Literature DB >> 21754741

4,6-Bis(4-fluoro-phen-yl)-2-phenyl-1H-indazol-3(2H)-one.

R J Butcher, M Akkurt, S Samshuddin, B Narayana, H S Yathirajan.   

Abstract

In the title compound, C(25)H(16)F(2)N(2)O, the pyrazole ring is almost planar (r.m.s. deviation = 0.028 Å) and makes a dihedral angle of 5.86 (11)° with the indazole benzene ring. The dihedral angle between the pyrazole ring and the unsubstituted phenyl ring is 28.19 (11)°. The dihedral angles between the unsubstituted phenyl and the two fluoro-phenyl groups are 57.69 (10) and 18.01 (10)°. In the crystal, mol-ecules are linked by inter-molecular N-H⋯O and C-H⋯F inter-actions, forming infinite chains along the b axis with graph-set motif R(3) (2)(19). The crystal structure is further consolidated by π-π stacking [centroid-centroid distances = 3.5916 (13) and 3.6890 (13) Å] and C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 21754741      PMCID: PMC3120412          DOI: 10.1107/S1600536811016369

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of indazole derivatives, see: Beylin et al. (1991 ▶); George et al. (1998 ▶); Jain et al. (1987 ▶); Palazzo et al. (1966 ▶); Popat et al. (2003 ▶); Roman (1990 ▶). For related structures, see: van der Helm et al. (1979 ▶); Fun et al. (2010 ▶). For hybridization and electron delocalization around N atoms, see: Susindran et al. (2010 ▶); Jin et al. (2004 ▶). For graph-set analysis, see: Etter (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C25H16F2N2O M = 398.40 Orthorhombic, a = 15.2947 (4) Å b = 11.6259 (2) Å c = 20.9388 (5) Å V = 3723.23 (15) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 123 K 0.49 × 0.38 × 0.23 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007 ▶) T min = 0.895, T max = 0.977 19870 measured reflections 3827 independent reflections 3416 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.135 S = 1.09 3827 reflections 275 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.65 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016369/qk2004sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016369/qk2004Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016369/qk2004Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H16F2N2OF(000) = 1648
Mr = 398.40Dx = 1.421 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 11209 reflections
a = 15.2947 (4) Åθ = 5.2–37.5°
b = 11.6259 (2) ŵ = 0.10 mm1
c = 20.9388 (5) ÅT = 123 K
V = 3723.23 (15) Å3Prism, colourless
Z = 80.49 × 0.38 × 0.23 mm
Oxford Diffraction Xcalibur Ruby Gemini diffractometer3827 independent reflections
Radiation source: Enhance (Mo) X-ray Source3416 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 10.5081 pixels mm-1θmax = 26.5°, θmin = 5.2°
ω scansh = −19→19
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007)k = −14→14
Tmin = 0.895, Tmax = 0.977l = −26→26
19870 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0462P)2 + 4.0317P] where P = (Fo2 + 2Fc2)/3
3827 reflections(Δ/σ)max < 0.001
275 parametersΔρmax = 0.65 e Å3
1 restraintΔρmin = −0.35 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.60370 (13)−0.57691 (11)0.22016 (9)0.0656 (6)
F20.48986 (10)0.29173 (14)0.53611 (7)0.0525 (5)
O10.73203 (11)−0.14990 (12)0.11749 (7)0.0351 (5)
N10.72290 (11)0.04878 (13)0.11220 (7)0.0239 (5)
N20.68782 (11)0.13815 (13)0.14893 (8)0.0241 (5)
C10.70924 (15)−0.05733 (16)0.14107 (9)0.0269 (6)
C20.66455 (14)−0.03003 (16)0.20027 (9)0.0272 (6)
C30.63295 (16)−0.10034 (17)0.25063 (10)0.0323 (6)
C40.60213 (13)−0.04532 (16)0.30476 (9)0.0246 (5)
C50.60116 (12)0.07752 (16)0.31012 (9)0.0230 (5)
C60.62766 (13)0.14448 (16)0.25935 (9)0.0248 (6)
C70.65858 (13)0.08914 (16)0.20431 (9)0.0241 (5)
C80.62753 (14)−0.22733 (16)0.24316 (9)0.0257 (6)
C90.58886 (14)−0.27250 (18)0.18834 (10)0.0291 (6)
C100.57996 (15)−0.3901 (2)0.18045 (11)0.0355 (7)
C110.61074 (16)−0.46066 (17)0.22766 (12)0.0382 (7)
C120.64919 (16)−0.42035 (19)0.28203 (12)0.0391 (7)
C130.65705 (15)−0.30264 (18)0.28970 (10)0.0315 (6)
C140.57027 (12)0.13239 (17)0.37010 (9)0.0246 (6)
C150.58997 (14)0.08541 (18)0.42973 (10)0.0302 (6)
C160.56348 (15)0.1384 (2)0.48586 (10)0.0365 (7)
C170.51680 (14)0.2389 (2)0.48129 (10)0.0355 (7)
C180.49559 (14)0.28874 (19)0.42389 (11)0.0338 (6)
C190.52226 (13)0.23481 (18)0.36821 (10)0.0280 (6)
C200.74707 (13)0.07083 (15)0.04813 (9)0.0216 (5)
C210.71378 (14)0.16740 (16)0.01763 (9)0.0257 (6)
C220.73814 (15)0.19020 (17)−0.04494 (9)0.0303 (6)
C230.79396 (15)0.11777 (17)−0.07719 (10)0.0303 (6)
C240.82668 (15)0.02163 (18)−0.04644 (10)0.0320 (6)
C250.80400 (13)−0.00225 (17)0.01629 (10)0.0279 (6)
HN20.7174 (14)0.2009 (14)0.1477 (12)0.038 (7)*
H40.58140−0.089400.338600.0300*
H60.625100.224300.261500.0300*
H90.56880−0.223000.156700.0350*
H100.55380−0.420300.144000.0430*
H120.66960−0.470700.313100.0470*
H130.68250−0.273600.326700.0380*
H150.621500.017100.431900.0360*
H160.577000.106700.525400.0440*
H180.464100.357100.422400.0400*
H190.508000.267200.328900.0340*
H210.675500.216300.038900.0310*
H220.716500.25530−0.065400.0360*
H230.809600.13330−0.119200.0360*
H240.86430−0.02760−0.068100.0380*
H250.82670−0.066600.036800.0330*
U11U22U33U12U13U23
F10.0954 (13)0.0186 (7)0.0829 (12)−0.0145 (7)0.0149 (10)−0.0064 (7)
F20.0579 (9)0.0652 (10)0.0345 (7)0.0125 (8)0.0096 (7)−0.0210 (7)
O10.0646 (11)0.0155 (7)0.0251 (7)0.0055 (7)0.0088 (7)0.0007 (6)
N10.0364 (9)0.0141 (7)0.0213 (8)0.0030 (7)0.0009 (7)−0.0001 (6)
N20.0366 (9)0.0142 (7)0.0216 (8)0.0004 (7)0.0023 (7)−0.0007 (6)
C10.0440 (12)0.0172 (9)0.0195 (9)0.0009 (8)0.0002 (8)0.0024 (7)
C20.0421 (11)0.0179 (9)0.0216 (9)0.0008 (8)0.0008 (8)−0.0011 (7)
C30.0489 (13)0.0216 (10)0.0265 (10)−0.0039 (9)0.0052 (9)0.0002 (8)
C40.0311 (10)0.0216 (9)0.0210 (9)−0.0026 (8)0.0005 (8)0.0014 (7)
C50.0253 (9)0.0225 (9)0.0213 (9)0.0023 (7)−0.0030 (8)−0.0027 (7)
C60.0344 (11)0.0149 (8)0.0250 (10)0.0026 (7)−0.0019 (8)−0.0011 (7)
C70.0326 (10)0.0177 (9)0.0220 (9)−0.0008 (8)−0.0024 (8)0.0011 (7)
C80.0365 (11)0.0184 (9)0.0222 (9)−0.0025 (8)0.0058 (8)−0.0002 (7)
C90.0345 (11)0.0292 (10)0.0237 (10)0.0015 (9)0.0011 (9)0.0034 (8)
C100.0384 (12)0.0360 (12)0.0321 (11)−0.0130 (10)0.0035 (9)−0.0104 (9)
C110.0496 (14)0.0153 (9)0.0496 (14)−0.0070 (9)0.0130 (11)−0.0019 (9)
C120.0503 (14)0.0262 (11)0.0407 (13)0.0018 (10)0.0019 (11)0.0134 (10)
C130.0417 (12)0.0291 (11)0.0238 (10)−0.0061 (9)−0.0023 (9)0.0046 (8)
C140.0247 (9)0.0246 (10)0.0244 (10)−0.0009 (7)−0.0005 (8)−0.0038 (8)
C150.0351 (11)0.0303 (10)0.0253 (10)0.0051 (9)0.0007 (9)−0.0019 (8)
C160.0419 (13)0.0449 (13)0.0228 (10)0.0039 (10)0.0002 (9)−0.0021 (9)
C170.0329 (11)0.0451 (13)0.0284 (11)0.0006 (10)0.0059 (9)−0.0150 (10)
C180.0283 (10)0.0330 (11)0.0400 (12)0.0068 (9)0.0025 (9)−0.0083 (10)
C190.0261 (10)0.0292 (10)0.0287 (10)0.0027 (8)−0.0029 (8)−0.0039 (8)
C200.0276 (9)0.0180 (9)0.0191 (9)−0.0041 (7)−0.0018 (7)0.0010 (7)
C210.0368 (11)0.0191 (9)0.0213 (9)0.0043 (8)−0.0013 (8)−0.0022 (7)
C220.0479 (13)0.0206 (9)0.0223 (10)0.0003 (9)−0.0040 (9)0.0026 (8)
C230.0452 (12)0.0243 (10)0.0215 (9)−0.0072 (9)0.0054 (9)0.0021 (8)
C240.0370 (11)0.0273 (11)0.0318 (11)0.0024 (9)0.0095 (9)−0.0007 (9)
C250.0317 (10)0.0221 (9)0.0298 (10)0.0028 (8)0.0011 (8)0.0037 (8)
F1—C111.365 (2)C15—C161.387 (3)
F2—C171.366 (3)C16—C171.373 (3)
O1—C11.234 (2)C17—C181.373 (3)
N1—N21.400 (2)C18—C191.385 (3)
N1—C11.390 (2)C20—C251.387 (3)
N1—C201.415 (2)C20—C211.388 (3)
N2—C71.367 (3)C21—C221.388 (3)
N2—HN20.859 (18)C22—C231.376 (3)
C1—C21.451 (3)C23—C241.384 (3)
C2—C31.419 (3)C24—C251.387 (3)
C2—C71.391 (3)C4—H40.9300
C3—C41.384 (3)C6—H60.9300
C3—C81.487 (3)C9—H90.9300
C4—C51.433 (3)C10—H100.9300
C5—C141.486 (3)C12—H120.9300
C5—C61.379 (3)C13—H130.9300
C6—C71.402 (3)C15—H150.9300
C8—C131.386 (3)C16—H160.9300
C8—C91.394 (3)C18—H180.9300
C9—C101.384 (3)C19—H190.9300
C10—C111.368 (3)C21—H210.9300
C11—C121.364 (3)C22—H220.9300
C12—C131.383 (3)C23—H230.9300
C14—C151.396 (3)C24—H240.9300
C14—C191.400 (3)C25—H250.9300
N2—N1—C1111.25 (15)C17—C18—C19118.4 (2)
N2—N1—C20119.12 (14)C14—C19—C18121.05 (19)
C1—N1—C20127.78 (15)N1—C20—C21119.13 (17)
N1—N2—C7106.38 (14)C21—C20—C25120.29 (18)
C7—N2—HN2123.5 (17)N1—C20—C25120.58 (17)
N1—N2—HN2114.3 (15)C20—C21—C22119.36 (18)
N1—C1—C2104.38 (15)C21—C22—C23120.86 (19)
O1—C1—C2131.73 (18)C22—C23—C24119.36 (19)
O1—C1—N1123.89 (18)C23—C24—C25120.8 (2)
C1—C2—C3132.02 (18)C20—C25—C24119.32 (18)
C1—C2—C7107.51 (16)C3—C4—H4119.00
C3—C2—C7120.41 (18)C5—C4—H4119.00
C2—C3—C4117.28 (18)C5—C6—H6121.00
C4—C3—C8121.73 (18)C7—C6—H6121.00
C2—C3—C8120.85 (18)C8—C9—H9120.00
C3—C4—C5121.89 (18)C10—C9—H9120.00
C4—C5—C6119.97 (17)C9—C10—H10121.00
C4—C5—C14119.84 (17)C11—C10—H10121.00
C6—C5—C14120.19 (17)C11—C12—H12121.00
C5—C6—C7118.29 (17)C13—C12—H12121.00
C2—C7—C6121.95 (17)C8—C13—H13120.00
N2—C7—C6128.04 (17)C12—C13—H13119.00
N2—C7—C2110.00 (16)C14—C15—H15119.00
C3—C8—C13122.36 (18)C16—C15—H15119.00
C9—C8—C13118.64 (18)C15—C16—H16121.00
C3—C8—C9118.97 (18)C17—C16—H16121.00
C8—C9—C10120.81 (19)C17—C18—H18121.00
C9—C10—C11118.2 (2)C19—C18—H18121.00
F1—C11—C10118.9 (2)C14—C19—H19119.00
C10—C11—C12123.0 (2)C18—C19—H19119.00
F1—C11—C12118.0 (2)C20—C21—H21120.00
C11—C12—C13118.3 (2)C22—C21—H21120.00
C8—C13—C12121.0 (2)C21—C22—H22120.00
C15—C14—C19118.13 (18)C23—C22—H22119.00
C5—C14—C15121.30 (18)C22—C23—H23120.00
C5—C14—C19120.55 (17)C24—C23—H23120.00
C14—C15—C16121.40 (19)C23—C24—H24120.00
C15—C16—C17118.1 (2)C25—C24—H24120.00
F2—C17—C18118.3 (2)C20—C25—H25120.00
C16—C17—C18122.9 (2)C24—C25—H25120.00
F2—C17—C16118.77 (19)
C1—N1—N2—C75.3 (2)C6—C5—C14—C1935.8 (3)
C20—N1—N2—C7171.01 (17)C4—C5—C14—C19−143.24 (19)
N2—N1—C1—O1178.1 (2)C4—C5—C6—C7−2.7 (3)
C20—N1—C1—O114.0 (3)C4—C5—C14—C1538.4 (3)
N2—N1—C1—C2−1.4 (2)C5—C6—C7—N2179.9 (2)
C20—N1—C1—C2−165.57 (19)C5—C6—C7—C2−1.2 (3)
C1—N1—C20—C25−35.8 (3)C3—C8—C9—C10−177.9 (2)
N2—N1—C20—C21−18.2 (3)C3—C8—C13—C12178.4 (2)
C1—N1—C20—C21144.9 (2)C9—C8—C13—C120.5 (3)
N2—N1—C20—C25161.15 (18)C13—C8—C9—C100.1 (3)
N1—N2—C7—C6171.78 (19)C8—C9—C10—C11−0.5 (3)
N1—N2—C7—C2−7.2 (2)C9—C10—C11—F1−179.0 (2)
N1—C1—C2—C3−180.0 (2)C9—C10—C11—C120.4 (4)
N1—C1—C2—C7−3.0 (2)C10—C11—C12—C130.2 (4)
O1—C1—C2—C30.5 (4)F1—C11—C12—C13179.6 (2)
O1—C1—C2—C7177.5 (2)C11—C12—C13—C8−0.7 (4)
C1—C2—C7—C6−172.62 (19)C19—C14—C15—C16−0.4 (3)
C1—C2—C7—N26.4 (2)C5—C14—C19—C18−177.86 (19)
C1—C2—C3—C4172.4 (2)C5—C14—C15—C16178.00 (19)
C3—C2—C7—N2−176.14 (19)C15—C14—C19—C180.5 (3)
C3—C2—C7—C64.8 (3)C14—C15—C16—C170.2 (3)
C7—C2—C3—C8171.4 (2)C15—C16—C17—F2179.7 (2)
C1—C2—C3—C8−11.9 (4)C15—C16—C17—C18−0.1 (3)
C7—C2—C3—C4−4.3 (3)C16—C17—C18—C190.3 (3)
C4—C3—C8—C9127.1 (2)F2—C17—C18—C19−179.50 (19)
C2—C3—C4—C50.5 (3)C17—C18—C19—C14−0.5 (3)
C4—C3—C8—C13−50.8 (3)N1—C20—C21—C22179.20 (18)
C2—C3—C8—C13133.7 (2)C25—C20—C21—C22−0.1 (3)
C2—C3—C8—C9−48.4 (3)N1—C20—C25—C24−179.86 (18)
C8—C3—C4—C5−175.18 (19)C21—C20—C25—C24−0.6 (3)
C3—C4—C5—C63.0 (3)C20—C21—C22—C230.7 (3)
C3—C4—C5—C14−177.90 (19)C21—C22—C23—C24−0.6 (3)
C6—C5—C14—C15−142.5 (2)C22—C23—C24—C25−0.1 (3)
C14—C5—C6—C7178.28 (17)C23—C24—C25—C200.7 (3)
Cg5 is the centroid of the C20–C25 phenyl ring.
D—H···AD—HH···AD···AD—H···A
N2—HN2···O1i0.86 (2)2.00 (2)2.830 (2)162 (2)
C6—H6···F1ii0.932.493.362 (2)156
C21—H21···N20.932.482.799 (3)100
C25—H25···O10.932.432.941 (3)115
C15—H15···Cg5iii0.932.853.656 (2)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg5 is the centroid of the C20–C25 phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—HN2⋯O1i0.86 (2)2.00 (2)2.830 (2)162 (2)
C6—H6⋯F1ii0.932.493.362 (2)156
C15—H15⋯Cg5iii0.932.853.656 (2)145

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  J Med Chem       Date:  1998-06-18       Impact factor: 7.446

6.  (E)-3-(4-Chloro-phen-yl)-3-[3-(4-chloro-phen-yl)-1H-pyrazol-1-yl]prop-2-enal.

Authors:  V Susindran; S Athimoolam; S Asath Bahadur; R Manikannan; S Muthusubramanian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-18

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  3 in total

1.  Ethyl 6-(4-chloro-phen-yl)-4-(4-fluoro-phen-yl)-2-oxo-cyclo-hex-3-ene-1-carboxyl-ate.

Authors:  M Sapnakumari; B Narayana; H S Yathirajan; Jerry P Jasinski; Ray J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-30

2.  Propan-2-yl r-4-(4-fluoro-phen-yl)-3-hy-droxy-c-6-methyl-2-phenyl-4,5-dihydro-2H-indazole-t-5-carboxyl-ate.

Authors:  S Rizwana Begum; R Hema; K Pandiarajan; Sridhar Balasubramanian; A G Anitha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26

3.  Ethyl 6-(4-bromo-phen-yl)-4-(4-fluoro-phen-yl)-2-oxocyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; M Sapnakumari; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-12
  3 in total

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