| Literature DB >> 23125658 |
Mohamed Anouar Harrad1, Brahim Boualy, Mustapha Ait Ali, Larbi El Firdoussi, Helen Stoeckli-Evans.
Abstract
The whole mol-ecule of the title β-enamino-ester, C(16)H(28)N(2)O(4), is generated by a crystallographic inversion center, situated at the mid-point of the central C-C bond of the 1,4-diamino-butane segment. There are two intra-molecular N-H⋯O hydrogen bonds that generate S(6) ring motifs. This leads to the Z conformation about the C=C bonds [1.3756 (17) Å]. The mol-ecule is S-shaped with the planar central 1,4-diamino-butane segment [maximum deviation for non H-atoms = 0.0058 (13) Å] being inclined to the ethyl butyl-enonate fragment [C-C-O-C-C=C-C; maximum deviation = 0.0710 (12) Å] by 15.56 (10)°. In the crystal, mol-ecules are linked via C-H⋯O inter-actions, leading to the formation of an undulating two-dimensional network lying parallel to the bc plane.Entities:
Year: 2012 PMID: 23125658 PMCID: PMC3470214 DOI: 10.1107/S1600536812036823
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H28N2O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 8450 reflections |
| θ = 2.3–26.2° | |
| µ = 0.08 mm−1 | |
| β = 98.547 (6)° | Block, colourless |
| 0.45 × 0.40 × 0.30 mm | |
| Stoe IPDS 2 diffractometer | 1661 independent reflections |
| Radiation source: fine-focus sealed tube | 1392 reflections with |
| Plane graphite monochromator | |
| φ + ω scans | θmax = 25.7°, θmin = 2.3° |
| Absorption correction: multi-scan (MULscanABS in | |
| 9379 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 1661 reflections | Δρmax = 0.15 e Å−3 |
| 107 parameters | Δρmin = −0.14 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.015 (4) |
| Geometry. Bond distances, angles |
| Refinement. The NH H-atom was located in a difference electron-density map and freely
refined. The C-bound H-atoms were included in calculated positions and treated
as riding atoms: C—H = 0.95, 0.99 and 0.98, Å for CH(allyl), CH2 and
CH3 H-atoms, respectively, with |
| O1 | 0.93675 (15) | 0.33513 (7) | 0.19771 (7) | 0.0277 (3) | |
| O2 | 0.72096 (15) | 0.23004 (7) | 0.07166 (7) | 0.0282 (3) | |
| N1 | 0.37954 (19) | 0.12458 (8) | 0.15569 (9) | 0.0252 (3) | |
| C1 | 1.2379 (2) | 0.44490 (11) | 0.15191 (13) | 0.0358 (4) | |
| C2 | 1.0631 (2) | 0.36486 (10) | 0.10551 (12) | 0.0312 (4) | |
| C3 | 0.7649 (2) | 0.26399 (9) | 0.17015 (10) | 0.0231 (3) | |
| C4 | 0.6507 (2) | 0.23715 (9) | 0.26565 (10) | 0.0237 (3) | |
| C5 | 0.4629 (2) | 0.17140 (9) | 0.25516 (10) | 0.0231 (3) | |
| C6 | 0.1806 (2) | 0.05468 (10) | 0.13799 (11) | 0.0274 (4) | |
| C7 | 0.1049 (2) | 0.03591 (10) | 0.01049 (11) | 0.0277 (4) | |
| C8 | 0.3384 (2) | 0.15152 (11) | 0.35620 (11) | 0.0299 (4) | |
| H1A | 1.15460 | 0.50510 | 0.17410 | 0.0540* | |
| H1B | 1.33290 | 0.46370 | 0.09260 | 0.0540* | |
| H1C | 1.34010 | 0.41820 | 0.21930 | 0.0540* | |
| H1N | 0.458 (3) | 0.1381 (11) | 0.0988 (13) | 0.033 (4)* | |
| H2A | 0.95300 | 0.39230 | 0.04010 | 0.0370* | |
| H2B | 1.14480 | 0.30530 | 0.07830 | 0.0370* | |
| H4 | 0.70620 | 0.26570 | 0.33890 | 0.0280* | |
| H6A | 0.04810 | 0.08390 | 0.17190 | 0.0330* | |
| H6B | 0.22510 | −0.01070 | 0.17720 | 0.0330* | |
| H7A | 0.23740 | 0.00610 | −0.02300 | 0.0330* | |
| H7B | 0.06300 | 0.10160 | −0.02860 | 0.0330* | |
| H8A | 0.32040 | 0.07790 | 0.36570 | 0.0450* | |
| H8B | 0.18330 | 0.18370 | 0.34310 | 0.0450* | |
| H8C | 0.43020 | 0.17990 | 0.42580 | 0.0450* |
| O1 | 0.0308 (5) | 0.0273 (5) | 0.0257 (5) | −0.0067 (4) | 0.0069 (4) | −0.0027 (4) |
| O2 | 0.0339 (5) | 0.0306 (5) | 0.0198 (4) | −0.0040 (4) | 0.0030 (4) | −0.0016 (4) |
| N1 | 0.0257 (6) | 0.0282 (6) | 0.0215 (5) | −0.0047 (4) | 0.0026 (4) | −0.0014 (4) |
| C1 | 0.0339 (7) | 0.0320 (8) | 0.0439 (8) | −0.0050 (6) | 0.0133 (6) | −0.0005 (6) |
| C2 | 0.0361 (7) | 0.0287 (7) | 0.0305 (7) | −0.0037 (6) | 0.0110 (6) | 0.0022 (5) |
| C3 | 0.0240 (6) | 0.0198 (6) | 0.0242 (6) | 0.0023 (5) | −0.0002 (5) | −0.0004 (5) |
| C4 | 0.0262 (6) | 0.0251 (6) | 0.0191 (6) | −0.0005 (5) | 0.0008 (5) | −0.0028 (5) |
| C5 | 0.0242 (6) | 0.0232 (6) | 0.0211 (6) | 0.0044 (5) | 0.0006 (5) | 0.0007 (5) |
| C6 | 0.0270 (6) | 0.0273 (7) | 0.0266 (7) | −0.0049 (5) | −0.0002 (5) | 0.0000 (5) |
| C7 | 0.0280 (6) | 0.0275 (7) | 0.0269 (7) | −0.0034 (5) | 0.0016 (5) | −0.0034 (5) |
| C8 | 0.0277 (7) | 0.0375 (7) | 0.0242 (7) | −0.0025 (6) | 0.0033 (5) | −0.0004 (5) |
| O1—C2 | 1.4467 (16) | C1—H1B | 0.9800 |
| O1—C3 | 1.3650 (15) | C1—H1C | 0.9800 |
| O2—C3 | 1.2318 (14) | C2—H2A | 0.9900 |
| N1—C5 | 1.3454 (16) | C2—H2B | 0.9900 |
| N1—C6 | 1.4592 (16) | C4—H4 | 0.9500 |
| N1—H1N | 0.880 (16) | C6—H6A | 0.9900 |
| C1—C2 | 1.5013 (19) | C6—H6B | 0.9900 |
| C3—C4 | 1.4277 (17) | C7—H7A | 0.9900 |
| C4—C5 | 1.3756 (17) | C7—H7B | 0.9900 |
| C5—C8 | 1.4994 (17) | C8—H8A | 0.9800 |
| C6—C7 | 1.5182 (18) | C8—H8B | 0.9800 |
| C7—C7i | 1.5243 (17) | C8—H8C | 0.9800 |
| C1—H1A | 0.9800 | ||
| C2—O1—C3 | 115.78 (9) | C1—C2—H2A | 110.00 |
| C5—N1—C6 | 125.66 (11) | C1—C2—H2B | 110.00 |
| C5—N1—H1N | 114.3 (10) | H2A—C2—H2B | 108.00 |
| C6—N1—H1N | 120.0 (10) | C3—C4—H4 | 119.00 |
| O1—C2—C1 | 107.56 (11) | C5—C4—H4 | 119.00 |
| O1—C3—C4 | 112.65 (10) | N1—C6—H6A | 110.00 |
| O1—C3—O2 | 120.77 (10) | N1—C6—H6B | 110.00 |
| O2—C3—C4 | 126.58 (11) | C7—C6—H6A | 110.00 |
| C3—C4—C5 | 122.20 (11) | C7—C6—H6B | 110.00 |
| N1—C5—C8 | 117.28 (11) | H6A—C6—H6B | 108.00 |
| N1—C5—C4 | 122.64 (11) | C6—C7—H7A | 109.00 |
| C4—C5—C8 | 120.06 (11) | C6—C7—H7B | 109.00 |
| N1—C6—C7 | 110.33 (10) | H7A—C7—H7B | 108.00 |
| C6—C7—C7i | 111.40 (10) | C7i—C7—H7A | 109.00 |
| C2—C1—H1A | 109.00 | C7i—C7—H7B | 109.00 |
| C2—C1—H1B | 109.00 | C5—C8—H8A | 109.00 |
| C2—C1—H1C | 109.00 | C5—C8—H8B | 109.00 |
| H1A—C1—H1B | 109.00 | C5—C8—H8C | 109.00 |
| H1A—C1—H1C | 109.00 | H8A—C8—H8B | 109.00 |
| H1B—C1—H1C | 109.00 | H8A—C8—H8C | 109.00 |
| O1—C2—H2A | 110.00 | H8B—C8—H8C | 110.00 |
| O1—C2—H2B | 110.00 | ||
| C3—O1—C2—C1 | 178.47 (10) | O1—C3—C4—C5 | 176.01 (11) |
| C2—O1—C3—O2 | −1.34 (16) | O2—C3—C4—C5 | −3.6 (2) |
| C2—O1—C3—C4 | 179.00 (10) | C3—C4—C5—N1 | 2.77 (19) |
| C6—N1—C5—C4 | −179.53 (11) | C3—C4—C5—C8 | −175.62 (11) |
| C6—N1—C5—C8 | −1.09 (18) | N1—C6—C7—C7i | −179.28 (10) |
| C5—N1—C6—C7 | 167.36 (11) | C6—C7—C7i—C6i | 179.97 (16) |
| H··· | ||||
| N1—H1 | 0.880 (16) | 2.000 (16) | 2.7099 (14) | 136.9 (13) |
| C8—H8 | 0.98 | 2.51 | 3.4697 (16) | 167 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.880 (16) | 2.000 (16) | 2.7099 (14) | 136.9 (13) |
| C8—H8 | 0.98 | 2.51 | 3.4697 (16) | 167 |
Symmetry code: (i) .