Literature DB >> 23125744

Tetra-tert-butyl 13,14-dioxapenta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-5,6,11,12-tetra-carboxyl-ate.

Alan J Lough1, Kelsey Jack, William Tam.   

Abstract

The stereochemistry of the title compound, C(32)H(44)O(10), at the cyclo-butane ring is cis-anti-cis. The mol-ecule lies across an inversion center. In the crystal, weak C-H⋯O hydrogen bonds connect mol-ecules into chains along [100], forming R(2) (2)(6) rings.

Entities:  

Year:  2012        PMID: 23125744      PMCID: PMC3470331          DOI: 10.1107/S1600536812039220

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Lough et al. (2012a ▶,b ▶). For the synthetic background, see: Ballantine et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C32H44O10 M = 588.67 Triclinic, a = 5.8376 (10) Å b = 9.4895 (17) Å c = 14.924 (3) Å α = 99.926 (4)° β = 98.545 (4)° γ = 100.462 (4)° V = 786.9 (2) Å3 Z = 1 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.45 × 0.25 × 0.15 mm

Data collection

Bruker Kappa APEX DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.698, T max = 0.746 6490 measured reflections 3559 independent reflections 3024 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.104 S = 1.04 3559 reflections 196 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812039220/hb6953sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039220/hb6953Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812039220/hb6953Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C32H44O10Z = 1
Mr = 588.67F(000) = 316
Triclinic, P1Dx = 1.242 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.8376 (10) ÅCell parameters from 4249 reflections
b = 9.4895 (17) Åθ = 2.2–27.5°
c = 14.924 (3) ŵ = 0.09 mm1
α = 99.926 (4)°T = 150 K
β = 98.545 (4)°Block, colourless
γ = 100.462 (4)°0.45 × 0.25 × 0.15 mm
V = 786.9 (2) Å3
Bruker Kappa APEX DUO CCD diffractometer3559 independent reflections
Radiation source: fine-focus sealed tube3024 reflections with I > 2σ(I)
Bruker Triumph monochromatorRint = 0.015
φ and ω scansθmax = 27.5°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −7→4
Tmin = 0.698, Tmax = 0.746k = −12→12
6490 measured reflectionsl = −19→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0475P)2 + 0.3125P] where P = (Fo2 + 2Fc2)/3
3559 reflections(Δ/σ)max = 0.001
196 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.22773 (14)0.65121 (9)0.02699 (6)0.01803 (19)
O20.35940 (19)0.52069 (10)0.29004 (7)0.0282 (2)
O30.26592 (16)0.74251 (10)0.32725 (6)0.0217 (2)
O40.68115 (18)0.95566 (11)0.29352 (7)0.0298 (2)
O50.80759 (16)0.97519 (9)0.15871 (6)0.0207 (2)
C10.3636 (2)0.67330 (13)0.18207 (8)0.0174 (2)
C20.2523 (2)0.55902 (13)0.09395 (8)0.0165 (2)
H2A0.10290.49100.09730.020*
C30.4520 (2)0.48426 (13)0.06656 (8)0.0154 (2)
H30.53610.44160.11520.018*
C40.6083 (2)0.61021 (12)0.03288 (8)0.0146 (2)
H40.78010.63640.06220.018*
C50.4701 (2)0.73280 (13)0.05005 (8)0.0164 (2)
H5A0.50700.81370.01600.020*
C60.5012 (2)0.78123 (13)0.15483 (8)0.0167 (2)
C70.3337 (2)0.63815 (13)0.27330 (8)0.0180 (2)
C80.2067 (2)0.72280 (14)0.41859 (8)0.0211 (3)
C90.4200 (3)0.69922 (18)0.48118 (10)0.0332 (3)
H9A0.55790.77670.48300.050*
H9B0.45350.60380.45720.050*
H9C0.38650.70200.54380.050*
C100.1460 (3)0.86826 (18)0.45469 (11)0.0375 (4)
H10A0.00470.87940.41430.056*
H10B0.27930.94810.45550.056*
H10C0.11460.87120.51760.056*
C11−0.0074 (3)0.59823 (18)0.40294 (11)0.0347 (3)
H11A−0.12970.61030.35400.052*
H11B−0.07030.59890.46030.052*
H11C0.03920.50490.38440.052*
C120.6722 (2)0.91271 (13)0.21227 (8)0.0169 (2)
C130.9780 (2)1.11711 (14)0.19571 (9)0.0212 (3)
C140.8388 (3)1.23483 (16)0.21650 (13)0.0371 (4)
H14A0.75951.21900.26850.056*
H14B0.71991.23070.16180.056*
H14C0.94691.33110.23270.056*
C151.1022 (3)1.13826 (18)0.11508 (11)0.0380 (4)
H15A0.98561.14200.06150.057*
H15B1.17951.05630.09920.057*
H15C1.22161.23010.13250.057*
C161.1550 (3)1.10905 (18)0.27928 (11)0.0344 (4)
H16A1.07561.10540.33250.052*
H16B1.28461.19570.29370.052*
H16C1.21901.02080.26550.052*
U11U22U33U12U13U23
O10.0147 (4)0.0190 (4)0.0187 (4)0.0016 (3)0.0010 (3)0.0033 (3)
O20.0417 (6)0.0206 (5)0.0259 (5)0.0099 (4)0.0126 (4)0.0059 (4)
O30.0300 (5)0.0195 (4)0.0184 (4)0.0067 (4)0.0118 (4)0.0039 (3)
O40.0303 (5)0.0322 (6)0.0183 (5)−0.0081 (4)0.0071 (4)−0.0046 (4)
O50.0246 (5)0.0151 (4)0.0186 (4)−0.0039 (3)0.0061 (3)0.0003 (3)
C10.0169 (6)0.0167 (6)0.0176 (6)0.0030 (4)0.0048 (4)0.0004 (4)
C20.0154 (6)0.0167 (6)0.0158 (6)−0.0001 (4)0.0041 (4)0.0018 (4)
C30.0157 (6)0.0141 (5)0.0145 (6)−0.0005 (4)0.0035 (4)0.0009 (4)
C40.0137 (5)0.0144 (6)0.0139 (5)−0.0002 (4)0.0029 (4)0.0009 (4)
C50.0160 (6)0.0155 (6)0.0160 (6)0.0004 (4)0.0025 (4)0.0017 (4)
C60.0169 (6)0.0159 (6)0.0166 (6)0.0036 (4)0.0045 (4)0.0005 (4)
C70.0159 (6)0.0175 (6)0.0181 (6)−0.0006 (4)0.0046 (4)0.0000 (4)
C80.0267 (7)0.0247 (7)0.0144 (6)0.0071 (5)0.0088 (5)0.0045 (5)
C90.0363 (8)0.0394 (8)0.0230 (7)0.0129 (6)0.0008 (6)0.0028 (6)
C100.0595 (11)0.0365 (9)0.0257 (8)0.0253 (8)0.0185 (7)0.0062 (6)
C110.0293 (8)0.0438 (9)0.0320 (8)0.0004 (6)0.0146 (6)0.0107 (7)
C120.0168 (6)0.0155 (6)0.0179 (6)0.0024 (4)0.0043 (4)0.0022 (4)
C130.0200 (6)0.0161 (6)0.0227 (6)−0.0052 (5)0.0013 (5)0.0031 (5)
C140.0375 (9)0.0171 (7)0.0513 (10)0.0022 (6)0.0024 (7)0.0016 (6)
C150.0415 (9)0.0357 (8)0.0305 (8)−0.0128 (7)0.0109 (6)0.0080 (6)
C160.0213 (7)0.0430 (9)0.0339 (8)−0.0044 (6)−0.0031 (6)0.0137 (7)
O1—C51.4442 (14)C8—C101.5164 (19)
O1—C21.4453 (14)C8—C91.5171 (19)
O2—C71.2135 (16)C9—H9A0.9800
O3—C71.3220 (15)C9—H9B0.9800
O3—C81.4892 (15)C9—H9C0.9800
O4—C121.2010 (16)C10—H10A0.9800
O5—C121.3402 (15)C10—H10B0.9800
O5—C131.4840 (14)C10—H10C0.9800
C1—C61.3421 (17)C11—H11A0.9800
C1—C71.4839 (17)C11—H11B0.9800
C1—C21.5253 (16)C11—H11C0.9800
C2—C31.5401 (16)C13—C141.513 (2)
C2—H2A1.0000C13—C151.518 (2)
C3—C4i1.5498 (16)C13—C161.5190 (18)
C3—C41.5686 (16)C14—H14A0.9800
C3—H31.0000C14—H14B0.9800
C4—C51.5392 (16)C14—H14C0.9800
C4—C3i1.5498 (16)C15—H15A0.9800
C4—H41.0000C15—H15B0.9800
C5—C61.5255 (16)C15—H15C0.9800
C5—H5A1.0000C16—H16A0.9800
C6—C121.4876 (16)C16—H16B0.9800
C8—C111.515 (2)C16—H16C0.9800
C5—O1—C296.18 (8)H9A—C9—H9B109.5
C7—O3—C8120.96 (10)C8—C9—H9C109.5
C12—O5—C13121.03 (10)H9A—C9—H9C109.5
C6—C1—C7134.31 (11)H9B—C9—H9C109.5
C6—C1—C2105.44 (10)C8—C10—H10A109.5
C7—C1—C2119.46 (10)C8—C10—H10B109.5
O1—C2—C1101.00 (9)H10A—C10—H10B109.5
O1—C2—C3102.44 (9)C8—C10—H10C109.5
C1—C2—C3105.96 (9)H10A—C10—H10C109.5
O1—C2—H2A115.2H10B—C10—H10C109.5
C1—C2—H2A115.2C8—C11—H11A109.5
C3—C2—H2A115.2C8—C11—H11B109.5
C2—C3—C4i113.90 (9)H11A—C11—H11B109.5
C2—C3—C4100.76 (9)C8—C11—H11C109.5
C4i—C3—C490.45 (9)H11A—C11—H11C109.5
C2—C3—H3116.0H11B—C11—H11C109.5
C4i—C3—H3116.0O4—C12—O5126.38 (11)
C4—C3—H3116.0O4—C12—C6124.31 (11)
C5—C4—C3i115.39 (9)O5—C12—C6109.30 (10)
C5—C4—C3101.01 (9)O5—C13—C14108.34 (11)
C3i—C4—C389.55 (9)O5—C13—C15102.62 (10)
C5—C4—H4115.7C14—C13—C15110.74 (13)
C3i—C4—H4115.7O5—C13—C16111.42 (11)
C3—C4—H4115.7C14—C13—C16112.83 (13)
O1—C5—C6101.33 (9)C15—C13—C16110.40 (12)
O1—C5—C4101.79 (9)C13—C14—H14A109.5
C6—C5—C4106.44 (9)C13—C14—H14B109.5
O1—C5—H5A115.2H14A—C14—H14B109.5
C6—C5—H5A115.2C13—C14—H14C109.5
C4—C5—H5A115.2H14A—C14—H14C109.5
C1—C6—C12129.04 (11)H14B—C14—H14C109.5
C1—C6—C5105.29 (10)C13—C15—H15A109.5
C12—C6—C5125.30 (11)C13—C15—H15B109.5
O2—C7—O3126.77 (12)H15A—C15—H15B109.5
O2—C7—C1120.41 (11)C13—C15—H15C109.5
O3—C7—C1112.71 (10)H15A—C15—H15C109.5
O3—C8—C11108.87 (10)H15B—C15—H15C109.5
O3—C8—C10101.91 (10)C13—C16—H16A109.5
C11—C8—C10111.03 (12)C13—C16—H16B109.5
O3—C8—C9110.50 (11)H16A—C16—H16B109.5
C11—C8—C9112.93 (12)C13—C16—H16C109.5
C10—C8—C9111.03 (12)H16A—C16—H16C109.5
C8—C9—H9A109.5H16B—C16—H16C109.5
C8—C9—H9B109.5
C5—O1—C2—C151.53 (10)C2—C1—C6—C50.72 (12)
C5—O1—C2—C3−57.73 (10)O1—C5—C6—C132.18 (12)
C6—C1—C2—O1−33.35 (12)C4—C5—C6—C1−73.86 (12)
C7—C1—C2—O1155.41 (10)O1—C5—C6—C12−154.29 (11)
C6—C1—C2—C373.14 (12)C4—C5—C6—C1299.66 (13)
C7—C1—C2—C3−98.11 (12)C8—O3—C7—O2−1.27 (19)
O1—C2—C3—C4i−61.22 (11)C8—O3—C7—C1174.85 (10)
C1—C2—C3—C4i−166.66 (9)C6—C1—C7—O2−123.53 (16)
O1—C2—C3—C434.11 (10)C2—C1—C7—O244.64 (17)
C1—C2—C3—C4−71.33 (11)C6—C1—C7—O360.08 (18)
C2—C3—C4—C51.36 (10)C2—C1—C7—O3−131.75 (11)
C4i—C3—C4—C5115.81 (10)C7—O3—C8—C11−63.78 (15)
C2—C3—C4—C3i−114.45 (10)C7—O3—C8—C10178.84 (12)
C4i—C3—C4—C3i0.0C7—O3—C8—C960.78 (15)
C2—O1—C5—C6−51.21 (10)C13—O5—C12—O4−4.86 (19)
C2—O1—C5—C458.47 (10)C13—O5—C12—C6173.80 (10)
C3i—C4—C5—O158.36 (12)C1—C6—C12—O4−14.3 (2)
C3—C4—C5—O1−36.43 (10)C5—C6—C12—O4173.77 (12)
C3i—C4—C5—C6164.08 (10)C1—C6—C12—O5167.03 (12)
C3—C4—C5—C669.28 (11)C5—C6—C12—O5−4.92 (16)
C7—C1—C6—C12−3.2 (2)C12—O5—C13—C14−67.15 (15)
C2—C1—C6—C12−172.48 (11)C12—O5—C13—C15175.69 (12)
C7—C1—C6—C5170.05 (13)C12—O5—C13—C1657.55 (16)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O1ii1.002.473.2118 (16)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2A⋯O1i 1.002.473.2118 (16)130

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Isomerization of 7-oxabenzonorbornadienes into naphthols catalyzed by [RuCl(2)(CO)(3)](2).

Authors:  Melissa Ballantine; Michelle L Menard; William Tam
Journal:  J Org Chem       Date:  2009-10-02       Impact factor: 4.354

3.  Hexamethyl 13,14-dioxapenta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-1,4,5,6,11,12-hexa-carboxyl-ate.

Authors:  Alan J Lough; Kelsey Jack; William Tam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-22

4.  Tetra-methyl 1,4-dimethyl-13,14-dioxa-penta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-5,6,11,12-tetra-carboxyl-ate.

Authors:  Alan J Lough; Kelsey Jack; William Tam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-22

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  Hexamethyl 13,14-dioxapenta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-1,4,5,6,11,12-hexa-carboxyl-ate.

Authors:  Alan J Lough; Kelsey Jack; William Tam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-22

2.  Tetra-methyl 1,4-dimethyl-13,14-dioxa-penta-cyclo-[8.2.1.1(4,7).0(2,9).0(3,8)]tetra-deca-5,11-diene-5,6,11,12-tetra-carboxyl-ate.

Authors:  Alan J Lough; Kelsey Jack; William Tam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-22
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.