Literature DB >> 22719660

2,2'-[(E,E)-cis-(Cyclo-hexane-1,4-di-yl)bis-(nitrilo-methanylyl-idene)]diphenol.

Shaaban K Mohamed, Mehmet Akkurt, Muhammad N Tahir, Antar A Abdelhamid.   

Abstract

In the title compound, C(20)H(22)N(2)O(2), the asymmetric unit contains two independent half-mol-ecules, which are both completed by crystallographic inversion symmetry. The cyclo-hexane rings of both mol-ecules adopt chair conformations; the N atoms are in equatorial orientations in one mol-ecule and in axial orientations in the other. Both mol-ecules feature two intra-molecular O-H⋯N hydrogen bonds, which generate S(6) rings.

Entities:  

Year:  2012        PMID: 22719660      PMCID: PMC3379462          DOI: 10.1107/S1600536812023367

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Schiff bases as ligands, see: Li & Zhang (2004 ▶).

Experimental

Crystal data

C20H22N2O2 M = 322.40 Monoclinic, a = 16.2979 (11) Å b = 6.1103 (4) Å c = 18.2336 (12) Å β = 104.975 (4)° V = 1754.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.32 × 0.28 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.975, T max = 0.980 12904 measured reflections 3428 independent reflections 1641 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.140 S = 1.01 3428 reflections 219 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.13 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023367/hb6813sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023367/hb6813Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22N2O2F(000) = 688
Mr = 322.40Dx = 1.221 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 355 reflections
a = 16.2979 (11) Åθ = 3.5–18°
b = 6.1103 (4) ŵ = 0.08 mm1
c = 18.2336 (12) ÅT = 296 K
β = 104.975 (4)°Prism, light yellow
V = 1754.1 (2) Å30.32 × 0.28 × 0.25 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3428 independent reflections
Radiation source: fine-focus sealed tube1641 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
Detector resolution: 0.81 pixels mm-1θmax = 26.0°, θmin = 2.3°
ω scansh = −20→17
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −7→7
Tmin = 0.975, Tmax = 0.980l = −22→22
12904 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0527P)2 + 0.1881P] where P = (Fo2 + 2Fc2)/3
3428 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.13 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.09064 (11)−0.2099 (2)0.21955 (9)0.0798 (7)
N10.07675 (13)0.0983 (3)0.12044 (10)0.0689 (8)
C10.13461 (14)−0.0662 (4)0.27110 (13)0.0590 (9)
C20.16439 (15)−0.1325 (4)0.34525 (13)0.0737 (10)
C30.20939 (17)0.0070 (6)0.39911 (15)0.0845 (11)
C40.22627 (17)0.2171 (6)0.37967 (16)0.0878 (14)
C50.19641 (15)0.2847 (4)0.30586 (15)0.0732 (10)
C60.15061 (13)0.1469 (4)0.25003 (12)0.0540 (8)
C70.11732 (14)0.2225 (4)0.17308 (13)0.0629 (9)
C80.0412 (2)0.1898 (4)0.04433 (14)0.0798 (12)
C90.07984 (17)0.0747 (5)−0.01193 (15)0.0893 (13)
C10−0.05416 (19)0.1620 (5)0.02264 (14)0.0895 (13)
O20.24999 (12)−0.0079 (3)0.60105 (10)0.0906 (8)
N20.15493 (13)0.3363 (3)0.59279 (11)0.0689 (8)
C110.30811 (17)0.0985 (4)0.65534 (13)0.0658 (10)
C120.3858 (2)−0.0030 (4)0.68695 (16)0.0789 (11)
C130.44577 (18)0.1016 (5)0.74179 (17)0.0835 (12)
C140.43165 (18)0.3068 (5)0.76653 (15)0.0827 (12)
C150.35547 (17)0.4075 (4)0.73567 (14)0.0726 (10)
C160.29237 (15)0.3078 (4)0.67939 (13)0.0594 (9)
C170.21310 (16)0.4199 (4)0.64521 (13)0.0639 (9)
C180.07848 (17)0.4641 (4)0.56020 (12)0.0707 (10)
C190.08057 (16)0.5442 (5)0.48189 (14)0.0877 (11)
C200.00025 (17)0.3308 (5)0.55562 (15)0.0893 (11)
H10.07470−0.149500.178100.0960*
H20.15370−0.274400.358800.0880*
H30.22880−0.039800.449200.1020*
H40.257600.312000.416200.1050*
H50.207300.427200.293000.0880*
H70.125900.367700.161700.0760*
H80.054800.346100.044900.0960*
H9A0.062500.14910−0.060500.1070*
H9B0.141200.083800.005500.1070*
H10A−0.077100.224800.062000.1070*
H10B−0.078200.24110−0.024100.1070*
H2A0.207300.067900.587200.1090*
H120.39670−0.141700.670700.0950*
H130.497300.032500.762900.1000*
H140.473300.376600.803800.0990*
H150.345700.546000.752800.0870*
H170.204700.559100.662600.0770*
H180.077700.591300.592800.0850*
H19A0.086500.420100.450500.1050*
H19B0.129400.638900.486200.1050*
H20A−0.001500.288000.606400.1070*
H20B0.002800.198500.526900.1070*
U11U22U33U12U13U23
O10.1064 (14)0.0639 (10)0.0648 (11)−0.0200 (10)0.0146 (10)0.0018 (8)
N10.0927 (15)0.0592 (12)0.0533 (12)−0.0029 (11)0.0160 (10)0.0030 (10)
C10.0618 (15)0.0655 (16)0.0526 (14)−0.0007 (13)0.0202 (11)−0.0056 (12)
C20.0842 (19)0.0826 (18)0.0583 (16)0.0068 (15)0.0257 (13)0.0046 (14)
C30.084 (2)0.114 (2)0.0565 (17)0.0167 (18)0.0201 (14)−0.0041 (17)
C40.0716 (19)0.114 (3)0.073 (2)−0.0034 (17)0.0099 (15)−0.0310 (18)
C50.0669 (17)0.0738 (17)0.0834 (19)−0.0097 (13)0.0274 (14)−0.0203 (15)
C60.0537 (14)0.0567 (14)0.0558 (14)−0.0014 (11)0.0217 (11)−0.0057 (12)
C70.0736 (17)0.0543 (14)0.0672 (16)−0.0008 (12)0.0296 (13)0.0013 (13)
C80.120 (3)0.0562 (15)0.0589 (16)0.0001 (16)0.0152 (16)0.0100 (13)
C90.083 (2)0.120 (3)0.0661 (18)−0.0034 (18)0.0212 (14)0.0239 (17)
C100.107 (3)0.100 (2)0.0625 (17)0.0366 (19)0.0238 (16)−0.0014 (15)
O20.1192 (16)0.0754 (12)0.0774 (13)0.0202 (11)0.0259 (11)−0.0102 (10)
N20.0781 (15)0.0755 (14)0.0541 (12)0.0147 (12)0.0189 (10)0.0012 (11)
C110.085 (2)0.0656 (17)0.0548 (15)0.0085 (15)0.0327 (14)0.0045 (13)
C120.101 (2)0.0716 (18)0.0787 (19)0.0263 (18)0.0497 (17)0.0179 (15)
C130.073 (2)0.104 (2)0.084 (2)0.0205 (18)0.0391 (17)0.0301 (18)
C140.067 (2)0.097 (2)0.088 (2)−0.0028 (17)0.0271 (15)0.0135 (17)
C150.0768 (19)0.0668 (16)0.0809 (18)−0.0025 (15)0.0324 (15)0.0048 (14)
C160.0693 (17)0.0588 (15)0.0594 (15)0.0058 (13)0.0335 (13)0.0077 (12)
C170.0772 (18)0.0605 (15)0.0622 (16)0.0092 (14)0.0328 (13)0.0061 (13)
C180.0829 (19)0.0775 (17)0.0530 (15)0.0188 (16)0.0202 (12)0.0007 (13)
C190.0816 (19)0.109 (2)0.0774 (19)0.0142 (17)0.0296 (14)0.0299 (16)
C200.089 (2)0.104 (2)0.0797 (19)0.0131 (19)0.0304 (15)0.0309 (16)
O1—C11.349 (3)C9—H9A0.9700
O1—H10.8200C9—H9B0.9700
O2—C111.347 (3)C10—H10B0.9700
O2—H2A0.8200C10—H10A0.9700
N1—C71.267 (3)C11—C161.397 (3)
N1—C81.469 (3)C11—C121.394 (4)
N2—C181.460 (3)C12—C131.363 (4)
N2—C171.267 (3)C13—C141.372 (4)
C1—C61.401 (3)C14—C151.370 (4)
C1—C21.374 (3)C15—C161.392 (4)
C2—C31.363 (4)C16—C171.453 (4)
C3—C41.378 (5)C18—C201.497 (4)
C4—C51.371 (4)C18—C191.518 (3)
C5—C61.382 (3)C19—C20ii1.523 (4)
C6—C71.443 (3)C12—H120.9300
C8—C101.511 (5)C13—H130.9300
C8—C91.509 (4)C14—H140.9300
C9—C10i1.504 (4)C15—H150.9300
C2—H20.9300C17—H170.9300
C3—H30.9300C18—H180.9800
C4—H40.9300C19—H19A0.9700
C5—H50.9300C19—H19B0.9700
C7—H70.9300C20—H20A0.9700
C8—H80.9800C20—H20B0.9700
C1—O1—H1109.00H10A—C10—H10B108.00
C11—O2—H2A109.00C8—C10—H10A109.00
C7—N1—C8119.3 (2)O2—C11—C12118.7 (2)
C17—N2—C18119.0 (2)C12—C11—C16119.9 (2)
O1—C1—C2118.9 (2)O2—C11—C16121.4 (2)
C2—C1—C6120.0 (2)C11—C12—C13119.8 (2)
O1—C1—C6121.1 (2)C12—C13—C14121.4 (3)
C1—C2—C3120.8 (2)C13—C14—C15119.1 (3)
C2—C3—C4120.2 (3)C14—C15—C16121.7 (2)
C3—C4—C5119.3 (3)C11—C16—C15118.1 (2)
C4—C5—C6121.8 (3)C11—C16—C17120.8 (2)
C1—C6—C5117.9 (2)C15—C16—C17121.1 (2)
C1—C6—C7120.9 (2)N2—C17—C16122.9 (2)
C5—C6—C7121.1 (2)N2—C18—C19109.3 (2)
N1—C7—C6122.4 (2)N2—C18—C20110.9 (2)
N1—C8—C10109.4 (2)C19—C18—C20110.4 (2)
C9—C8—C10110.6 (2)C18—C19—C20ii110.9 (2)
N1—C8—C9109.4 (2)C18—C20—C19ii112.2 (2)
C8—C9—C10i112.7 (2)C11—C12—H12120.00
C8—C10—C9i112.0 (2)C13—C12—H12120.00
C1—C2—H2120.00C12—C13—H13119.00
C3—C2—H2120.00C14—C13—H13119.00
C4—C3—H3120.00C13—C14—H14120.00
C2—C3—H3120.00C15—C14—H14120.00
C3—C4—H4120.00C14—C15—H15119.00
C5—C4—H4120.00C16—C15—H15119.00
C6—C5—H5119.00N2—C17—H17119.00
C4—C5—H5119.00C16—C17—H17119.00
C6—C7—H7119.00N2—C18—H18109.00
N1—C7—H7119.00C19—C18—H18109.00
C9—C8—H8109.00C20—C18—H18109.00
C10—C8—H8109.00C18—C19—H19A109.00
N1—C8—H8109.00C18—C19—H19B109.00
C8—C9—H9B109.00H19A—C19—H19B108.00
C8—C9—H9A109.00C20ii—C19—H19A109.00
C10i—C9—H9B109.00C20ii—C19—H19B109.00
H9A—C9—H9B108.00C18—C20—H20A109.00
C10i—C9—H9A109.00C18—C20—H20B109.00
C8—C10—H10B109.00H20A—C20—H20B108.00
C9i—C10—H10A109.00C19ii—C20—H20A109.00
C9i—C10—H10B109.00C19ii—C20—H20B109.00
C8—N1—C7—C6177.0 (2)N1—C8—C10—C9i−67.2 (3)
C7—N1—C8—C9119.4 (3)C9—C8—C10—C9i53.4 (3)
C7—N1—C8—C10−119.3 (3)C8—C9—C10i—C8i54.6 (3)
C18—N2—C17—C16−178.1 (2)O2—C11—C12—C13179.8 (3)
C17—N2—C18—C19105.8 (3)C16—C11—C12—C130.7 (4)
C17—N2—C18—C20−132.2 (2)O2—C11—C16—C15−179.9 (2)
O1—C1—C2—C3179.7 (2)O2—C11—C16—C17−1.4 (4)
C6—C1—C2—C30.2 (4)C12—C11—C16—C15−0.9 (4)
O1—C1—C6—C5−179.7 (2)C12—C11—C16—C17177.7 (2)
C2—C1—C6—C7−177.7 (2)C11—C12—C13—C14−0.4 (5)
O1—C1—C6—C72.8 (3)C12—C13—C14—C150.4 (4)
C2—C1—C6—C5−0.2 (3)C13—C14—C15—C16−0.6 (4)
C1—C2—C3—C4−0.5 (4)C14—C15—C16—C110.8 (4)
C2—C3—C4—C50.8 (4)C14—C15—C16—C17−177.7 (2)
C3—C4—C5—C6−0.8 (4)C11—C16—C17—N20.0 (4)
C4—C5—C6—C10.5 (4)C15—C16—C17—N2178.5 (2)
C4—C5—C6—C7178.0 (2)N2—C18—C19—C20ii177.3 (2)
C1—C6—C7—N1−4.2 (4)C20—C18—C19—C20ii55.0 (3)
C5—C6—C7—N1178.4 (2)N2—C18—C20—C19ii−177.1 (2)
C10—C8—C9—C10i−53.8 (3)C19—C18—C20—C19ii−55.7 (3)
N1—C8—C9—C10i66.8 (3)C18—C19—C20ii—C18ii−56.0 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.852.579 (2)148
O2—H2A···N20.821.862.593 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.852.579 (2)148
O2—H2A⋯N20.821.862.593 (3)148
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
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1.  4-[(2E)-2-(2-Hy-droxy-benzyl-idene)hydrazin-1-yl]benzonitrile.

Authors:  Shaaban K Mohamed; Goran A Bogdanović; Antar A Abdelhamid; Sladjana B Novaković; Herman Potgeiter
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08
  1 in total

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