Literature DB >> 23125724

Adipic acid-2,4-diamino-6-(4-meth-oxy-phen-yl)-1,3,5-triazine (1/2).

Kaliyaperumal Thanigaimani1, Ibrahim Abdul Razak, Suhana Arshad, Rathinavel Jagatheesan, Kulandaisamy Joseph Santhanaraj.   

Abstract

The asymmetric unit of the title compound, 2C(10)H(11)N(5)O·C(6)H(10)O(4), consists of a 2,4-diamino-6-(4-meth-oxy-phen-yl)-1,3,5-triazine mol-ecule and one-half mol-ecule of adipic acid which lies about an inversion center. The triazine ring makes a dihedral angle of 12.89 (4)° with the adjacent benzene ring. In the crystal, the components are linked by N-H⋯O and O-H⋯N hydrogen bonds, thus generating a centrosymmetric 2 + 1 unit of triazine and adipic acid mol-ecules with R(2) (2)(8) motifs. The triazine mol-ecules are connected to each other by N-H⋯N hydrogen bonds, forming an R(2) (2)(8) motif and a supra-molecular ribbon along the c axis. The 2 + 1 units and the supra-molecular ribbons are further inter-linked by weak N-H⋯O, C-H⋯O and C-H⋯π inter-actions, resulting in a three-dimensional network.

Entities:  

Year:  2012        PMID: 23125724      PMCID: PMC3470311          DOI: 10.1107/S1600536812038743

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of triazine derivatives, see: Bork et al. (2003 ▶). For bond-length data, see: Allen et al. (1987) ▶. For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

2C10H11N5O·C6H10O4 M = 580.62 Monoclinic, a = 15.9952 (9) Å b = 7.3104 (5) Å c = 12.0351 (7) Å β = 96.912 (1)° V = 1397.05 (15) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.64 × 0.40 × 0.22 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.938, T max = 0.979 13850 measured reflections 4993 independent reflections 4263 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.126 S = 1.08 4993 reflections 211 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.49 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812038743/is5192sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812038743/is5192Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812038743/is5192Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C10H11N5O·C6H10O4F(000) = 612
Mr = 580.62Dx = 1.380 Mg m3
Monoclinic, P2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ycCell parameters from 7141 reflections
a = 15.9952 (9) Åθ = 2.8–32.4°
b = 7.3104 (5) ŵ = 0.10 mm1
c = 12.0351 (7) ÅT = 100 K
β = 96.912 (1)°Block, colourless
V = 1397.05 (15) Å30.64 × 0.40 × 0.22 mm
Z = 2
Bruker SMART APEXII DUO CCD area-detector diffractometer4993 independent reflections
Radiation source: fine-focus sealed tube4263 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
φ and ω scansθmax = 32.6°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −24→24
Tmin = 0.938, Tmax = 0.979k = −10→11
13850 measured reflectionsl = −18→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0737P)2 + 0.2639P] where P = (Fo2 + 2Fc2)/3
4993 reflections(Δ/σ)max = 0.001
211 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.22 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.38325 (5)0.96141 (10)0.63437 (6)0.02222 (15)
O20.39639 (4)0.93287 (9)0.45203 (5)0.01924 (14)
O30.06629 (4)1.28973 (9)0.50394 (6)0.01951 (14)
N10.24094 (4)0.53425 (10)0.66667 (5)0.01295 (13)
N20.30198 (5)0.29976 (11)0.77505 (6)0.01611 (14)
N30.30677 (4)0.28034 (10)0.58551 (5)0.01296 (13)
N40.30393 (5)0.26981 (11)0.39410 (6)0.01582 (14)
N50.24267 (4)0.51829 (10)0.46927 (5)0.01320 (13)
C20.28291 (5)0.37227 (11)0.67348 (6)0.01221 (14)
C40.28388 (5)0.35704 (11)0.48465 (6)0.01227 (14)
C60.22262 (4)0.59896 (11)0.56262 (6)0.01197 (14)
C70.17790 (5)0.77580 (12)0.54733 (6)0.01294 (15)
C80.16892 (5)0.89239 (12)0.63761 (7)0.01547 (15)
H8A0.18960.85500.71140.019*
C90.13032 (5)1.06136 (12)0.62062 (7)0.01631 (16)
H9A0.12461.13870.68270.020*
C100.09974 (5)1.11861 (12)0.51240 (7)0.01452 (15)
C110.10537 (5)1.00202 (13)0.42193 (7)0.01636 (16)
H11A0.08281.03790.34850.020*
C120.14445 (5)0.83235 (12)0.44012 (7)0.01592 (15)
H12A0.14850.75340.37830.019*
C130.04003 (6)1.35766 (14)0.39371 (8)0.02142 (18)
H13A0.01941.48330.39860.032*
H13B−0.00521.28020.35720.032*
H13C0.08781.35600.34990.032*
C140.40924 (5)0.87581 (12)0.54826 (7)0.01502 (15)
C150.45564 (5)0.70071 (12)0.58066 (7)0.01631 (16)
H15A0.41980.62320.62300.020*
H15B0.50740.73050.63110.020*
C160.47996 (5)0.59149 (12)0.48172 (7)0.01603 (15)
H16A0.52010.66370.44300.019*
H16B0.42910.56940.42790.019*
H1N20.2826 (9)0.353 (2)0.8337 (12)0.030 (4)*
H2N20.3333 (10)0.203 (2)0.7873 (13)0.036 (4)*
H1N40.3319 (9)0.163 (2)0.4039 (12)0.027 (3)*
H2N40.2840 (9)0.316 (2)0.3262 (13)0.035 (4)*
H1O10.3554 (11)1.070 (2)0.6062 (14)0.041 (4)*
U11U22U33U12U13U23
O10.0314 (3)0.0187 (3)0.0169 (3)0.0107 (3)0.0047 (2)0.0004 (2)
O20.0258 (3)0.0157 (3)0.0157 (3)0.0051 (2)0.0006 (2)−0.0016 (2)
O30.0257 (3)0.0149 (3)0.0178 (3)0.0063 (2)0.0016 (2)0.0010 (2)
N10.0156 (3)0.0133 (3)0.0100 (3)0.0017 (2)0.0017 (2)0.0006 (2)
N20.0233 (3)0.0151 (3)0.0097 (3)0.0037 (3)0.0011 (2)0.0014 (2)
N30.0158 (3)0.0130 (3)0.0102 (3)0.0015 (2)0.0019 (2)0.0001 (2)
N40.0223 (3)0.0147 (3)0.0106 (3)0.0037 (3)0.0026 (2)−0.0006 (2)
N50.0155 (3)0.0137 (3)0.0105 (3)0.0024 (2)0.0022 (2)−0.0002 (2)
C20.0131 (3)0.0128 (3)0.0106 (3)−0.0002 (2)0.0008 (2)0.0005 (2)
C40.0130 (3)0.0128 (3)0.0111 (3)−0.0005 (2)0.0016 (2)−0.0003 (2)
C60.0122 (3)0.0135 (3)0.0102 (3)0.0006 (2)0.0014 (2)0.0001 (2)
C70.0132 (3)0.0143 (4)0.0115 (3)0.0019 (3)0.0023 (2)0.0002 (3)
C80.0170 (3)0.0172 (4)0.0121 (3)0.0024 (3)0.0010 (2)−0.0003 (3)
C90.0193 (3)0.0158 (4)0.0139 (3)0.0025 (3)0.0021 (3)−0.0019 (3)
C100.0142 (3)0.0138 (4)0.0156 (3)0.0016 (3)0.0020 (2)0.0005 (3)
C110.0187 (3)0.0169 (4)0.0132 (3)0.0038 (3)0.0010 (3)0.0010 (3)
C120.0190 (3)0.0168 (4)0.0119 (3)0.0040 (3)0.0016 (2)−0.0002 (3)
C130.0247 (4)0.0187 (4)0.0202 (4)0.0055 (3)0.0001 (3)0.0037 (3)
C140.0149 (3)0.0127 (4)0.0173 (3)0.0007 (3)0.0012 (2)−0.0017 (3)
C150.0177 (3)0.0132 (4)0.0179 (3)0.0033 (3)0.0017 (3)0.0004 (3)
C160.0164 (3)0.0130 (4)0.0185 (3)0.0032 (3)0.0011 (3)−0.0003 (3)
O1—C141.3199 (10)C7—C81.4018 (11)
O1—H1O10.952 (17)C8—C91.3851 (12)
O2—C141.2249 (10)C8—H8A0.9500
O3—C101.3595 (10)C9—C101.3991 (11)
O3—C131.4314 (11)C9—H9A0.9500
N1—C61.3377 (10)C10—C111.3942 (12)
N1—C21.3587 (10)C11—C121.3944 (12)
N2—C21.3337 (10)C11—H11A0.9500
N2—H1N20.894 (15)C12—H12A0.9500
N2—H2N20.868 (16)C13—H13A0.9800
N3—C41.3472 (10)C13—H13B0.9800
N3—C21.3473 (10)C13—H13C0.9800
N4—C41.3347 (10)C14—C151.5072 (12)
N4—H1N40.903 (15)C15—C161.5226 (12)
N4—H2N40.906 (16)C15—H15A0.9900
N5—C61.3415 (10)C15—H15B0.9900
N5—C41.3524 (11)C16—C16i1.5251 (17)
C6—C71.4783 (11)C16—H16A0.9900
C7—C121.3985 (11)C16—H16B0.9900
C14—O1—H1O1107.1 (10)O3—C10—C9115.80 (7)
C10—O3—C13117.23 (7)C11—C10—C9119.73 (8)
C6—N1—C2114.56 (7)C10—C11—C12119.41 (7)
C2—N2—H1N2119.2 (10)C10—C11—H11A120.3
C2—N2—H2N2122.8 (10)C12—C11—H11A120.3
H1N2—N2—H2N2118.0 (14)C11—C12—C7121.49 (7)
C4—N3—C2115.37 (7)C11—C12—H12A119.3
C4—N4—H1N4118.1 (9)C7—C12—H12A119.3
C4—N4—H2N4117.7 (10)O3—C13—H13A109.5
H1N4—N4—H2N4123.8 (14)O3—C13—H13B109.5
C6—N5—C4115.48 (7)H13A—C13—H13B109.5
N2—C2—N3117.83 (7)O3—C13—H13C109.5
N2—C2—N1117.29 (7)H13A—C13—H13C109.5
N3—C2—N1124.88 (7)H13B—C13—H13C109.5
N4—C4—N3118.09 (7)O2—C14—O1123.24 (8)
N4—C4—N5117.76 (7)O2—C14—C15123.73 (7)
N3—C4—N5124.15 (7)O1—C14—C15113.04 (7)
N1—C6—N5125.52 (7)C14—C15—C16114.03 (7)
N1—C6—C7118.30 (7)C14—C15—H15A108.7
N5—C6—C7116.17 (7)C16—C15—H15A108.7
C12—C7—C8118.16 (8)C14—C15—H15B108.7
C12—C7—C6119.94 (7)C16—C15—H15B108.7
C8—C7—C6121.89 (7)H15A—C15—H15B107.6
C9—C8—C7120.88 (7)C15—C16—C16i111.86 (9)
C9—C8—H8A119.6C15—C16—H16A109.2
C7—C8—H8A119.6C16i—C16—H16A109.2
C8—C9—C10120.26 (7)C15—C16—H16B109.2
C8—C9—H9A119.9C16i—C16—H16B109.2
C10—C9—H9A119.9H16A—C16—H16B107.9
O3—C10—C11124.46 (7)
C4—N3—C2—N2178.22 (7)C12—C7—C8—C9−1.99 (12)
C4—N3—C2—N1−1.99 (11)C6—C7—C8—C9176.85 (7)
C6—N1—C2—N2−179.18 (7)C7—C8—C9—C10−0.16 (12)
C6—N1—C2—N31.04 (11)C13—O3—C10—C11−4.03 (12)
C2—N3—C4—N4−178.37 (7)C13—O3—C10—C9175.58 (7)
C2—N3—C4—N52.48 (11)C8—C9—C10—O3−177.20 (7)
C6—N5—C4—N4178.87 (7)C8—C9—C10—C112.43 (12)
C6—N5—C4—N3−1.97 (11)O3—C10—C11—C12177.11 (8)
C2—N1—C6—N5−0.45 (12)C9—C10—C11—C12−2.49 (12)
C2—N1—C6—C7−179.26 (7)C10—C11—C12—C70.30 (12)
C4—N5—C6—N10.90 (12)C8—C7—C12—C111.92 (12)
C4—N5—C6—C7179.73 (7)C6—C7—C12—C11−176.95 (7)
N1—C6—C7—C12−168.63 (7)O2—C14—C15—C16−4.38 (12)
N5—C6—C7—C1212.46 (11)O1—C14—C15—C16175.24 (7)
N1—C6—C7—C812.56 (11)C14—C15—C16—C16i−175.20 (8)
N5—C6—C7—C8−166.36 (7)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···N5ii0.894 (15)2.051 (15)2.9438 (10)177.7 (14)
N2—H2N2···O2ii0.868 (16)2.336 (16)2.9891 (10)132.2 (13)
N4—H1N4···O2iii0.901 (15)2.021 (15)2.9142 (11)170.9 (13)
N4—H2N4···N1iv0.906 (16)2.245 (16)3.1456 (10)172.5 (14)
O1—H1O1···N3v0.953 (15)1.728 (15)2.6655 (10)167.5 (15)
C13—H13A···O3vi0.982.533.3997 (12)148
C15—H15A···Cg10.992.833.598135
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1/C2/N3/C4/N5/C6 triazine ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯N5i 0.894 (15)2.051 (15)2.9438 (10)177.7 (14)
N2—H2N2⋯O2i 0.868 (16)2.336 (16)2.9891 (10)132.2 (13)
N4—H1N4⋯O2ii 0.901 (15)2.021 (15)2.9142 (11)170.9 (13)
N4—H2N4⋯N1iii 0.906 (16)2.245 (16)3.1456 (10)172.5 (14)
O1—H1O1⋯N3iv 0.953 (15)1.728 (15)2.6655 (10)167.5 (15)
C13—H13A⋯O3v 0.982.533.3997 (12)148
C15—H15ACg10.992.833.598135

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  Novel orthogonal strategy toward solid-phase synthesis of 1,3,5-substituted triazines.

Authors:  Jacqueline T Bork; Jae Wook Lee; Sonya M Khersonsky; Ho-Sang Moon; Young-Tae Chang
Journal:  Org Lett       Date:  2003-01-23       Impact factor: 6.005

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

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1.  6-(4-Methyl-phen-yl)-1,3,5-triazine-2,4-di-amine-benzoic acid (1/1).

Authors:  Kaliyaperumal Thanigaimani; Nuridayanti Che Khalib; Ibrahim Abdul Razak; Palanisamy Lavanya; Kasthuri Balasubramani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-25

2.  Supra-molecular architecture in a co-crystal of the N(7)-H tautomeric form of N (6)-benzoyl-adenine with adipic acid (1/0.5).

Authors:  Robert Swinton Darious; Packianathan Thomas Muthiah; Franc Perdih
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-05-13

3.  Crystal structure of a new mol-ecular salt: 4-amino-benzenaminium 5-carb-oxy-penta-noate.

Authors:  Risha Mishra; Krishnan Rangan; Raghavaiah Pallepogu
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-01-26
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