Literature DB >> 23125721

Diphenyl (methyl-amido)-phosphate.

Fahimeh Sabbaghi1, Mehrdad Pourayoubi, Marek Nečas, Peter Bartoš.   

Abstract

The N-H bond in the title compound, C(13)H(14)NO(3)P, is syn-oriented relative to the P=O bond. The N atom deviates somewhat from planarity, the sum of the bond angles being 353.3°. The P atom has a distorted tetra-hedral coordination; its bond angles are in the range 93.96 (5)-116.83 (6)°. In the crystal, mol-ecules form centrosymmetric dimers through P=O⋯H-N hydrogen bonds.

Entities:  

Year:  2012        PMID: 23125721      PMCID: PMC3470308          DOI: 10.1107/S160053681203869X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Pourayoubi et al. (2012 ▶). For bond lengths and angles in a related structure, see: Sabbaghi et al. (2011 ▶).

Experimental

Crystal data

C13H14NO3P M = 263.22 Monoclinic, a = 9.7652 (5) Å b = 13.6368 (6) Å c = 10.3537 (5) Å β = 114.217 (6)° V = 1257.43 (12) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 120 K 0.50 × 0.50 × 0.40 mm

Data collection

Oxford Diffraction Xcalibur (Sapphire2) diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.939, T max = 1.000 14649 measured reflections 2212 independent reflections 1871 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.079 S = 1.09 2212 reflections 168 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681203869X/ld2070sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681203869X/ld2070Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14NO3PF(000) = 552
Mr = 263.22Dx = 1.390 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.7652 (5) ÅCell parameters from 7682 reflections
b = 13.6368 (6) Åθ = 2.8–27.1°
c = 10.3537 (5) ŵ = 0.22 mm1
β = 114.217 (6)°T = 120 K
V = 1257.43 (12) Å3Block, white
Z = 40.50 × 0.50 × 0.40 mm
Oxford Diffraction Xcalibur (Sapphire2) diffractometer2212 independent reflections
Radiation source: Enhance (Mo) X-ray Source1871 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
Detector resolution: 8.4353 pixels mm-1θmax = 25.0°, θmin = 2.8°
ω scanh = −11→11
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −12→16
Tmin = 0.939, Tmax = 1.000l = −12→12
14649 measured reflections
Refinement on F2Primary atom site location: heavy-atom method
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.046P)2 + 0.1667P] where P = (Fo2 + 2Fc2)/3
2212 reflections(Δ/σ)max = 0.001
168 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.51390 (4)0.43348 (3)0.30989 (4)0.01769 (14)
O10.38345 (11)0.43725 (7)0.34520 (10)0.0208 (3)
O20.50768 (12)0.50885 (7)0.18982 (10)0.0223 (3)
O30.52841 (11)0.34002 (7)0.22495 (10)0.0211 (3)
N10.67107 (14)0.44375 (9)0.44729 (14)0.0207 (3)
H1N0.662 (2)0.4674 (13)0.513 (2)0.032 (5)*
C10.81454 (17)0.45739 (12)0.43646 (17)0.0273 (4)
H1A0.89610.43250.52250.041*
H1B0.83030.52730.42560.041*
H1C0.81330.42140.35400.041*
C20.47748 (15)0.60922 (11)0.19327 (15)0.0188 (3)
C30.51171 (16)0.66074 (11)0.31815 (15)0.0226 (3)
H30.55520.62850.40720.027*
C40.48104 (17)0.76048 (12)0.31004 (17)0.0257 (4)
H40.50300.79670.39460.031*
C50.41887 (17)0.80803 (12)0.18051 (17)0.0267 (4)
H50.39900.87640.17620.032*
C60.38592 (17)0.75473 (12)0.05730 (17)0.0269 (4)
H60.34340.7869−0.03180.032*
C70.41444 (16)0.65494 (11)0.06295 (15)0.0228 (3)
H70.39100.6185−0.02170.027*
C80.54261 (16)0.24509 (11)0.28322 (14)0.0195 (3)
C90.68401 (17)0.20402 (12)0.34803 (16)0.0249 (4)
H90.77070.24060.35830.030*
C100.69714 (18)0.10862 (12)0.39770 (16)0.0272 (4)
H100.79360.07950.44310.033*
C110.57023 (18)0.05567 (12)0.38137 (16)0.0264 (4)
H110.5797−0.00990.41490.032*
C120.42946 (17)0.09791 (12)0.31628 (16)0.0276 (4)
H120.34270.06130.30560.033*
C130.41468 (17)0.19365 (12)0.26646 (16)0.0248 (4)
H130.31840.22310.22170.030*
U11U22U33U12U13U23
P10.0214 (2)0.0152 (2)0.0177 (2)0.00056 (15)0.00922 (16)−0.00031 (15)
O10.0221 (5)0.0185 (6)0.0227 (5)−0.0005 (4)0.0100 (4)−0.0020 (4)
O20.0332 (6)0.0155 (6)0.0210 (5)0.0015 (4)0.0141 (5)0.0010 (4)
O30.0301 (6)0.0149 (6)0.0202 (5)0.0020 (4)0.0122 (4)−0.0002 (4)
N10.0217 (7)0.0224 (8)0.0202 (7)0.0009 (5)0.0109 (6)−0.0024 (6)
C10.0225 (8)0.0297 (10)0.0317 (9)−0.0026 (7)0.0130 (7)−0.0037 (7)
C20.0188 (7)0.0150 (8)0.0248 (8)−0.0001 (6)0.0112 (6)0.0010 (6)
C30.0255 (8)0.0215 (9)0.0203 (8)−0.0002 (6)0.0089 (6)0.0012 (6)
C40.0296 (8)0.0205 (9)0.0288 (8)−0.0019 (7)0.0138 (7)−0.0039 (7)
C50.0276 (8)0.0169 (9)0.0375 (9)0.0032 (6)0.0155 (7)0.0031 (7)
C60.0260 (8)0.0256 (9)0.0275 (8)0.0041 (7)0.0095 (7)0.0088 (7)
C70.0238 (8)0.0244 (9)0.0202 (8)0.0000 (6)0.0089 (6)0.0004 (6)
C80.0278 (8)0.0143 (8)0.0184 (7)0.0001 (6)0.0116 (6)−0.0021 (6)
C90.0241 (8)0.0215 (9)0.0306 (8)−0.0022 (6)0.0127 (7)0.0000 (7)
C100.0273 (9)0.0221 (9)0.0318 (9)0.0053 (7)0.0117 (7)0.0036 (7)
C110.0380 (9)0.0184 (9)0.0254 (8)−0.0003 (7)0.0156 (7)0.0006 (7)
C120.0293 (9)0.0259 (10)0.0294 (9)−0.0079 (7)0.0138 (7)−0.0029 (7)
C130.0220 (8)0.0253 (10)0.0255 (8)0.0002 (7)0.0083 (6)−0.0019 (7)
P1—O11.4632 (10)C5—C61.387 (2)
P1—O31.5875 (10)C5—H50.9500
P1—O21.5949 (10)C6—C71.385 (2)
P1—N11.6148 (13)C6—H60.9500
O2—C21.4037 (18)C7—H70.9500
O3—C81.4108 (17)C8—C131.380 (2)
N1—C11.4625 (18)C8—C91.382 (2)
N1—H1N0.788 (18)C9—C101.385 (2)
C1—H1A0.9800C9—H90.9500
C1—H1B0.9800C10—C111.383 (2)
C1—H1C0.9800C10—H100.9500
C2—C71.381 (2)C11—C121.384 (2)
C2—C31.387 (2)C11—H110.9500
C3—C41.388 (2)C12—C131.389 (2)
C3—H30.9500C12—H120.9500
C4—C51.386 (2)C13—H130.9500
C4—H40.9500
O1—P1—O3116.83 (6)C4—C5—H5120.4
O1—P1—O2114.42 (6)C6—C5—H5120.4
O3—P1—O293.96 (5)C7—C6—C5120.62 (14)
O1—P1—N1112.78 (6)C7—C6—H6119.7
O3—P1—N1106.80 (6)C5—C6—H6119.7
O2—P1—N1110.45 (6)C2—C7—C6119.08 (14)
C2—O2—P1123.35 (9)C2—C7—H7120.5
C8—O3—P1121.01 (9)C6—C7—H7120.5
C1—N1—P1122.53 (10)C13—C8—C9121.84 (14)
C1—N1—H1N117.4 (13)C13—C8—O3119.17 (13)
P1—N1—H1N113.4 (14)C9—C8—O3118.87 (13)
N1—C1—H1A109.5C8—C9—C10118.86 (14)
N1—C1—H1B109.5C8—C9—H9120.6
H1A—C1—H1B109.5C10—C9—H9120.6
N1—C1—H1C109.5C11—C10—C9120.19 (15)
H1A—C1—H1C109.5C11—C10—H10119.9
H1B—C1—H1C109.5C9—C10—H10119.9
C7—C2—C3121.52 (14)C10—C11—C12120.21 (15)
C7—C2—O2115.43 (13)C10—C11—H11119.9
C3—C2—O2123.03 (13)C12—C11—H11119.9
C2—C3—C4118.46 (14)C11—C12—C13120.20 (15)
C2—C3—H3120.8C11—C12—H12119.9
C4—C3—H3120.8C13—C12—H12119.9
C5—C4—C3121.02 (15)C8—C13—C12118.69 (14)
C5—C4—H4119.5C8—C13—H13120.7
C3—C4—H4119.5C12—C13—H13120.7
C4—C5—C6119.30 (15)
O1—P1—O2—C250.74 (12)C4—C5—C6—C70.1 (2)
O3—P1—O2—C2172.62 (10)C3—C2—C7—C60.5 (2)
N1—P1—O2—C2−77.81 (11)O2—C2—C7—C6−177.80 (12)
O1—P1—O3—C8−61.57 (11)C5—C6—C7—C2−0.6 (2)
O2—P1—O3—C8178.47 (10)P1—O3—C8—C1385.76 (15)
N1—P1—O3—C865.73 (11)P1—O3—C8—C9−98.12 (14)
O1—P1—N1—C1−170.21 (11)C13—C8—C9—C10−0.2 (2)
O3—P1—N1—C160.14 (13)O3—C8—C9—C10−176.17 (13)
O2—P1—N1—C1−40.78 (14)C8—C9—C10—C110.5 (2)
P1—O2—C2—C7−153.60 (11)C9—C10—C11—C12−0.5 (2)
P1—O2—C2—C328.15 (18)C10—C11—C12—C130.2 (2)
C7—C2—C3—C40.1 (2)C9—C8—C13—C12−0.1 (2)
O2—C2—C3—C4178.21 (13)O3—C8—C13—C12175.92 (13)
C2—C3—C4—C5−0.6 (2)C11—C12—C13—C80.0 (2)
C3—C4—C5—C60.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.788 (18)2.141 (18)2.9106 (17)165.1 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O1i 0.788 (18)2.141 (18)2.9106 (17)165.1 (18)

Symmetry code: (i) .

  3 in total

1.  The double H-atom acceptability of the P=O group in new XP(O)(NHCH2C6H4-2-Cl)2 phosphoramidates [X = C6H5O- and CF3C(O)NH-]: a database analysis of compounds having a P(O)(NHR) group.

Authors:  Mehrdad Pourayoubi; Marek Nečas; Monireh Negari
Journal:  Acta Crystallogr C       Date:  2012-01-06       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Diphenyl [(S)-1-phenylpropanamido]-phosphate.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Monireh Negari; Marek Nečas
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
  3 in total

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