Literature DB >> 23125683

4-[(2E)-2-(2-Hy-droxy-benzyl-idene)hydrazin-1-yl]benzonitrile.

Shaaban K Mohamed1, Goran A Bogdanović, Antar A Abdelhamid, Sladjana B Novaković, Herman Potgeiter.   

Abstract

The asymmetric unit of the title Schiff base, C(14)n class="Species">H(11)N(3)O, contains two independent mol-ecules which have similar conformations. The dihedral angles between the benzene rings are 4.19 (9) and 14.18 (9)° in the two mol-ecules. An intra-molecular O-H⋯N hydrogen bond stabilizes the mol-ecular conformation of each mol-ecules. The crystal packing is dominated by pairs of equivalent N-H⋯N and C-H⋯O hydrogen bonds which arrange the mol-ecules into layers parallel to (-111).

Entities:  

Year:  2012        PMID: 23125683      PMCID: PMC3470239          DOI: 10.1107/S1600536812037841

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For azomethines, see: Archibald et al. (1994 ▶); Harada et al. (1999 ▶); Ogawa et al. (1998 ▶). For the biological properties of Schiff bases, see: Lozier et al. (1975 ▶); Dao et al. (2000 ▶). For their coordination chemistry, see: Kargar et al. (2009 ▶); Yeap et al. (2009 ▶). For the structure of related Schiff bases reported by our group, see: Mohamed, Abdelhamid et al. (2012 ▶); Mohamed, Akkurt et al. (2012 ▶).

Experimental

Crystal data

C14H11N3O M = 237.26 Triclinic, a = 8.1917 (7) Å b = 11.6406 (7) Å c = 13.4445 (8) Å α = 103.006 (5)° β = 104.387 (6)° γ = 96.426 (6)° V = 1190.67 (14) Å3 Z = 4 Cu Kα radiation μ = 0.70 mm−1 T = 293 K 0.26 × 0.15 × 0.14 mm

Data collection

Oxford Diffraction Xcalibur (Sapphire3, Gemini) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.827, T max = 1.000 7913 measured reflections 4592 independent reflections 3696 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.121 S = 1.05 4592 reflections 341 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶)’; software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PLATON (Spek, 2009 ▶) and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812037841/rz2800sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037841/rz2800Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812037841/rz2800Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H11N3OZ = 4
Mr = 237.26F(000) = 496
Triclinic, P1Dx = 1.324 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.5418 Å
a = 8.1917 (7) ÅCell parameters from 3110 reflections
b = 11.6406 (7) Åθ = 3.5–72.5°
c = 13.4445 (8) ŵ = 0.70 mm1
α = 103.006 (5)°T = 293 K
β = 104.387 (6)°Prismatic, colorless
γ = 96.426 (6)°0.26 × 0.15 × 0.14 mm
V = 1190.67 (14) Å3
Oxford Diffraction Xcalibur (Sapphire3, Gemini) diffractometer4592 independent reflections
Radiation source: Enhance (Cu) X-ray Source3696 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 16.3280 pixels mm-1θmax = 72.6°, θmin = 3.5°
ω scansh = −9→10
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −14→13
Tmin = 0.827, Tmax = 1.000l = −16→14
7913 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0591P)2 + 0.1257P] where P = (Fo2 + 2Fc2)/3
4592 reflections(Δ/σ)max < 0.001
341 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.14 e Å3
Experimental. Absorption correction: Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. 'CrysAlisPro (Oxford Diffraction, 2009)'
xyzUiso*/Ueq
O1A0.48536 (17)0.59328 (11)0.66183 (10)0.0784 (4)
O1B0.91964 (17)−0.08146 (11)0.25880 (10)0.0774 (4)
N1A0.22126 (15)0.44483 (11)0.51588 (9)0.0526 (3)
N1B0.93383 (15)0.06285 (11)0.13286 (9)0.0522 (3)
N2A0.09712 (17)0.40478 (12)0.42146 (10)0.0596 (3)
N2B0.87286 (17)0.10497 (12)0.04621 (10)0.0602 (3)
N3A−0.0385 (2)0.69952 (14)0.03913 (11)0.0808 (5)
N3B0.20536 (19)−0.19989 (13)−0.37048 (11)0.0718 (4)
C1A0.22866 (18)0.37735 (12)0.58006 (11)0.0515 (3)
H1A0.15060.30600.55930.062*
C1B1.06978 (18)0.12410 (12)0.20323 (11)0.0497 (3)
H1B1.12420.19240.19170.060*
C2A0.35367 (18)0.40831 (12)0.68322 (11)0.0480 (3)
C2B1.14175 (17)0.09042 (12)0.30040 (11)0.0475 (3)
C3A0.47572 (19)0.51421 (13)0.72128 (12)0.0536 (3)
C3B1.0654 (2)−0.00961 (13)0.32475 (12)0.0549 (3)
C4A0.5895 (2)0.54087 (15)0.82180 (13)0.0662 (4)
H4A0.67070.61090.84640.079*
C4B1.1394 (2)−0.03657 (15)0.41970 (13)0.0676 (4)
H4B1.0883−0.10250.43620.081*
C5A0.5828 (2)0.46422 (17)0.88535 (13)0.0706 (5)
H5A0.65910.48320.95310.085*
C5B1.2868 (2)0.03347 (17)0.48887 (13)0.0735 (5)
H5B1.33550.01420.55190.088*
C6A0.4644 (2)0.35943 (17)0.84996 (13)0.0703 (4)
H6A0.46050.30790.89340.084*
C6B1.3643 (2)0.13218 (16)0.46669 (13)0.0695 (4)
H6B1.46460.17930.51420.083*
C7A0.3520 (2)0.33197 (14)0.74959 (12)0.0600 (4)
H7A0.27300.26080.72540.072*
C7B1.29124 (19)0.16031 (14)0.37294 (12)0.0574 (4)
H7B1.34290.22720.35800.069*
C8A0.07493 (18)0.46900 (12)0.34649 (11)0.0511 (3)
C8B0.73501 (18)0.04005 (13)−0.03593 (11)0.0507 (3)
C9A0.1698 (2)0.58289 (14)0.36363 (12)0.0589 (4)
H9A0.25300.61840.42790.071*
C9B0.66057 (19)−0.07671 (13)−0.04234 (12)0.0549 (3)
H9B0.7039−0.11340.01080.066*
C10A0.1391 (2)0.64216 (14)0.28470 (12)0.0622 (4)
H10A0.20150.71820.29650.075*
C10B0.5233 (2)−0.13687 (13)−0.12740 (12)0.0571 (4)
H10B0.4750−0.2146−0.13140.068*
C11A0.0169 (2)0.59024 (13)0.18796 (12)0.0558 (4)
C11B0.45513 (19)−0.08366 (13)−0.20774 (11)0.0539 (3)
C12A−0.0775 (2)0.47666 (14)0.17121 (12)0.0587 (4)
H12A−0.16040.44120.10680.070*
C12B0.5284 (2)0.03318 (14)−0.20013 (12)0.0595 (4)
H12B0.48340.0704−0.25260.071*
C13A−0.0485 (2)0.41730 (13)0.24934 (11)0.0575 (4)
H13A−0.11180.34160.23740.069*
C13B0.6654 (2)0.09324 (13)−0.11637 (12)0.0582 (4)
H13B0.71340.1709−0.11270.070*
C14A−0.0144 (2)0.65174 (15)0.10526 (13)0.0638 (4)
C14B0.3157 (2)−0.14810 (14)−0.29808 (13)0.0587 (4)
H1NA0.021 (2)0.3362 (16)0.4094 (14)0.077 (5)*
H1NB0.934 (2)0.1706 (16)0.0406 (13)0.072 (5)*
H1OA0.397 (3)0.559 (2)0.5941 (17)0.103 (7)*
H1OB0.886 (3)−0.0526 (18)0.2020 (16)0.090 (7)*
U11U22U33U12U13U23
O1A0.0813 (8)0.0629 (7)0.0783 (8)−0.0142 (6)−0.0038 (7)0.0360 (6)
O1B0.0827 (8)0.0657 (7)0.0713 (7)−0.0186 (6)0.0021 (6)0.0304 (6)
N1A0.0542 (7)0.0505 (6)0.0489 (6)0.0056 (5)0.0068 (5)0.0149 (5)
N1B0.0551 (7)0.0543 (7)0.0490 (6)0.0068 (5)0.0130 (5)0.0201 (5)
N2A0.0620 (8)0.0531 (7)0.0537 (7)−0.0011 (6)−0.0009 (6)0.0186 (6)
N2B0.0639 (8)0.0588 (7)0.0542 (7)−0.0017 (6)0.0061 (6)0.0255 (6)
N3A0.0952 (11)0.0772 (10)0.0642 (8)−0.0075 (8)0.0078 (8)0.0344 (8)
N3B0.0674 (9)0.0678 (9)0.0666 (8)−0.0049 (7)0.0042 (7)0.0149 (7)
C1A0.0532 (8)0.0452 (7)0.0546 (8)0.0044 (6)0.0127 (6)0.0150 (6)
C1B0.0511 (7)0.0469 (7)0.0535 (7)0.0052 (6)0.0171 (6)0.0170 (6)
C2A0.0508 (7)0.0456 (7)0.0499 (7)0.0109 (6)0.0147 (6)0.0154 (6)
C2B0.0489 (7)0.0467 (7)0.0487 (7)0.0097 (6)0.0160 (6)0.0131 (6)
C3A0.0546 (8)0.0493 (7)0.0563 (8)0.0079 (6)0.0107 (6)0.0190 (6)
C3B0.0598 (8)0.0494 (8)0.0547 (8)0.0055 (6)0.0142 (7)0.0165 (6)
C4A0.0608 (9)0.0606 (9)0.0655 (10)0.0049 (7)0.0017 (7)0.0142 (8)
C4B0.0817 (11)0.0636 (10)0.0624 (9)0.0119 (8)0.0186 (8)0.0291 (8)
C5A0.0726 (11)0.0796 (11)0.0534 (9)0.0201 (9)0.0019 (8)0.0198 (8)
C5B0.0836 (12)0.0823 (12)0.0557 (9)0.0239 (10)0.0102 (8)0.0265 (9)
C6A0.0845 (12)0.0761 (11)0.0603 (9)0.0232 (9)0.0188 (8)0.0351 (8)
C6B0.0619 (9)0.0756 (11)0.0581 (9)0.0098 (8)0.0015 (7)0.0103 (8)
C7A0.0683 (9)0.0538 (8)0.0617 (9)0.0086 (7)0.0180 (7)0.0242 (7)
C7B0.0532 (8)0.0548 (8)0.0602 (8)0.0051 (6)0.0139 (7)0.0116 (7)
C8A0.0539 (8)0.0500 (7)0.0495 (7)0.0119 (6)0.0120 (6)0.0150 (6)
C8B0.0521 (8)0.0523 (8)0.0488 (7)0.0081 (6)0.0152 (6)0.0151 (6)
C9A0.0634 (9)0.0555 (8)0.0499 (8)0.0006 (7)0.0058 (7)0.0140 (6)
C9B0.0594 (8)0.0542 (8)0.0547 (8)0.0100 (6)0.0156 (7)0.0226 (6)
C10A0.0691 (10)0.0536 (8)0.0599 (9)−0.0006 (7)0.0134 (7)0.0180 (7)
C10B0.0604 (9)0.0495 (8)0.0625 (9)0.0053 (6)0.0192 (7)0.0173 (7)
C11A0.0605 (9)0.0572 (8)0.0527 (8)0.0104 (7)0.0152 (7)0.0211 (7)
C11B0.0520 (8)0.0563 (8)0.0518 (8)0.0065 (6)0.0147 (6)0.0128 (6)
C12A0.0597 (9)0.0593 (9)0.0510 (8)0.0072 (7)0.0049 (7)0.0160 (7)
C12B0.0637 (9)0.0586 (9)0.0551 (8)0.0080 (7)0.0093 (7)0.0226 (7)
C13A0.0608 (9)0.0486 (8)0.0558 (8)0.0032 (6)0.0058 (7)0.0140 (6)
C13B0.0629 (9)0.0515 (8)0.0578 (8)0.0025 (7)0.0094 (7)0.0218 (7)
C14A0.0679 (10)0.0624 (9)0.0581 (9)0.0013 (7)0.0112 (7)0.0219 (7)
C14B0.0591 (9)0.0559 (8)0.0608 (9)0.0058 (7)0.0169 (7)0.0171 (7)
O1A—C3A1.3559 (17)C5B—C6B1.377 (3)
O1A—H1OA0.98 (2)C5B—H5B0.9300
O1B—C3B1.3520 (18)C6A—C7A1.376 (2)
O1B—H1OB0.90 (2)C6A—H6A0.9300
N1A—C1A1.2865 (17)C6B—C7B1.382 (2)
N1A—N2A1.3597 (16)C6B—H6B0.9300
N1B—C1B1.2801 (18)C7A—H7A0.9300
N1B—N2B1.3674 (16)C7B—H7B0.9300
N2A—C8A1.3734 (18)C8A—C13A1.3943 (19)
N2A—H1NA0.914 (18)C8A—C9A1.399 (2)
N2B—C8B1.3709 (18)C8B—C13B1.397 (2)
N2B—H1NB0.894 (18)C8B—C9B1.4008 (19)
N3A—C14A1.140 (2)C9A—C10A1.379 (2)
N3B—C14B1.142 (2)C9A—H9A0.9300
C1A—C2A1.4453 (19)C9B—C10B1.374 (2)
C1A—H1A0.9300C9B—H9B0.9300
C1B—C2B1.4517 (19)C10A—C11A1.387 (2)
C1B—H1B0.9300C10A—H10A0.9300
C2A—C7A1.3951 (19)C10B—C11B1.393 (2)
C2A—C3A1.402 (2)C10B—H10B0.9300
C2B—C7B1.3925 (19)C11A—C12A1.395 (2)
C2B—C3B1.4017 (19)C11A—C14A1.439 (2)
C3A—C4A1.383 (2)C11B—C12B1.394 (2)
C3B—C4B1.391 (2)C11B—C14B1.432 (2)
C4A—C5A1.373 (2)C12A—C13A1.370 (2)
C4A—H4A0.9300C12A—H12A0.9300
C4B—C5B1.367 (3)C12B—C13B1.363 (2)
C4B—H4B0.9300C12B—H12B0.9300
C5A—C6A1.378 (3)C13A—H13A0.9300
C5A—H5A0.9300C13B—H13B0.9300
C3A—O1A—H1OA106.5 (13)C7B—C6B—H6B120.4
C3B—O1B—H1OB108.4 (13)C6A—C7A—C2A121.60 (15)
C1A—N1A—N2A116.26 (12)C6A—C7A—H7A119.2
C1B—N1B—N2B117.48 (12)C2A—C7A—H7A119.2
N1A—N2A—C8A121.92 (12)C6B—C7B—C2B121.27 (15)
N1A—N2A—H1NA119.3 (11)C6B—C7B—H7B119.4
C8A—N2A—H1NA118.6 (11)C2B—C7B—H7B119.4
N1B—N2B—C8B120.79 (12)N2A—C8A—C13A117.82 (13)
N1B—N2B—H1NB117.9 (11)N2A—C8A—C9A123.00 (13)
C8B—N2B—H1NB120.8 (11)C13A—C8A—C9A119.18 (13)
N1A—C1A—C2A122.47 (13)N2B—C8B—C13B118.37 (13)
N1A—C1A—H1A118.8N2B—C8B—C9B122.92 (13)
C2A—C1A—H1A118.8C13B—C8B—C9B118.71 (13)
N1B—C1B—C2B122.14 (12)C10A—C9A—C8A119.59 (14)
N1B—C1B—H1B118.9C10A—C9A—H9A120.2
C2B—C1B—H1B118.9C8A—C9A—H9A120.2
C7A—C2A—C3A117.93 (13)C10B—C9B—C8B119.81 (13)
C7A—C2A—C1A119.35 (13)C10B—C9B—H9B120.1
C3A—C2A—C1A122.70 (13)C8B—C9B—H9B120.1
C7B—C2B—C3B118.45 (13)C9A—C10A—C11A121.09 (14)
C7B—C2B—C1B119.12 (13)C9A—C10A—H10A119.5
C3B—C2B—C1B122.43 (13)C11A—C10A—H10A119.5
O1A—C3A—C4A118.18 (14)C9B—C10B—C11B121.24 (13)
O1A—C3A—C2A121.55 (13)C9B—C10B—H10B119.4
C4A—C3A—C2A120.27 (14)C11B—C10B—H10B119.4
O1B—C3B—C4B118.20 (14)C10A—C11A—C12A119.13 (13)
O1B—C3B—C2B122.02 (13)C10A—C11A—C14A121.12 (14)
C4B—C3B—C2B119.78 (15)C12A—C11A—C14A119.75 (14)
C5A—C4A—C3A120.18 (16)C10B—C11B—C12B118.66 (14)
C5A—C4A—H4A119.9C10B—C11B—C14B121.05 (14)
C3A—C4A—H4A119.9C12B—C11B—C14B120.26 (14)
C5B—C4B—C3B120.29 (16)C13A—C12A—C11A120.19 (14)
C5B—C4B—H4B119.9C13A—C12A—H12A119.9
C3B—C4B—H4B119.9C11A—C12A—H12A119.9
C4A—C5A—C6A120.81 (15)C13B—C12B—C11B120.49 (14)
C4A—C5A—H5A119.6C13B—C12B—H12B119.8
C6A—C5A—H5A119.6C11B—C12B—H12B119.8
C4B—C5B—C6B121.02 (15)C12A—C13A—C8A120.82 (14)
C4B—C5B—H5B119.5C12A—C13A—H13A119.6
C6B—C5B—H5B119.5C8A—C13A—H13A119.6
C7A—C6A—C5A119.21 (15)C12B—C13B—C8B121.09 (14)
C7A—C6A—H6A120.4C12B—C13B—H13B119.5
C5A—C6A—H6A120.4C8B—C13B—H13B119.5
C5B—C6B—C7B119.19 (16)N3A—C14A—C11A179.3 (2)
C5B—C6B—H6B120.4N3B—C14B—C11B179.48 (19)
C13A—C8A—N2A—N1A175.98 (13)C13B—C8B—N2B—N1B172.55 (13)
C8A—N2A—N1A—C1A179.44 (14)C8B—N2B—N1B—C1B175.41 (13)
N2A—N1A—C1A—C2A−179.93 (13)N2B—N1B—C1B—C2B177.44 (12)
N1A—C1A—C2A—C3A0.2 (2)N1B—C1B—C2B—C3B−1.4 (2)
C1A—C2A—C3A—O1A−1.3 (2)C1B—C2B—C3B—O1B0.2 (2)
D—H···AD—HH···AD···AD—H···A
O1A—H1OA···N1A0.98 (2)1.77 (2)2.654 (2)149 (2)
O1B—H1OB···N1B0.90 (2)1.86 (2)2.653 (2)147 (2)
N2A—H1NA···N3Bi0.91 (2)2.17 (2)3.065 (2)166 (2)
N2B—H1NB···N3Aii0.89 (2)2.25 (2)3.098 (2)158 (2)
C7A—H7A···O1Biii0.932.553.427 (2)156
C7B—H7B···O1Aiv0.932.493.413 (2)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1A—H1OA⋯N1A 0.98 (2)1.77 (2)2.654 (2)149 (2)
O1B—H1OB⋯N1B 0.90 (2)1.86 (2)2.653 (2)147 (2)
N2A—H1NA⋯N3B i 0.91 (2)2.17 (2)3.065 (2)166 (2)
N2B—H1NB⋯N3A ii 0.89 (2)2.25 (2)3.098 (2)158 (2)
C7A—H7A⋯O1B iii 0.932.553.427 (2)156
C7B—H7B⋯O1A iv 0.932.493.413 (2)172

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors:  V T Dao; C Gaspard; M Mayer; G H Werner; S N Nguyen; R J Michelot
Journal:  Eur J Med Chem       Date:  2000-09       Impact factor: 6.514

4.  {6,6'-Dieth-oxy-2,2'-[2,2-dimethyl-propane-1,3-diylbis(nitrilo-methyl-idyne)]diphenolato}nickel(II) monohydrate.

Authors:  Hadi Kargar; Arezoo Jamshidvand; Hoong-Kun Fun; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-14

5.  2,2'-[(E,E)-cis-(Cyclo-hexane-1,4-di-yl)bis-(nitrilo-methanylyl-idene)]diphenol.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Muhammad N Tahir; Antar A Abdelhamid
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26

6.  {6,6'-Dimeth-oxy-2,2'-[2,2-dimethyl-propane-1,3-diylbis(nitrilo-methyl-idyne)]diphenolato}nickel(II) 1.78-hydrate.

Authors:  Chin Sing Yeap; Reza Kia; Hadi Kargar; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-25

7.  2-((E)-{[4-(Hy-droxy-meth-yl)phen-yl]imino}-meth-yl)phenol.

Authors:  Shaaban K Mohamed; Antar A Abdelhamid; Mehmet Akkurt; Phillip E Fanwick; A M Maharramov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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