| Literature DB >> 23125724 |
Kaliyaperumal Thanigaimani1, Ibrahim Abdul Razak, Suhana Arshad, Rathinavel Jagatheesan, Kulandaisamy Joseph Santhanaraj.
Abstract
The asymmetric unit of the title compound, 2C(10)H(11)N(5)O·C(6)H(10)O(4), consists of a 2,4-diamino-6-(4-meth-oxy-phen-yl)-1,3,5-triazine mol-ecule and one-half mol-ecule of adipic acid which lies about an inversion center. The triazine ring makes a dihedral angle of 12.89 (4)° with the adjacent benzene ring. In the crystal, the components are linked by N-H⋯O and O-H⋯N hydrogen bonds, thus generating a centrosymmetric 2 + 1 unit of triazine and adipic acid mol-ecules with R(2) (2)(8) motifs. The triazine mol-ecules are connected to each other by N-H⋯N hydrogen bonds, forming an R(2) (2)(8) motif and a supra-molecular ribbon along the c axis. The 2 + 1 units and the supra-molecular ribbons are further inter-linked by weak N-H⋯O, C-H⋯O and C-H⋯π inter-actions, resulting in a three-dimensional network.Entities:
Year: 2012 PMID: 23125724 PMCID: PMC3470311 DOI: 10.1107/S1600536812038743
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C10H11N5O·C6H10O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yc | Cell parameters from 7141 reflections |
| θ = 2.8–32.4° | |
| µ = 0.10 mm−1 | |
| β = 96.912 (1)° | Block, colourless |
| 0.64 × 0.40 × 0.22 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 4993 independent reflections |
| Radiation source: fine-focus sealed tube | 4263 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 32.6°, θmin = 2.8° |
| Absorption correction: multi-scan ( | |
| 13850 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4993 reflections | (Δ/σ)max = 0.001 |
| 211 parameters | Δρmax = 0.49 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.38325 (5) | 0.96141 (10) | 0.63437 (6) | 0.02222 (15) | |
| O2 | 0.39639 (4) | 0.93287 (9) | 0.45203 (5) | 0.01924 (14) | |
| O3 | 0.06629 (4) | 1.28973 (9) | 0.50394 (6) | 0.01951 (14) | |
| N1 | 0.24094 (4) | 0.53425 (10) | 0.66667 (5) | 0.01295 (13) | |
| N2 | 0.30198 (5) | 0.29976 (11) | 0.77505 (6) | 0.01611 (14) | |
| N3 | 0.30677 (4) | 0.28034 (10) | 0.58551 (5) | 0.01296 (13) | |
| N4 | 0.30393 (5) | 0.26981 (11) | 0.39410 (6) | 0.01582 (14) | |
| N5 | 0.24267 (4) | 0.51829 (10) | 0.46927 (5) | 0.01320 (13) | |
| C2 | 0.28291 (5) | 0.37227 (11) | 0.67348 (6) | 0.01221 (14) | |
| C4 | 0.28388 (5) | 0.35704 (11) | 0.48465 (6) | 0.01227 (14) | |
| C6 | 0.22262 (4) | 0.59896 (11) | 0.56262 (6) | 0.01197 (14) | |
| C7 | 0.17790 (5) | 0.77580 (12) | 0.54733 (6) | 0.01294 (15) | |
| C8 | 0.16892 (5) | 0.89239 (12) | 0.63761 (7) | 0.01547 (15) | |
| H8A | 0.1896 | 0.8550 | 0.7114 | 0.019* | |
| C9 | 0.13032 (5) | 1.06136 (12) | 0.62062 (7) | 0.01631 (16) | |
| H9A | 0.1246 | 1.1387 | 0.6827 | 0.020* | |
| C10 | 0.09974 (5) | 1.11861 (12) | 0.51240 (7) | 0.01452 (15) | |
| C11 | 0.10537 (5) | 1.00202 (13) | 0.42193 (7) | 0.01636 (16) | |
| H11A | 0.0828 | 1.0379 | 0.3485 | 0.020* | |
| C12 | 0.14445 (5) | 0.83235 (12) | 0.44012 (7) | 0.01592 (15) | |
| H12A | 0.1485 | 0.7534 | 0.3783 | 0.019* | |
| C13 | 0.04003 (6) | 1.35766 (14) | 0.39371 (8) | 0.02142 (18) | |
| H13A | 0.0194 | 1.4833 | 0.3986 | 0.032* | |
| H13B | −0.0052 | 1.2802 | 0.3572 | 0.032* | |
| H13C | 0.0878 | 1.3560 | 0.3499 | 0.032* | |
| C14 | 0.40924 (5) | 0.87581 (12) | 0.54826 (7) | 0.01502 (15) | |
| C15 | 0.45564 (5) | 0.70071 (12) | 0.58066 (7) | 0.01631 (16) | |
| H15A | 0.4198 | 0.6232 | 0.6230 | 0.020* | |
| H15B | 0.5074 | 0.7305 | 0.6311 | 0.020* | |
| C16 | 0.47996 (5) | 0.59149 (12) | 0.48172 (7) | 0.01603 (15) | |
| H16A | 0.5201 | 0.6637 | 0.4430 | 0.019* | |
| H16B | 0.4291 | 0.5694 | 0.4279 | 0.019* | |
| H1N2 | 0.2826 (9) | 0.353 (2) | 0.8337 (12) | 0.030 (4)* | |
| H2N2 | 0.3333 (10) | 0.203 (2) | 0.7873 (13) | 0.036 (4)* | |
| H1N4 | 0.3319 (9) | 0.163 (2) | 0.4039 (12) | 0.027 (3)* | |
| H2N4 | 0.2840 (9) | 0.316 (2) | 0.3262 (13) | 0.035 (4)* | |
| H1O1 | 0.3554 (11) | 1.070 (2) | 0.6062 (14) | 0.041 (4)* |
| O1 | 0.0314 (3) | 0.0187 (3) | 0.0169 (3) | 0.0107 (3) | 0.0047 (2) | 0.0004 (2) |
| O2 | 0.0258 (3) | 0.0157 (3) | 0.0157 (3) | 0.0051 (2) | 0.0006 (2) | −0.0016 (2) |
| O3 | 0.0257 (3) | 0.0149 (3) | 0.0178 (3) | 0.0063 (2) | 0.0016 (2) | 0.0010 (2) |
| N1 | 0.0156 (3) | 0.0133 (3) | 0.0100 (3) | 0.0017 (2) | 0.0017 (2) | 0.0006 (2) |
| N2 | 0.0233 (3) | 0.0151 (3) | 0.0097 (3) | 0.0037 (3) | 0.0011 (2) | 0.0014 (2) |
| N3 | 0.0158 (3) | 0.0130 (3) | 0.0102 (3) | 0.0015 (2) | 0.0019 (2) | 0.0001 (2) |
| N4 | 0.0223 (3) | 0.0147 (3) | 0.0106 (3) | 0.0037 (3) | 0.0026 (2) | −0.0006 (2) |
| N5 | 0.0155 (3) | 0.0137 (3) | 0.0105 (3) | 0.0024 (2) | 0.0022 (2) | −0.0002 (2) |
| C2 | 0.0131 (3) | 0.0128 (3) | 0.0106 (3) | −0.0002 (2) | 0.0008 (2) | 0.0005 (2) |
| C4 | 0.0130 (3) | 0.0128 (3) | 0.0111 (3) | −0.0005 (2) | 0.0016 (2) | −0.0003 (2) |
| C6 | 0.0122 (3) | 0.0135 (3) | 0.0102 (3) | 0.0006 (2) | 0.0014 (2) | 0.0001 (2) |
| C7 | 0.0132 (3) | 0.0143 (4) | 0.0115 (3) | 0.0019 (3) | 0.0023 (2) | 0.0002 (3) |
| C8 | 0.0170 (3) | 0.0172 (4) | 0.0121 (3) | 0.0024 (3) | 0.0010 (2) | −0.0003 (3) |
| C9 | 0.0193 (3) | 0.0158 (4) | 0.0139 (3) | 0.0025 (3) | 0.0021 (3) | −0.0019 (3) |
| C10 | 0.0142 (3) | 0.0138 (4) | 0.0156 (3) | 0.0016 (3) | 0.0020 (2) | 0.0005 (3) |
| C11 | 0.0187 (3) | 0.0169 (4) | 0.0132 (3) | 0.0038 (3) | 0.0010 (3) | 0.0010 (3) |
| C12 | 0.0190 (3) | 0.0168 (4) | 0.0119 (3) | 0.0040 (3) | 0.0016 (2) | −0.0002 (3) |
| C13 | 0.0247 (4) | 0.0187 (4) | 0.0202 (4) | 0.0055 (3) | 0.0001 (3) | 0.0037 (3) |
| C14 | 0.0149 (3) | 0.0127 (4) | 0.0173 (3) | 0.0007 (3) | 0.0012 (2) | −0.0017 (3) |
| C15 | 0.0177 (3) | 0.0132 (4) | 0.0179 (3) | 0.0033 (3) | 0.0017 (3) | 0.0004 (3) |
| C16 | 0.0164 (3) | 0.0130 (4) | 0.0185 (3) | 0.0032 (3) | 0.0011 (3) | −0.0003 (3) |
| O1—C14 | 1.3199 (10) | C7—C8 | 1.4018 (11) |
| O1—H1O1 | 0.952 (17) | C8—C9 | 1.3851 (12) |
| O2—C14 | 1.2249 (10) | C8—H8A | 0.9500 |
| O3—C10 | 1.3595 (10) | C9—C10 | 1.3991 (11) |
| O3—C13 | 1.4314 (11) | C9—H9A | 0.9500 |
| N1—C6 | 1.3377 (10) | C10—C11 | 1.3942 (12) |
| N1—C2 | 1.3587 (10) | C11—C12 | 1.3944 (12) |
| N2—C2 | 1.3337 (10) | C11—H11A | 0.9500 |
| N2—H1N2 | 0.894 (15) | C12—H12A | 0.9500 |
| N2—H2N2 | 0.868 (16) | C13—H13A | 0.9800 |
| N3—C4 | 1.3472 (10) | C13—H13B | 0.9800 |
| N3—C2 | 1.3473 (10) | C13—H13C | 0.9800 |
| N4—C4 | 1.3347 (10) | C14—C15 | 1.5072 (12) |
| N4—H1N4 | 0.903 (15) | C15—C16 | 1.5226 (12) |
| N4—H2N4 | 0.906 (16) | C15—H15A | 0.9900 |
| N5—C6 | 1.3415 (10) | C15—H15B | 0.9900 |
| N5—C4 | 1.3524 (11) | C16—C16i | 1.5251 (17) |
| C6—C7 | 1.4783 (11) | C16—H16A | 0.9900 |
| C7—C12 | 1.3985 (11) | C16—H16B | 0.9900 |
| C14—O1—H1O1 | 107.1 (10) | O3—C10—C9 | 115.80 (7) |
| C10—O3—C13 | 117.23 (7) | C11—C10—C9 | 119.73 (8) |
| C6—N1—C2 | 114.56 (7) | C10—C11—C12 | 119.41 (7) |
| C2—N2—H1N2 | 119.2 (10) | C10—C11—H11A | 120.3 |
| C2—N2—H2N2 | 122.8 (10) | C12—C11—H11A | 120.3 |
| H1N2—N2—H2N2 | 118.0 (14) | C11—C12—C7 | 121.49 (7) |
| C4—N3—C2 | 115.37 (7) | C11—C12—H12A | 119.3 |
| C4—N4—H1N4 | 118.1 (9) | C7—C12—H12A | 119.3 |
| C4—N4—H2N4 | 117.7 (10) | O3—C13—H13A | 109.5 |
| H1N4—N4—H2N4 | 123.8 (14) | O3—C13—H13B | 109.5 |
| C6—N5—C4 | 115.48 (7) | H13A—C13—H13B | 109.5 |
| N2—C2—N3 | 117.83 (7) | O3—C13—H13C | 109.5 |
| N2—C2—N1 | 117.29 (7) | H13A—C13—H13C | 109.5 |
| N3—C2—N1 | 124.88 (7) | H13B—C13—H13C | 109.5 |
| N4—C4—N3 | 118.09 (7) | O2—C14—O1 | 123.24 (8) |
| N4—C4—N5 | 117.76 (7) | O2—C14—C15 | 123.73 (7) |
| N3—C4—N5 | 124.15 (7) | O1—C14—C15 | 113.04 (7) |
| N1—C6—N5 | 125.52 (7) | C14—C15—C16 | 114.03 (7) |
| N1—C6—C7 | 118.30 (7) | C14—C15—H15A | 108.7 |
| N5—C6—C7 | 116.17 (7) | C16—C15—H15A | 108.7 |
| C12—C7—C8 | 118.16 (8) | C14—C15—H15B | 108.7 |
| C12—C7—C6 | 119.94 (7) | C16—C15—H15B | 108.7 |
| C8—C7—C6 | 121.89 (7) | H15A—C15—H15B | 107.6 |
| C9—C8—C7 | 120.88 (7) | C15—C16—C16i | 111.86 (9) |
| C9—C8—H8A | 119.6 | C15—C16—H16A | 109.2 |
| C7—C8—H8A | 119.6 | C16i—C16—H16A | 109.2 |
| C8—C9—C10 | 120.26 (7) | C15—C16—H16B | 109.2 |
| C8—C9—H9A | 119.9 | C16i—C16—H16B | 109.2 |
| C10—C9—H9A | 119.9 | H16A—C16—H16B | 107.9 |
| O3—C10—C11 | 124.46 (7) | ||
| C4—N3—C2—N2 | 178.22 (7) | C12—C7—C8—C9 | −1.99 (12) |
| C4—N3—C2—N1 | −1.99 (11) | C6—C7—C8—C9 | 176.85 (7) |
| C6—N1—C2—N2 | −179.18 (7) | C7—C8—C9—C10 | −0.16 (12) |
| C6—N1—C2—N3 | 1.04 (11) | C13—O3—C10—C11 | −4.03 (12) |
| C2—N3—C4—N4 | −178.37 (7) | C13—O3—C10—C9 | 175.58 (7) |
| C2—N3—C4—N5 | 2.48 (11) | C8—C9—C10—O3 | −177.20 (7) |
| C6—N5—C4—N4 | 178.87 (7) | C8—C9—C10—C11 | 2.43 (12) |
| C6—N5—C4—N3 | −1.97 (11) | O3—C10—C11—C12 | 177.11 (8) |
| C2—N1—C6—N5 | −0.45 (12) | C9—C10—C11—C12 | −2.49 (12) |
| C2—N1—C6—C7 | −179.26 (7) | C10—C11—C12—C7 | 0.30 (12) |
| C4—N5—C6—N1 | 0.90 (12) | C8—C7—C12—C11 | 1.92 (12) |
| C4—N5—C6—C7 | 179.73 (7) | C6—C7—C12—C11 | −176.95 (7) |
| N1—C6—C7—C12 | −168.63 (7) | O2—C14—C15—C16 | −4.38 (12) |
| N5—C6—C7—C12 | 12.46 (11) | O1—C14—C15—C16 | 175.24 (7) |
| N1—C6—C7—C8 | 12.56 (11) | C14—C15—C16—C16i | −175.20 (8) |
| N5—C6—C7—C8 | −166.36 (7) |
| H··· | ||||
| N2—H1 | 0.894 (15) | 2.051 (15) | 2.9438 (10) | 177.7 (14) |
| N2—H2 | 0.868 (16) | 2.336 (16) | 2.9891 (10) | 132.2 (13) |
| N4—H1 | 0.901 (15) | 2.021 (15) | 2.9142 (11) | 170.9 (13) |
| N4—H2 | 0.906 (16) | 2.245 (16) | 3.1456 (10) | 172.5 (14) |
| O1—H1 | 0.953 (15) | 1.728 (15) | 2.6655 (10) | 167.5 (15) |
| C13—H13 | 0.98 | 2.53 | 3.3997 (12) | 148 |
| C15—H15 | 0.99 | 2.83 | 3.598 | 135 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the N1/C2/N3/C4/N5/C6 triazine ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H1 | 0.894 (15) | 2.051 (15) | 2.9438 (10) | 177.7 (14) |
| N2—H2 | 0.868 (16) | 2.336 (16) | 2.9891 (10) | 132.2 (13) |
| N4—H1 | 0.901 (15) | 2.021 (15) | 2.9142 (11) | 170.9 (13) |
| N4—H2 | 0.906 (16) | 2.245 (16) | 3.1456 (10) | 172.5 (14) |
| O1—H1 | 0.953 (15) | 1.728 (15) | 2.6655 (10) | 167.5 (15) |
| C13—H13 | 0.98 | 2.53 | 3.3997 (12) | 148 |
| C15—H15 | 0.99 | 2.83 | 3.598 | 135 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .