Literature DB >> 23125745

Hexamethyl 13,14-dioxapenta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-1,4,5,6,11,12-hexa-carboxyl-ate.

Alan J Lough1, Kelsey Jack, William Tam.   

Abstract

In the title compound, C(24)H(24)O(14), the stereochemistry at the cyclo-butane ring is cis-anti-cis and the -COOMe groups in the bicyclic rings are syn to each other. The mol-ecule lies on a twofold rotation axis. In the crystal, weak C-H⋯O hydrogen bonds connect mol-ecules into chains along [001], forming R(2) (2)(10) rings.

Entities:  

Year:  2012        PMID: 23125745      PMCID: PMC3470332          DOI: 10.1107/S1600536812039232

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Lough et al. (2012a ▶,b ▶). For the synthetic background, see: Ballantine et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C24H24O14 M = 536.43 Monoclinic, a = 25.1309 (18) Å b = 10.0840 (7) Å c = 9.5922 (7) Å β = 95.430 (2)° V = 2419.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 147 K 0.15 × 0.10 × 0.07 mm

Data collection

Bruker Kappa APEX DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.711, T max = 0.746 11038 measured reflections 2787 independent reflections 2366 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.098 S = 1.04 2787 reflections 175 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812039232/hb6954sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039232/hb6954Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039232/hb6954Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H24O14F(000) = 1120
Mr = 536.43Dx = 1.472 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 6078 reflections
a = 25.1309 (18) Åθ = 3.0–27.5°
b = 10.0840 (7) ŵ = 0.12 mm1
c = 9.5922 (7) ÅT = 147 K
β = 95.430 (2)°Needle, colourless
V = 2419.9 (3) Å30.15 × 0.10 × 0.07 mm
Z = 4
Bruker Kappa APEX DUO CCD diffractometer2787 independent reflections
Radiation source: fine-focus sealed tube2366 reflections with I > 2σ(I)
Bruker Triumph monochromatorRint = 0.028
φ and ω scansθmax = 27.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −32→32
Tmin = 0.711, Tmax = 0.746k = −13→12
11038 measured reflectionsl = −11→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0518P)2 + 1.6228P] where P = (Fo2 + 2Fc2)/3
2787 reflections(Δ/σ)max = 0.001
175 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.92545 (3)0.44122 (8)0.38295 (8)0.01527 (19)
O20.91010 (5)0.09784 (10)0.30367 (10)0.0322 (3)
O30.94389 (4)0.20695 (9)0.49626 (9)0.0237 (2)
O40.80179 (4)0.21560 (10)0.15093 (10)0.0272 (2)
O50.85951 (3)0.23192 (9)−0.01412 (9)0.0206 (2)
O60.84027 (4)0.69996 (9)0.08929 (10)0.0250 (2)
O70.80331 (4)0.50766 (9)0.00853 (10)0.0227 (2)
C10.97293 (4)0.35610 (11)0.20451 (11)0.0133 (2)
H10.97230.31060.11170.016*
C20.92422 (4)0.33021 (12)0.28941 (11)0.0141 (2)
C30.87579 (4)0.36255 (12)0.18620 (11)0.0149 (2)
C40.87513 (5)0.49467 (12)0.17852 (12)0.0157 (2)
C50.92285 (4)0.54296 (12)0.27571 (11)0.0149 (2)
H5A0.92020.63610.31030.018*
C60.97323 (4)0.51140 (11)0.20141 (11)0.0134 (2)
H60.97480.55280.10710.016*
C70.92448 (5)0.19809 (12)0.36304 (12)0.0171 (3)
C80.93932 (6)0.08885 (15)0.58051 (15)0.0322 (3)
H8A0.95900.10180.67260.048*
H8B0.95430.01290.53380.048*
H8C0.90160.07210.59200.048*
C90.84091 (5)0.26211 (12)0.10758 (12)0.0165 (2)
C100.82628 (5)0.14106 (15)−0.10214 (14)0.0263 (3)
H10A0.84000.1345−0.19420.039*
H10B0.78950.1742−0.11340.039*
H10C0.82700.0533−0.05820.039*
C110.83860 (4)0.58061 (13)0.08826 (12)0.0170 (2)
C120.76407 (5)0.58064 (14)−0.08202 (15)0.0266 (3)
H12A0.74290.5185−0.14330.040*
H12B0.78240.6433−0.13920.040*
H12C0.74040.6294−0.02470.040*
U11U22U33U12U13U23
O10.0186 (4)0.0149 (4)0.0123 (4)0.0003 (3)0.0013 (3)−0.0014 (3)
O20.0547 (7)0.0168 (5)0.0246 (5)−0.0047 (4)0.0011 (4)−0.0007 (4)
O30.0295 (5)0.0222 (5)0.0183 (4)−0.0033 (4)−0.0035 (4)0.0069 (4)
O40.0228 (5)0.0311 (6)0.0287 (5)−0.0110 (4)0.0078 (4)−0.0079 (4)
O50.0188 (4)0.0252 (5)0.0177 (4)−0.0039 (3)0.0015 (3)−0.0053 (4)
O60.0227 (5)0.0180 (5)0.0329 (5)0.0026 (3)−0.0045 (4)−0.0004 (4)
O70.0180 (4)0.0207 (5)0.0274 (5)−0.0002 (3)−0.0091 (4)0.0033 (4)
C10.0127 (5)0.0146 (6)0.0120 (5)−0.0002 (4)−0.0012 (4)−0.0003 (4)
C20.0143 (5)0.0150 (6)0.0127 (5)−0.0004 (4)−0.0001 (4)−0.0018 (4)
C30.0116 (5)0.0190 (6)0.0142 (5)−0.0004 (4)0.0009 (4)0.0002 (4)
C40.0121 (5)0.0188 (6)0.0160 (5)0.0002 (4)0.0002 (4)−0.0011 (4)
C50.0154 (5)0.0138 (6)0.0153 (5)0.0013 (4)−0.0004 (4)−0.0001 (4)
C60.0133 (5)0.0138 (6)0.0126 (5)−0.0004 (4)−0.0019 (4)−0.0001 (4)
C70.0166 (6)0.0179 (6)0.0174 (6)0.0007 (4)0.0038 (4)0.0013 (5)
C80.0412 (8)0.0286 (8)0.0263 (7)0.0004 (6)0.0011 (6)0.0140 (6)
C90.0139 (5)0.0180 (6)0.0172 (5)0.0004 (4)−0.0007 (4)0.0001 (5)
C100.0243 (7)0.0316 (8)0.0223 (6)−0.0046 (5)−0.0013 (5)−0.0102 (6)
C110.0125 (5)0.0196 (6)0.0188 (5)0.0009 (4)0.0013 (4)0.0003 (5)
C120.0193 (6)0.0274 (7)0.0306 (7)0.0005 (5)−0.0106 (5)0.0074 (6)
O1—C21.4331 (14)C3—C41.3343 (17)
O1—C51.4500 (14)C3—C91.4960 (16)
O2—C71.1991 (16)C4—C111.4808 (16)
O3—C71.3271 (15)C4—C51.5275 (15)
O3—C81.4499 (16)C5—C61.5435 (16)
O4—C91.1987 (15)C5—H5A1.0000
O5—C91.3331 (15)C6—C6i1.563 (2)
O5—C101.4547 (15)C6—H61.0000
O6—C111.2043 (16)C8—H8A0.9800
O7—C111.3358 (15)C8—H8B0.9800
O7—C121.4514 (14)C8—H8C0.9800
C1—C1i1.545 (2)C10—H10A0.9800
C1—C21.5553 (15)C10—H10B0.9800
C1—C61.5663 (16)C10—H10C0.9800
C1—H11.0000C12—H12A0.9800
C2—C71.5076 (16)C12—H12B0.9800
C2—C31.5295 (15)C12—H12C0.9800
C2—O1—C596.42 (8)C5—C6—H6115.8
C7—O3—C8116.11 (11)C6i—C6—H6115.8
C9—O5—C10114.99 (10)C1—C6—H6115.8
C11—O7—C12116.12 (10)O2—C7—O3125.51 (12)
C1i—C1—C2113.51 (11)O2—C7—C2122.33 (11)
C1i—C1—C690.30 (5)O3—C7—C2112.12 (10)
C2—C1—C6100.56 (9)O3—C8—H8A109.5
C1i—C1—H1116.2O3—C8—H8B109.5
C2—C1—H1116.2H8A—C8—H8B109.5
C6—C1—H1116.2O3—C8—H8C109.5
O1—C2—C7113.46 (9)H8A—C8—H8C109.5
O1—C2—C3101.97 (9)H8B—C8—H8C109.5
C7—C2—C3117.36 (10)O4—C9—O5125.55 (11)
O1—C2—C1103.01 (9)O4—C9—C3123.42 (11)
C7—C2—C1115.14 (9)O5—C9—C3111.03 (10)
C3—C2—C1104.05 (9)O5—C10—H10A109.5
C4—C3—C9130.13 (11)O5—C10—H10B109.5
C4—C3—C2104.70 (10)H10A—C10—H10B109.5
C9—C3—C2125.05 (10)O5—C10—H10C109.5
C3—C4—C11128.35 (11)H10A—C10—H10C109.5
C3—C4—C5106.24 (10)H10B—C10—H10C109.5
C11—C4—C5125.29 (11)O6—C11—O7125.15 (11)
O1—C5—C4100.80 (9)O6—C11—C4124.12 (11)
O1—C5—C6101.41 (9)O7—C11—C4110.72 (11)
C4—C5—C6106.46 (9)O7—C12—H12A109.5
O1—C5—H5A115.4O7—C12—H12B109.5
C4—C5—H5A115.4H12A—C12—H12B109.5
C6—C5—H5A115.4O7—C12—H12C109.5
C5—C6—C6i114.97 (11)H12A—C12—H12C109.5
C5—C6—C1101.06 (9)H12B—C12—H12C109.5
C6i—C6—C189.66 (5)
C5—O1—C2—C7−178.09 (9)O1—C5—C6—C137.92 (10)
C5—O1—C2—C3−50.92 (9)C4—C5—C6—C1−67.09 (10)
C5—O1—C2—C156.76 (9)C1i—C1—C6—C5−117.62 (10)
C1i—C1—C2—O162.75 (8)C2—C1—C6—C5−3.62 (10)
C6—C1—C2—O1−32.23 (10)C1i—C1—C6—C6i−2.22 (12)
C1i—C1—C2—C7−61.30 (10)C2—C1—C6—C6i111.78 (10)
C6—C1—C2—C7−156.28 (9)C8—O3—C7—O2−10.06 (19)
C1i—C1—C2—C3168.84 (6)C8—O3—C7—C2172.22 (11)
C6—C1—C2—C373.86 (10)O1—C2—C7—O2160.49 (12)
O1—C2—C3—C432.45 (11)C3—C2—C7—O241.86 (17)
C7—C2—C3—C4157.06 (10)C1—C2—C7—O2−81.16 (15)
C1—C2—C3—C4−74.43 (11)O1—C2—C7—O3−21.71 (14)
O1—C2—C3—C9−151.28 (10)C3—C2—C7—O3−140.34 (10)
C7—C2—C3—C9−26.67 (16)C1—C2—C7—O396.65 (12)
C1—C2—C3—C9101.85 (12)C10—O5—C9—O44.24 (18)
C9—C3—C4—C110.3 (2)C10—O5—C9—C3−176.27 (10)
C2—C3—C4—C11176.35 (11)C4—C3—C9—O4−94.36 (17)
C9—C3—C4—C5−175.80 (11)C2—C3—C9—O490.36 (16)
C2—C3—C4—C50.21 (12)C4—C3—C9—O586.14 (16)
C2—O1—C5—C450.47 (9)C2—C3—C9—O5−89.15 (13)
C2—O1—C5—C6−58.97 (9)C12—O7—C11—O6−0.57 (18)
C3—C4—C5—O1−32.25 (12)C12—O7—C11—C4178.21 (10)
C11—C4—C5—O1151.47 (11)C3—C4—C11—O6178.87 (13)
C3—C4—C5—C673.20 (12)C5—C4—C11—O6−5.68 (19)
C11—C4—C5—C6−103.08 (12)C3—C4—C11—O70.08 (18)
O1—C5—C6—C6i−56.92 (8)C5—C4—C11—O7175.53 (11)
C4—C5—C6—C6i−161.93 (7)
D—H···AD—HH···AD···AD—H···A
C6—H6···O1ii1.002.383.2105 (13)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6⋯O1i 1.002.383.2105 (13)140

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Isomerization of 7-oxabenzonorbornadienes into naphthols catalyzed by [RuCl(2)(CO)(3)](2).

Authors:  Melissa Ballantine; Michelle L Menard; William Tam
Journal:  J Org Chem       Date:  2009-10-02       Impact factor: 4.354

3.  Tetra-tert-butyl 13,14-dioxapenta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-5,6,11,12-tetra-carboxyl-ate.

Authors:  Alan J Lough; Kelsey Jack; William Tam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-22

4.  Tetra-methyl 1,4-dimethyl-13,14-dioxa-penta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-5,6,11,12-tetra-carboxyl-ate.

Authors:  Alan J Lough; Kelsey Jack; William Tam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-22

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  Tetra-tert-butyl 13,14-dioxapenta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-5,6,11,12-tetra-carboxyl-ate.

Authors:  Alan J Lough; Kelsey Jack; William Tam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-22

2.  Tetra-methyl 1,4-dimethyl-13,14-dioxa-penta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-5,6,11,12-tetra-carboxyl-ate.

Authors:  Alan J Lough; Kelsey Jack; William Tam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-22
  2 in total

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