.33350.092*
C440.48710 (16)0.3400 (3)0.1879 (3)0.0832 (9)
C450.44411 (19)0.3651 (3)0.0811 (3)0.0933 (10)
H450.45820.42700.03350.112*
C460.37878 (15)0.2966 (2)0.0444 (2)0.0690 (7)
H460.34850.3134−0.02840.083*
C510.25938 (15)−0.0996 (2)0.0456 (2)0.0570 (6)
C520.2159 (2)−0.3005 (3)−0.0069 (3)0.0973 (11)
H520.2039−0.30450.07420.117*
C530.1431 (3)−0.2891 (4)−0.0942 (4)0.1460 (17)
H53A0.1171−0.2157−0.07860.219*
H53B0.1105−0.3574−0.08610.219*
H53C0.1550−0.2868−0.17360.219*
C540.2622 (3)−0.4083 (3)−0.0300 (5)0.176 (2)
H54A0.2719−0.4060−0.11060.264*
H54B0.2344−0.4809−0.01770.264*
H54C0.3101−0.40760.02350.264*
C610.39422 (15)−0.0780 (2)−0.1293 (2)0.0732 (8)
H61A0.3978−0.0699−0.21220.110*
H61B0.3821−0.1605−0.11270.110*
H61C0.4424−0.0562−0.08230.110*
U11U22U33U12U13U23
F0.0942 (13)0.1364 (18)0.175 (2)−0.0579 (13)−0.0032 (13)−0.0562 (16)
O10.0724 (10)0.0546 (9)0.0250 (7)0.0222 (7)0.0091 (6)0.0010 (6)
O510.1363 (17)0.0548 (11)0.0841 (13)−0.0338 (11)0.0475 (12)−0.0155 (9)
O520.190 (5)0.060 (2)0.130 (5)−0.038 (2)0.120 (5)−0.015 (3)
O52'0.190 (5)0.060 (2)0.130 (5)−0.038 (2)0.120 (5)−0.015 (3)
N20.0446 (9)0.0414 (9)0.0246 (7)0.0058 (7)0.0059 (6)0.0001 (6)
N10.0469 (9)0.0430 (9)0.0267 (8)0.0047 (7)0.0086 (7)−0.0009 (7)
C30.0464 (11)0.0372 (10)0.0232 (9)−0.0012 (8)0.0061 (8)−0.0001 (7)
C40.0446 (11)0.0376 (10)0.0310 (9)0.0030 (8)0.0069 (8)0.0035 (8)
C50.0473 (11)0.0386 (11)0.0419 (11)0.0041 (9)0.0038 (9)0.0050 (8)
C60.0508 (12)0.0374 (11)0.0502 (12)0.0023 (9)0.0156 (10)−0.0006 (9)
C70.0554 (12)0.0447 (11)0.0358 (10)0.0026 (10)0.0167 (9)−0.0001 (9)
C80.0424 (10)0.0357 (10)0.0308 (9)−0.0002 (8)0.0069 (8)0.0005 (8)
C90.0421 (10)0.0347 (10)0.0278 (9)0.0000 (8)0.0039 (8)0.0007 (7)
C210.0466 (11)0.0391 (10)0.0318 (9)0.0043 (9)0.0020 (8)−0.0020 (8)
C220.0616 (14)0.0564 (13)0.0436 (12)0.0109 (11)0.0086 (10)0.0102 (10)
C230.0874 (19)0.0681 (17)0.0581 (15)0.0247 (15)0.0020 (14)0.0201 (12)
C240.0769 (19)0.0825 (19)0.084 (2)0.0399 (16)−0.0019 (15)0.0140 (16)
C250.0602 (16)0.097 (2)0.0829 (19)0.0294 (15)0.0176 (14)0.0055 (17)
C260.0548 (13)0.0712 (16)0.0519 (13)0.0120 (12)0.0126 (11)0.0084 (11)
C410.0474 (11)0.0405 (11)0.0393 (10)0.0046 (9)0.0064 (9)−0.0047 (9)
C420.0580 (14)0.0562 (14)0.0531 (13)0.0080 (11)−0.0070 (11)−0.0061 (11)
C430.0652 (17)0.0789 (19)0.0766 (18)0.0082 (15)−0.0182 (14)−0.0249 (16)
C440.0624 (17)0.084 (2)0.100 (2)−0.0204 (15)0.0017 (16)−0.0396 (19)
C450.106 (2)0.086 (2)0.089 (2)−0.0484 (19)0.0201 (19)−0.0070 (17)
C460.0818 (17)0.0691 (16)0.0535 (14)−0.0267 (14)0.0024 (12)0.0025 (12)
C510.0759 (16)0.0414 (12)0.0585 (14)0.0012 (11)0.0251 (12)0.0012 (10)
C520.142 (3)0.0652 (19)0.088 (2)−0.047 (2)0.029 (2)−0.0090 (16)
C530.155 (4)0.104 (3)0.172 (4)−0.040 (3)0.003 (3)−0.014 (3)
C540.198 (5)0.054 (2)0.274 (7)−0.019 (3)0.033 (5)−0.004 (3)
C610.0776 (17)0.0674 (16)0.0804 (18)0.0276 (14)0.0305 (14)0.0079 (14)
F—C441.361 (3)C23—H230.9300
O1—C31.325 (2)C24—C251.375 (4)
O1—H10.8200C24—H240.9300
O51—C511.288 (3)C25—C261.376 (3)
O51—C521.472 (3)C25—H250.9300
O52—C511.225 (7)C26—H260.9300
O52'—C511.142 (18)C41—C461.371 (3)
N2—C31.369 (2)C41—C421.380 (3)
N2—N11.377 (2)C42—C431.378 (4)
N2—C211.423 (2)C42—H420.9300
N1—C81.328 (2)C43—C441.343 (4)
C3—C91.368 (3)C43—H430.9300
C4—C91.502 (2)C44—C451.354 (4)
C4—C411.519 (3)C45—C461.386 (4)
C4—C51.555 (3)C45—H450.9300
C4—H40.9800C46—H460.9300
C5—C511.517 (3)C52—C541.489 (6)
C5—C61.522 (3)C52—C531.499 (5)
C5—H50.9800C52—H520.9800
C6—C71.330 (3)C53—H53A0.9600
C6—C611.499 (3)C53—H53B0.9600
C7—C81.444 (3)C53—H53C0.9600
C7—H70.9300C54—H54A0.9600
C8—C91.400 (2)C54—H54B0.9600
C21—C261.376 (3)C54—H54C0.9600
C21—C221.378 (3)C61—H61A0.9600
C22—C231.372 (3)C61—H61B0.9600
C22—H220.9300C61—H61C0.9600
C23—C241.358 (4)
C3—O1—H1109.5C25—C26—H26120.5
C51—O51—C52119.8 (2)C46—C41—C42117.8 (2)
C3—N2—N1110.45 (14)C46—C41—C4122.59 (18)
C3—N2—C21129.06 (15)C42—C41—C4119.56 (19)
N1—N2—C21120.48 (14)C43—C42—C41121.5 (2)
C8—N1—N2104.75 (13)C43—C42—H42119.3
O1—C3—C9134.69 (16)C41—C42—H42119.3
O1—C3—N2117.61 (16)C44—C43—C42118.6 (3)
C9—C3—N2107.64 (15)C44—C43—H43120.7
C9—C4—C41113.30 (15)C42—C43—H43120.7
C9—C4—C5108.49 (15)C43—C44—C45122.4 (3)
C41—C4—C5110.14 (15)C43—C44—F119.3 (3)
C9—C4—H4108.3C45—C44—F118.3 (3)
C41—C4—H4108.3C44—C45—C46118.7 (3)
C5—C4—H4108.3C44—C45—H45120.7
C51—C5—C6111.98 (17)C46—C45—H45120.7
C51—C5—C4110.64 (16)C41—C46—C45121.0 (3)
C6—C5—C4114.21 (15)C41—C46—H46119.5
C51—C5—H5106.5C45—C46—H46119.5
C6—C5—H5106.5O52'—C51—O5238.2 (9)
C4—C5—H5106.5O52'—C51—O51116.8 (8)
C7—C6—C61122.76 (19)O52—C51—O51121.7 (3)
C7—C6—C5119.90 (17)O52'—C51—C5121.2 (7)
C61—C6—C5117.34 (18)O52—C51—C5123.0 (3)
C6—C7—C8120.09 (17)O51—C51—C5114.0 (2)
C6—C7—H7120.0O51—C52—C54105.7 (3)
C8—C7—H7120.0O51—C52—C53109.3 (3)
N1—C8—C9112.28 (16)C54—C52—C53112.7 (3)
N1—C8—C7125.88 (16)O51—C52—H52109.7
C9—C8—C7121.81 (17)C54—C52—H52109.7
C3—C9—C8104.85 (15)C53—C52—H52109.7
C3—C9—C4134.26 (16)C52—C53—H53A109.5
C8—C9—C4120.43 (16)C52—C53—H53B109.5
C26—C21—C22120.27 (19)H53A—C53—H53B109.5
C26—C21—N2120.68 (18)C52—C53—H53C109.5
C22—C21—N2119.04 (18)H53A—C53—H53C109.5
C23—C22—C21119.5 (2)H53B—C53—H53C109.5
C23—C22—H22120.2C52—C54—H54A109.5
C21—C22—H22120.2C52—C54—H54B109.5
C24—C23—C22120.9 (2)H54A—C54—H54B109.5
C24—C23—H23119.5C52—C54—H54C109.5
C22—C23—H23119.5H54A—C54—H54C109.5
C23—C24—C25119.5 (2)H54B—C54—H54C109.5
C23—C24—H24120.3C6—C61—H61A109.5
C25—C24—H24120.3C6—C61—H61B109.5
C24—C25—C26120.8 (2)H61A—C61—H61B109.5
C24—C25—H25119.6C6—C61—H61C109.5
C26—C25—H25119.6H61A—C61—H61C109.5
C21—C26—C25119.1 (2)H61B—C61—H61C109.5
C21—C26—H26120.5
C3—N2—N1—C81.81 (19)N1—N2—C21—C22−38.0 (3)
C21—N2—N1—C8−177.34 (16)C26—C21—C22—C23−0.7 (3)
N1—N2—C3—O1175.77 (16)N2—C21—C22—C23179.5 (2)
C21—N2—C3—O1−5.2 (3)C21—C22—C23—C240.3 (4)
N1—N2—C3—C9−1.8 (2)C22—C23—C24—C250.5 (5)
C21—N2—C3—C9177.29 (17)C23—C24—C25—C26−1.1 (5)
C9—C4—C5—C51−83.40 (19)C22—C21—C26—C250.1 (4)
C41—C4—C5—C51152.07 (17)N2—C21—C26—C25180.0 (2)
C9—C4—C5—C644.0 (2)C24—C25—C26—C210.7 (4)
C41—C4—C5—C6−80.5 (2)C9—C4—C41—C46−21.0 (3)
C51—C5—C6—C794.1 (2)C5—C4—C41—C46100.8 (2)
C4—C5—C6—C7−32.6 (3)C9—C4—C41—C42160.39 (18)
C51—C5—C6—C61−85.5 (2)C5—C4—C41—C42−77.9 (2)
C4—C5—C6—C61147.7 (2)C46—C41—C42—C43−1.2 (3)
C61—C6—C7—C8−176.7 (2)C4—C41—C42—C43177.5 (2)
C5—C6—C7—C83.7 (3)C41—C42—C43—C44−0.2 (4)
N2—N1—C8—C9−1.2 (2)C42—C43—C44—C451.4 (5)
N2—N1—C8—C7−179.28 (17)C42—C43—C44—F−178.3 (2)
C6—C7—C8—N1−170.79 (19)C43—C44—C45—C46−0.9 (5)
C6—C7—C8—C911.3 (3)F—C44—C45—C46178.7 (3)
O1—C3—C9—C8−176.0 (2)C42—C41—C46—C451.6 (4)
N2—C3—C9—C81.0 (2)C4—C41—C46—C45−177.0 (2)
O1—C3—C9—C4−4.1 (4)C44—C45—C46—C41−0.6 (5)
N2—C3—C9—C4172.85 (19)C52—O51—C51—O52'−33.0 (12)
N1—C8—C9—C30.2 (2)C52—O51—C51—O5210.8 (7)
C7—C8—C9—C3178.33 (17)C52—O51—C51—C5177.8 (2)
N1—C8—C9—C4−173.10 (16)C6—C5—C51—O52'−114.5 (13)
C7—C8—C9—C45.1 (3)C4—C5—C51—O52'14.1 (13)
C41—C4—C9—C3−80.1 (3)C6—C5—C51—O52−160.0 (6)
C5—C4—C9—C3157.3 (2)C4—C5—C51—O52−31.3 (7)
C41—C4—C9—C890.8 (2)C6—C5—C51—O5133.2 (3)
C5—C4—C9—C8−31.8 (2)C4—C5—C51—O51161.8 (2)
C3—N2—C21—C26−36.8 (3)C51—O51—C52—C54−148.1 (3)
N1—N2—C21—C26142.2 (2)C51—O51—C52—C5390.4 (4)
C3—N2—C21—C22143.1 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.821.822.6143 (18)162
C22—H22···O52ii0.932.563.229 (6)129
C24—H24···Cg1iii0.932.773.694 (3)174
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1/N2/C3/C8/C9 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N1i 0.821.822.6143 (18)162
C22—H22⋯O52ii 0.932.563.229 (6)129
C24—H24⋯Cg1iii 0.932.773.694 (3)174

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  J Med Chem       Date:  1998-06-18       Impact factor: 7.446

4.  4,6-Bis(4-fluoro-phen-yl)-2-phenyl-1H-indazol-3(2H)-one.

Authors:  R J Butcher; M Akkurt; S Samshuddin; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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