Literature DB >> 23125769

rac-4-Chloro-2-[({2-[(3-chloro-6-hy-droxy-2,4-dimethyl-benz-yl)(meth-yl)amino]-prop-yl}(meth-yl)amino)-meth-yl]-3,5-dimethyl-phenol.

Augusto Rivera1, Dency José Pacheco, Jaime Ríos-Motta, Mauricio Maldonado, Michael Bolte.   

Abstract

The title compound, C(23)H(32)Cl(2)N(2)O(2), a potential chiral ligand for coordination chemistry, was prepared by a two-step reaction. The mol-ecule is located on a crystallographic centre of inversion. As a result, the methyl group bonded to the methyl-ene group is disordered over two equally occupied positions, sharing the same site as the H atom of the chiral C atom. As a further consequence of the crystallographic centrosymmetry, the 1,2-diamino-propane unit adopts an anti-periplanar conformation and the two benzene rings are coplanar. The central chain is in an all-trans arrangement. An intra-molecular O-H⋯N hydrogen bond makes an S(6) ring motif. A C-H⋯π inter-action links the mol-ecules into one-dimensional chains along the [001] direction.

Entities:  

Year:  2012        PMID: 23125769      PMCID: PMC3470356          DOI: 10.1107/S1600536812039694

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Rivera et al. (2010 ▶); Burke (1949 ▶). For the uses of tetra­hydro­salens in coordination chemistry, see: Atwood (1997 ▶). For related structures, see: Rivera et al. (2011 ▶); Xu et al. (2009 ▶). For reference bond-length data, see: Allen et al. (1987 ▶). For graph-set analysis of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C23H32Cl2N2O2 M = 439.41 Monoclinic, a = 9.5011 (8) Å b = 11.9060 (13) Å c = 9.9824 (9) Å β = 90.348 (7)° V = 1129.19 (19) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 173 K 0.25 × 0.22 × 0.08 mm

Data collection

Stoe IPDS II two-circle diffractometer Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001 ▶) T min = 0.927, T max = 0.976 11151 measured reflections 2055 independent reflections 1758 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.159 S = 1.14 2055 reflections 144 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.59 e Å−3 Δρmin = −0.35 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812039694/go2069sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039694/go2069Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039694/go2069Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H32Cl2N2O2F(000) = 468
Mr = 439.41Dx = 1.292 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 11821 reflections
a = 9.5011 (8) Åθ = 2.4–28.1°
b = 11.9060 (13) ŵ = 0.31 mm1
c = 9.9824 (9) ÅT = 173 K
β = 90.348 (7)°Plate, colourless
V = 1129.19 (19) Å30.25 × 0.22 × 0.08 mm
Z = 2
Stoe IPDS II two-circle diffractometer2055 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source1758 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.074
ω scansθmax = 25.3°, θmin = 3.4°
Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001)h = −11→11
Tmin = 0.927, Tmax = 0.976k = −14→14
11151 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.159H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0629P)2 + 0.952P] where P = (Fo2 + 2Fc2)/3
2055 reflections(Δ/σ)max < 0.001
144 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.35 e Å3
Experimental. 1H NMR (400.1 MHz, CDCl3): δ 1.07 (d, 3J = 6.6 Hz, 3H), 2.18 (s, 3H),2.25 (s, 3H), 2.30 (s, 6H), 2.31 (s, 6H), 2.35 (dd, 2Jgem = 12.6, 3J = 6.9 Hz, 1H), 2.62 (dd, 2Jgem = 12.6, 3J = 6.7 Hz, 1H), 3.03–3.11 (m, 1H), 3.69 (d, 2Jgem = 14.0, 1H), 3.74 (d, 2Jgem = 14.0, 1H), 3.81 (s, 2H), 6.62 (s, 2H) 13C NMR (100.6 MHz, CDCl3): δ 11.17, 16.74, 16.82, 21.22, 21.24, 35.19, 41.9, 53.68, 54.20, 58.57, 60.32, 116.57, 116.58, 118.48, 118.94, 125.26, 125.39, 133.96, 134.04, 136.62, 136.73, 156.76, 156.78. F T—IR (KBr) (ν, cm-1): 3406 (O—H, broad, m), 2960 (CH3asym, st), 2922 (CH2asym, st), 2855 (CH3sym, st), 2802 (CH2sym, st), 1613 (–C=C, st), 1320 (C—N, st), 668 (C—Cl, st).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.74219 (10)0.71021 (8)0.25120 (9)0.0590 (3)
N10.5987 (3)0.54354 (18)0.8459 (2)0.0383 (6)
O10.7205 (2)0.39166 (17)0.6972 (3)0.0485 (6)
H10.687 (5)0.421 (4)0.764 (5)0.071 (13)*
C10.5450 (3)0.5882 (3)0.7189 (3)0.0410 (7)
H1A0.53030.67020.72820.049*
H1B0.45250.55350.69920.049*
C20.7218 (4)0.6084 (3)0.8905 (3)0.0479 (8)
H2A0.79450.60570.82140.072*
H2B0.75880.57620.97390.072*
H2C0.69400.68660.90590.072*
C30.4831 (3)0.5398 (2)0.9448 (3)0.0464 (8)
H30.39840.51100.89810.056*
H3'0.46540.61570.98140.056*0.50
C40.4443 (7)0.6608 (5)1.0048 (6)0.0403 (13)0.50
H4A0.51140.68021.07600.060*0.50
H4B0.34890.65881.04160.060*0.50
H4C0.44890.71720.93350.060*0.50
C110.6426 (3)0.5669 (2)0.6023 (3)0.0346 (6)
C120.6469 (3)0.6424 (2)0.4950 (3)0.0370 (6)
C130.7364 (3)0.6175 (2)0.3882 (3)0.0386 (7)
C140.8205 (3)0.5226 (2)0.3842 (3)0.0372 (7)
C150.8119 (3)0.4494 (2)0.4901 (3)0.0411 (7)
H150.86760.38320.48960.049*
C160.7241 (3)0.4695 (2)0.5979 (3)0.0371 (6)
C170.5559 (4)0.7462 (3)0.4936 (4)0.0539 (9)
H17A0.60100.80520.54730.081*
H17B0.46360.72840.53140.081*
H17C0.54400.77250.40120.081*
C180.9182 (3)0.4993 (3)0.2693 (3)0.0506 (8)
H18A0.97150.43050.28740.076*
H18B0.98360.56240.25900.076*
H18C0.86320.49000.18670.076*
U11U22U33U12U13U23
Cl10.0693 (6)0.0651 (6)0.0429 (5)0.0039 (4)0.0184 (4)0.0072 (4)
N10.0397 (13)0.0333 (12)0.0421 (14)−0.0020 (9)0.0198 (11)0.0028 (10)
O10.0586 (14)0.0358 (11)0.0515 (14)0.0070 (9)0.0185 (11)0.0011 (10)
C10.0323 (15)0.0451 (16)0.0457 (18)0.0006 (12)0.0128 (12)0.0010 (13)
C20.0512 (19)0.0565 (18)0.0361 (17)−0.0031 (15)0.0128 (14)−0.0041 (14)
C30.0454 (18)0.0442 (16)0.0499 (19)0.0062 (13)0.0217 (14)0.0130 (14)
C40.049 (3)0.040 (3)0.032 (3)0.007 (2)0.015 (3)0.008 (2)
C110.0263 (13)0.0379 (14)0.0396 (16)−0.0048 (10)0.0067 (11)−0.0064 (11)
C120.0332 (14)0.0396 (15)0.0383 (16)−0.0025 (11)0.0055 (12)−0.0041 (12)
C130.0372 (15)0.0436 (15)0.0350 (16)−0.0044 (12)0.0060 (12)−0.0047 (12)
C140.0300 (14)0.0469 (16)0.0348 (15)−0.0060 (12)0.0059 (11)−0.0117 (12)
C150.0362 (15)0.0422 (15)0.0448 (17)0.0034 (12)0.0040 (13)−0.0134 (13)
C160.0359 (15)0.0342 (14)0.0413 (16)−0.0045 (11)0.0069 (12)−0.0036 (12)
C170.061 (2)0.0508 (18)0.050 (2)0.0165 (15)0.0152 (16)0.0071 (15)
C180.0440 (17)0.067 (2)0.0415 (18)0.0017 (15)0.0125 (14)−0.0143 (15)
Cl1—C131.758 (3)C4—H4B0.9800
N1—C11.464 (4)C4—H4C0.9800
N1—C21.468 (4)C11—C161.396 (4)
N1—C31.483 (4)C11—C121.399 (4)
O1—C161.358 (4)C12—C131.400 (4)
O1—H10.82 (5)C12—C171.508 (4)
C1—C111.514 (4)C13—C141.385 (4)
C1—H1A0.9900C14—C151.373 (4)
C1—H1B0.9900C14—C181.506 (4)
C2—H2A0.9800C15—C161.386 (4)
C2—H2B0.9800C15—H150.9500
C2—H2C0.9800C17—H17A0.9800
C3—C3i1.486 (6)C17—H17B0.9800
C3—C41.604 (6)C17—H17C0.9800
C3—H30.9886C18—H18A0.9800
C3—H3'0.9905C18—H18B0.9800
C4—H3'0.6186C18—H18C0.9800
C4—H4A0.9800
C1—N1—C2110.1 (2)C16—C11—C12119.5 (3)
C1—N1—C3109.4 (2)C16—C11—C1120.4 (3)
C2—N1—C3113.9 (2)C12—C11—C1120.1 (2)
C16—O1—H1108 (3)C11—C12—C13117.9 (3)
N1—C1—C11113.1 (2)C11—C12—C17121.0 (3)
N1—C1—H1A108.9C13—C12—C17121.1 (3)
C11—C1—H1A108.9C14—C13—C12123.3 (3)
N1—C1—H1B108.9C14—C13—Cl1117.9 (2)
C11—C1—H1B108.9C12—C13—Cl1118.8 (2)
H1A—C1—H1B107.8C15—C14—C13117.3 (3)
N1—C2—H2A109.5C15—C14—C18120.7 (3)
N1—C2—H2B109.5C13—C14—C18122.1 (3)
H2A—C2—H2B109.5C14—C15—C16121.9 (3)
N1—C2—H2C109.5C14—C15—H15119.1
H2A—C2—H2C109.5C16—C15—H15119.1
H2B—C2—H2C109.5O1—C16—C15117.9 (3)
N1—C3—C3i110.8 (3)O1—C16—C11121.9 (3)
N1—C3—C4113.2 (3)C15—C16—C11120.3 (3)
C3i—C3—C4110.2 (4)C12—C17—H17A109.5
N1—C3—H3107.5C12—C17—H17B109.5
C3i—C3—H3107.5H17A—C17—H17B109.5
C4—C3—H3107.4C12—C17—H17C109.5
N1—C3—H3'110.3H17A—C17—H17C109.5
C3i—C3—H3'110.1H17B—C17—H17C109.5
H3—C3—H3'110.5C14—C18—H18A109.5
C3—C4—H4A109.5C14—C18—H18B109.5
C3—C4—H4B109.5H18A—C18—H18B109.5
H4A—C4—H4B109.5C14—C18—H18C109.5
C3—C4—H4C109.5H18A—C18—H18C109.5
H4A—C4—H4C109.5H18B—C18—H18C109.5
H4B—C4—H4C109.5
C2—N1—C1—C1169.4 (3)C11—C12—C13—Cl1179.3 (2)
C3—N1—C1—C11−164.7 (2)C17—C12—C13—Cl10.3 (4)
C1—N1—C3—C3i159.9 (3)C12—C13—C14—C151.2 (4)
C2—N1—C3—C3i−76.3 (4)Cl1—C13—C14—C15−178.2 (2)
C1—N1—C3—C4−75.7 (4)C12—C13—C14—C18−178.6 (3)
C2—N1—C3—C448.0 (4)Cl1—C13—C14—C182.0 (4)
N1—C1—C11—C1633.1 (4)C13—C14—C15—C16−0.7 (4)
N1—C1—C11—C12−149.8 (3)C18—C14—C15—C16179.1 (3)
N1—C3—C3i—N1i−180.0 (2)C14—C15—C16—O1178.9 (3)
C16—C11—C12—C13−1.4 (4)C14—C15—C16—C11−0.9 (4)
C1—C11—C12—C13−178.5 (3)C12—C11—C16—O1−177.8 (3)
C16—C11—C12—C17177.5 (3)C1—C11—C16—O1−0.7 (4)
C1—C11—C12—C170.4 (4)C12—C11—C16—C152.0 (4)
C11—C12—C13—C14−0.2 (4)C1—C11—C16—C15179.1 (3)
C17—C12—C13—C14−179.1 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.82 (5)1.87 (5)2.614 (3)150 (4)
C1—H1B···Cg1ii0.992.833.709 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C11–C16 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.82 (5)1.87 (5)2.614 (3)150 (4)
C1—H1BCg1i 0.992.833.709 (3)148

Symmetry code: (i) .

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