Literature DB >> 22064755

Diphenyl [(S)-1-phenylpropanamido]-phosphate.

Fahimeh Sabbaghi, Mehrdad Pourayoubi, Monireh Negari, Marek Nečas.   

Abstract

The title compound, <n class="Chemical">spanclass="Chemical">pan> class="Chemical">C(n>21)H(22<spn>an class="Chemical">)NO(3)P, was synthesized from the reaction of <span class="Chemical">(C(6)H(5)O)(2)P(O)(Cl) and S-1-phenyl-propyl-amine (1:2 mole ratio) at 273 K, followed by removal of the S-1-phenyl-propyl-amine hydro-chloride by-product by dissolving in H(2)O. The P atom is located in a distorted tetra-hedral environment. The bond angles at the P atom vary from 99.51 (12) to 116.68 (12)°. The sp(2) character of the N atom is reflected by the C-N-P angle [120.9 (2)°]. The P=O group and the N-H unit adopt an anti orientation with respect to one another. In the crystal, adjacent mol-ecules are linked via N-H⋯O(P) hydrogen bonds into a one-dimensional arrangement running parallel to the a axis.

Entities:  

Year:  2011        PMID: 22064755      PMCID: PMC3200690          DOI: 10.1107/S1600536811034507

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature on phon class="Chemical">spho­ramidates having a <class="Chemical">pan> class="Chemical">span class="Chemical">C(=O)NHP(=O) skeleton, and the <spn>an class="Chemical">hydrogen-bond patterns and strengths, see: Toghraee et al. (2011 ▶); Pourayoubi et al. (2011 ▶). For a related phospho­ramidate with a P(=O)(O)2(N) skeleton, and its bond lengths and angles, see: Pourayoubi et al. (2010 ▶).

Experimental

Crystal data

<n class="Chemical">span class="Chemical">C21H22NO3Ppan>> M = 367.37 Orthorhombic, a = 5.4853 (3) Å b = 8.1450 (11) Å c = 41.162 (4) Å V = 1839.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 120 K 0.40 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire2 (large Be window) detector Absorption correction: multi-scan (CrysAlis <n class="Chemical">span class="Disease">REDn>; Oxford Diffraction, 2009 ▶) T min = 0.981, T max = 1.000 4914 measu<n class="Chemical">span class="Disease">redpan>> reflections 3000 independent reflections 2404 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.089 S = 1.07 3000 reflections 239 parameters 1 restraint <n class="Chemical">span class="Disease">H atomspan>> treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.42 e Å−3 Absolute structure: Flack (1983 ▶), 1052 Friedel pairs Flack parameter: −0.09 (14) Data collection: CrysAlis <n class="Chemical">spanclass="Chemical">pan> class="Disease">CCDn> (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis <spn>an class="Disease">RED (Oxford Diffraction, 2009 ▶); data <span class="Disease">reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536811034507/dn2713sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034507/dn2713Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H22NO3PF(000) = 776
Mr = 367.37Dx = 1.327 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1550 reflections
a = 5.4853 (3) Åθ = 3.2–27.6°
b = 8.1450 (11) ŵ = 0.17 mm1
c = 41.162 (4) ÅT = 120 K
V = 1839.0 (3) Å3Plate, colorless
Z = 40.40 × 0.20 × 0.20 mm
Oxford Diffraction Xcalibur diffractometer with a Sapphire2 (large Be window) detector3000 independent reflections
Radiation source: Enhance (Mo) X-ray Source2404 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 8.4353 pixels mm-1θmax = 25.0°, θmin = 3.2°
ω scanh = −5→6
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −9→5
Tmin = 0.981, Tmax = 1.000l = −48→48
4914 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.089w = 1/[σ2(Fo2) + (0.0325P)2 + 0.0316P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3000 reflectionsΔρmax = 0.41 e Å3
239 parametersΔρmin = −0.42 e Å3
1 restraintAbsolute structure: Flack (1983), 1052 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.09 (14)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P11.02848 (15)0.21930 (11)0.13952 (2)0.0144 (2)
O11.0319 (4)0.2594 (3)0.10191 (4)0.0190 (6)
O20.9231 (4)0.3876 (2)0.15288 (5)0.0159 (5)
O31.2652 (4)0.1671 (2)0.15233 (5)0.0168 (6)
N10.8109 (5)0.0886 (3)0.14460 (7)0.0122 (6)
H10.664 (2)0.118 (3)0.1438 (7)0.018*
C11.2275 (6)0.3148 (4)0.08300 (8)0.0138 (8)
C21.4066 (6)0.4158 (4)0.09534 (8)0.0175 (8)
H2A1.40620.44770.11750.021*
C31.5882 (6)0.4694 (4)0.07423 (8)0.0193 (9)
H3B1.71510.53780.08220.023*
C41.5863 (7)0.4244 (4)0.04181 (9)0.0237 (9)
H4A1.70920.46350.02750.028*
C51.4054 (6)0.3227 (4)0.03045 (8)0.0239 (9)
H5A1.40440.29090.00820.029*
C61.2250 (6)0.2665 (4)0.05106 (7)0.0186 (8)
H6A1.10100.19540.04320.022*
C70.8931 (6)0.4166 (4)0.18657 (8)0.0147 (8)
C81.0704 (7)0.5046 (4)0.20239 (8)0.0232 (9)
H8A1.21410.53780.19130.028*
C91.0358 (7)0.5446 (4)0.23511 (8)0.0270 (9)
H9A1.15750.60450.24650.032*
C100.8268 (7)0.4975 (4)0.25076 (9)0.0277 (10)
H10A0.80300.52500.27300.033*
C110.6510 (7)0.4101 (4)0.23415 (8)0.0220 (9)
H11A0.50620.37770.24510.026*
C120.6827 (6)0.3689 (4)0.20180 (8)0.0170 (8)
H12A0.56110.30900.19040.020*
C130.6168 (7)−0.1630 (4)0.18811 (7)0.0273 (10)
H13A0.4918−0.23740.19660.041*
H13B0.5715−0.04930.19300.041*
H13C0.7740−0.18820.19830.041*
C140.6370 (6)−0.1851 (4)0.15156 (7)0.0213 (9)
H14A0.4814−0.15150.14130.026*
H14B0.6628−0.30280.14670.026*
C150.8451 (6)−0.0856 (4)0.13654 (7)0.0130 (7)
H15A1.0005−0.12260.14690.016*
C160.8667 (6)−0.1162 (4)0.10011 (8)0.0131 (8)
C171.0577 (6)−0.2086 (4)0.08788 (7)0.0175 (8)
H17A1.1767−0.25120.10240.021*
C181.0790 (6)−0.2405 (4)0.05478 (8)0.0211 (9)
H18A1.2099−0.30550.04680.025*
C190.9076 (6)−0.1766 (4)0.03360 (8)0.0213 (9)
H19A0.9221−0.19650.01090.026*
C200.7162 (7)−0.0845 (4)0.04518 (8)0.0211 (9)
H20A0.5981−0.04130.03060.025*
C210.6966 (6)−0.0549 (4)0.07836 (8)0.0178 (9)
H21A0.56400.00860.08630.021*
U11U22U33U12U13U23
P10.0134 (4)0.0160 (4)0.0139 (5)−0.0003 (4)−0.0006 (4)−0.0004 (4)
O10.0146 (12)0.0300 (15)0.0122 (11)−0.0012 (13)0.0002 (10)0.0020 (10)
O20.0200 (13)0.0115 (12)0.0163 (12)0.0000 (11)−0.0005 (11)−0.0006 (10)
O30.0136 (12)0.0178 (13)0.0191 (13)−0.0002 (11)−0.0008 (10)−0.0001 (11)
N10.0132 (14)0.0114 (15)0.0119 (16)0.0030 (13)−0.0001 (14)−0.0015 (13)
C10.0098 (18)0.013 (2)0.018 (2)0.0016 (16)0.0051 (14)0.0038 (16)
C20.0175 (19)0.0173 (18)0.018 (2)0.0038 (17)0.0013 (16)−0.0023 (16)
C30.0152 (19)0.0126 (19)0.030 (2)−0.0028 (17)−0.0017 (17)0.0017 (17)
C40.020 (2)0.022 (2)0.029 (2)0.0019 (18)0.0120 (18)0.0046 (19)
C50.028 (2)0.031 (2)0.0119 (19)0.0009 (19)0.0064 (16)−0.0006 (17)
C60.0222 (19)0.018 (2)0.0157 (19)−0.0053 (18)−0.0017 (16)0.0002 (16)
C70.0164 (19)0.0115 (18)0.0162 (19)0.0029 (17)−0.0031 (16)−0.0003 (16)
C80.019 (2)0.0183 (19)0.032 (2)−0.0011 (19)0.0001 (19)−0.0022 (17)
C90.027 (2)0.025 (2)0.029 (2)0.000 (2)−0.009 (2)−0.0110 (18)
C100.036 (3)0.030 (2)0.017 (2)0.010 (2)−0.007 (2)−0.0079 (19)
C110.024 (2)0.027 (2)0.015 (2)0.003 (2)0.0002 (17)0.0016 (18)
C120.0167 (19)0.016 (2)0.019 (2)−0.0012 (17)−0.0067 (16)−0.0012 (16)
C130.037 (2)0.025 (2)0.020 (2)−0.0053 (19)0.0051 (18)0.0021 (18)
C140.028 (2)0.0157 (19)0.020 (2)−0.0020 (17)−0.0016 (16)−0.0034 (17)
C150.0115 (16)0.0149 (18)0.0128 (18)0.0017 (15)−0.0032 (16)0.0010 (17)
C160.0141 (18)0.0083 (18)0.017 (2)−0.0031 (16)−0.0005 (15)−0.0012 (15)
C170.0180 (18)0.0196 (18)0.0148 (18)−0.0021 (19)−0.0024 (15)−0.0027 (17)
C180.019 (2)0.019 (2)0.025 (2)−0.0018 (18)0.0042 (16)−0.0069 (17)
C190.033 (2)0.021 (2)0.0102 (18)−0.0100 (18)0.0022 (16)−0.0018 (16)
C200.029 (2)0.020 (2)0.014 (2)−0.0004 (19)−0.0041 (18)0.0012 (17)
C210.021 (2)0.016 (2)0.016 (2)0.0027 (17)−0.0030 (17)−0.0042 (16)
P1—O31.465 (2)C10—C111.380 (5)
P1—O11.582 (2)C10—H10A0.9500
P1—O21.586 (2)C11—C121.384 (4)
P1—N11.613 (3)C11—H11A0.9500
O1—C11.400 (3)C12—H12A0.9500
O2—C71.417 (4)C13—C141.519 (4)
N1—C151.469 (4)C13—H13A0.9800
N1—H10.838 (10)C13—H13B0.9800
C1—C61.372 (4)C13—H13C0.9800
C1—C21.378 (4)C14—C151.530 (4)
C2—C31.392 (4)C14—H14A0.9900
C2—H2A0.9500C14—H14B0.9900
C3—C41.384 (4)C15—C161.525 (4)
C3—H3B0.9500C15—H15A1.0000
C4—C51.374 (4)C16—C171.385 (4)
C4—H4A0.9500C16—C211.386 (4)
C5—C61.382 (4)C17—C181.392 (4)
C5—H5A0.9500C17—H17A0.9500
C6—H6A0.9500C18—C191.384 (4)
C7—C121.370 (4)C18—H18A0.9500
C7—C81.373 (4)C19—C201.376 (5)
C8—C91.398 (4)C19—H19A0.9500
C8—H8A0.9500C20—C211.391 (4)
C9—C101.370 (5)C20—H20A0.9500
C9—H9A0.9500C21—H21A0.9500
O3—P1—O1113.67 (13)C10—C11—H11A119.5
O3—P1—O2116.68 (12)C12—C11—H11A119.5
O1—P1—O299.51 (12)C7—C12—C11118.5 (3)
O3—P1—N1114.72 (13)C7—C12—H12A120.7
O1—P1—N1105.78 (13)C11—C12—H12A120.7
O2—P1—N1104.81 (13)C14—C13—H13A109.5
C1—O1—P1128.3 (2)C14—C13—H13B109.5
C7—O2—P1121.73 (19)H13A—C13—H13B109.5
C15—N1—P1120.9 (2)C14—C13—H13C109.5
C15—N1—H1113 (2)H13A—C13—H13C109.5
P1—N1—H1121 (2)H13B—C13—H13C109.5
C6—C1—C2122.1 (3)C13—C14—C15113.1 (3)
C6—C1—O1115.6 (3)C13—C14—H14A109.0
C2—C1—O1122.3 (3)C15—C14—H14A109.0
C1—C2—C3117.9 (3)C13—C14—H14B109.0
C1—C2—H2A121.1C15—C14—H14B109.0
C3—C2—H2A121.1H14A—C14—H14B107.8
C4—C3—C2120.9 (3)N1—C15—C16113.0 (3)
C4—C3—H3B119.6N1—C15—C14109.0 (3)
C2—C3—H3B119.6C16—C15—C14111.6 (3)
C5—C4—C3119.6 (3)N1—C15—H15A107.7
C5—C4—H4A120.2C16—C15—H15A107.7
C3—C4—H4A120.2C14—C15—H15A107.7
C4—C5—C6120.5 (3)C17—C16—C21118.0 (3)
C4—C5—H5A119.7C17—C16—C15120.3 (3)
C6—C5—H5A119.7C21—C16—C15121.6 (3)
C1—C6—C5119.1 (3)C16—C17—C18121.4 (3)
C1—C6—H6A120.5C16—C17—H17A119.3
C5—C6—H6A120.5C18—C17—H17A119.3
C12—C7—C8121.9 (3)C19—C18—C17119.3 (3)
C12—C7—O2119.9 (3)C19—C18—H18A120.3
C8—C7—O2118.0 (3)C17—C18—H18A120.3
C7—C8—C9118.8 (4)C20—C19—C18120.4 (3)
C7—C8—H8A120.6C20—C19—H19A119.8
C9—C8—H8A120.6C18—C19—H19A119.8
C10—C9—C8120.1 (4)C19—C20—C21119.6 (3)
C10—C9—H9A120.0C19—C20—H20A120.2
C8—C9—H9A120.0C21—C20—H20A120.2
C9—C10—C11119.7 (3)C16—C21—C20121.3 (3)
C9—C10—H10A120.1C16—C21—H21A119.3
C11—C10—H10A120.1C20—C21—H21A119.3
C10—C11—C12120.9 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.84 (1)2.25 (1)3.077 (3)167 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.84 (1)2.25 (1)3.077 (3)167 (3)

Symmetry code: (i) .

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