Literature DB >> 23125658

(2Z,2'Z)-Diethyl 3,3'-[butane-1,4-diylbis(aza-nedi-yl)]bis-(but-2-enoate).

Mohamed Anouar Harrad1, Brahim Boualy, Mustapha Ait Ali, Larbi El Firdoussi, Helen Stoeckli-Evans.   

Abstract

The whole mol-ecule of the title β-enamino-ester, C(16)H(28)N(2)O(4), is generated by a crystallographic inversion center, situated at the mid-point of the central C-C bond of the 1,4-diamino-butane segment. There are two intra-molecular N-H⋯O hydrogen bonds that generate S(6) ring motifs. This leads to the Z conformation about the C=C bonds [1.3756 (17) Å]. The mol-ecule is S-shaped with the planar central 1,4-diamino-butane segment [maximum deviation for non H-atoms = 0.0058 (13) Å] being inclined to the ethyl butyl-enonate fragment [C-C-O-C-C=C-C; maximum deviation = 0.0710 (12) Å] by 15.56 (10)°. In the crystal, mol-ecules are linked via C-H⋯O inter-actions, leading to the formation of an undulating two-dimensional network lying parallel to the bc plane.

Entities:  

Year:  2012        PMID: 23125658      PMCID: PMC3470214          DOI: 10.1107/S1600536812036823

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the use of β-enamino esters as precursors in organic synthesis, see: Eddington et al. (2000 ▶); Palmieri & Cimarelli (1996 ▶); Zhang & Hu (2006 ▶). For the synthesis of β-enamino esters, see: Harrad et al. (2010 ▶); Hegde & Jones (1993 ▶); Lue & Greenhill (1997 ▶); Katritzky et al. (2004 ▶); Bartoli et al. (1995 ▶); Reddy et al. (2005 ▶). For the structure of related compounds, see: Harrad et al. (2011a ▶,b ▶); Amézquita-Valencia et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H28N2O4 M = 312.40 Monoclinic, a = 5.7624 (5) Å b = 13.1329 (8) Å c = 11.7601 (9) Å β = 98.547 (6)° V = 880.09 (12) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 133 K 0.45 × 0.40 × 0.30 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: multi-scan (MULscanABS in PLATON; Spek, 2009 ▶) T min = 0.679, T max = 1.000 9379 measured reflections 1661 independent reflections 1392 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.081 S = 1.04 1661 reflections 107 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.14 e Å−3 Data collection: X-AREA (Stoe & Cie, 2009 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97, PLATON and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036823/ds2210sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036823/ds2210Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812036823/ds2210Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H28N2O4F(000) = 340
Mr = 312.40Dx = 1.179 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8450 reflections
a = 5.7624 (5) Åθ = 2.3–26.2°
b = 13.1329 (8) ŵ = 0.08 mm1
c = 11.7601 (9) ÅT = 133 K
β = 98.547 (6)°Block, colourless
V = 880.09 (12) Å30.45 × 0.40 × 0.30 mm
Z = 2
Stoe IPDS 2 diffractometer1661 independent reflections
Radiation source: fine-focus sealed tube1392 reflections with I > 2σ(I)
Plane graphite monochromatorRint = 0.052
φ + ω scansθmax = 25.7°, θmin = 2.3°
Absorption correction: multi-scan (MULscanABS in PLATON; Spek, 2009)h = −7→7
Tmin = 0.679, Tmax = 1.000k = −14→15
9379 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.081w = 1/[σ2(Fo2) + (0.0346P)2 + 0.1872P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
1661 reflectionsΔρmax = 0.15 e Å3
107 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.015 (4)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. The NH H-atom was located in a difference electron-density map and freely refined. The C-bound H-atoms were included in calculated positions and treated as riding atoms: C—H = 0.95, 0.99 and 0.98, Å for CH(allyl), CH2 and CH3 H-atoms, respectively, with Uiso(H) = k × Ueq(parent C-atom), where k = 1.5 for CH3 H-atoms and = 1.2 for other H atoms.
xyzUiso*/Ueq
O10.93675 (15)0.33513 (7)0.19771 (7)0.0277 (3)
O20.72096 (15)0.23004 (7)0.07166 (7)0.0282 (3)
N10.37954 (19)0.12458 (8)0.15569 (9)0.0252 (3)
C11.2379 (2)0.44490 (11)0.15191 (13)0.0358 (4)
C21.0631 (2)0.36486 (10)0.10551 (12)0.0312 (4)
C30.7649 (2)0.26399 (9)0.17015 (10)0.0231 (3)
C40.6507 (2)0.23715 (9)0.26565 (10)0.0237 (3)
C50.4629 (2)0.17140 (9)0.25516 (10)0.0231 (3)
C60.1806 (2)0.05468 (10)0.13799 (11)0.0274 (4)
C70.1049 (2)0.03591 (10)0.01049 (11)0.0277 (4)
C80.3384 (2)0.15152 (11)0.35620 (11)0.0299 (4)
H1A1.154600.505100.174100.0540*
H1B1.332900.463700.092600.0540*
H1C1.340100.418200.219300.0540*
H1N0.458 (3)0.1381 (11)0.0988 (13)0.033 (4)*
H2A0.953000.392300.040100.0370*
H2B1.144800.305300.078300.0370*
H40.706200.265700.338900.0280*
H6A0.048100.083900.171900.0330*
H6B0.22510−0.010700.177200.0330*
H7A0.237400.00610−0.023000.0330*
H7B0.063000.10160−0.028600.0330*
H8A0.320400.077900.365700.0450*
H8B0.183300.183700.343100.0450*
H8C0.430200.179900.425800.0450*
U11U22U33U12U13U23
O10.0308 (5)0.0273 (5)0.0257 (5)−0.0067 (4)0.0069 (4)−0.0027 (4)
O20.0339 (5)0.0306 (5)0.0198 (4)−0.0040 (4)0.0030 (4)−0.0016 (4)
N10.0257 (6)0.0282 (6)0.0215 (5)−0.0047 (4)0.0026 (4)−0.0014 (4)
C10.0339 (7)0.0320 (8)0.0439 (8)−0.0050 (6)0.0133 (6)−0.0005 (6)
C20.0361 (7)0.0287 (7)0.0305 (7)−0.0037 (6)0.0110 (6)0.0022 (5)
C30.0240 (6)0.0198 (6)0.0242 (6)0.0023 (5)−0.0002 (5)−0.0004 (5)
C40.0262 (6)0.0251 (6)0.0191 (6)−0.0005 (5)0.0008 (5)−0.0028 (5)
C50.0242 (6)0.0232 (6)0.0211 (6)0.0044 (5)0.0006 (5)0.0007 (5)
C60.0270 (6)0.0273 (7)0.0266 (7)−0.0049 (5)−0.0002 (5)0.0000 (5)
C70.0280 (6)0.0275 (7)0.0269 (7)−0.0034 (5)0.0016 (5)−0.0034 (5)
C80.0277 (7)0.0375 (7)0.0242 (7)−0.0025 (6)0.0033 (5)−0.0004 (5)
O1—C21.4467 (16)C1—H1B0.9800
O1—C31.3650 (15)C1—H1C0.9800
O2—C31.2318 (14)C2—H2A0.9900
N1—C51.3454 (16)C2—H2B0.9900
N1—C61.4592 (16)C4—H40.9500
N1—H1N0.880 (16)C6—H6A0.9900
C1—C21.5013 (19)C6—H6B0.9900
C3—C41.4277 (17)C7—H7A0.9900
C4—C51.3756 (17)C7—H7B0.9900
C5—C81.4994 (17)C8—H8A0.9800
C6—C71.5182 (18)C8—H8B0.9800
C7—C7i1.5243 (17)C8—H8C0.9800
C1—H1A0.9800
C2—O1—C3115.78 (9)C1—C2—H2A110.00
C5—N1—C6125.66 (11)C1—C2—H2B110.00
C5—N1—H1N114.3 (10)H2A—C2—H2B108.00
C6—N1—H1N120.0 (10)C3—C4—H4119.00
O1—C2—C1107.56 (11)C5—C4—H4119.00
O1—C3—C4112.65 (10)N1—C6—H6A110.00
O1—C3—O2120.77 (10)N1—C6—H6B110.00
O2—C3—C4126.58 (11)C7—C6—H6A110.00
C3—C4—C5122.20 (11)C7—C6—H6B110.00
N1—C5—C8117.28 (11)H6A—C6—H6B108.00
N1—C5—C4122.64 (11)C6—C7—H7A109.00
C4—C5—C8120.06 (11)C6—C7—H7B109.00
N1—C6—C7110.33 (10)H7A—C7—H7B108.00
C6—C7—C7i111.40 (10)C7i—C7—H7A109.00
C2—C1—H1A109.00C7i—C7—H7B109.00
C2—C1—H1B109.00C5—C8—H8A109.00
C2—C1—H1C109.00C5—C8—H8B109.00
H1A—C1—H1B109.00C5—C8—H8C109.00
H1A—C1—H1C109.00H8A—C8—H8B109.00
H1B—C1—H1C109.00H8A—C8—H8C109.00
O1—C2—H2A110.00H8B—C8—H8C110.00
O1—C2—H2B110.00
C3—O1—C2—C1178.47 (10)O1—C3—C4—C5176.01 (11)
C2—O1—C3—O2−1.34 (16)O2—C3—C4—C5−3.6 (2)
C2—O1—C3—C4179.00 (10)C3—C4—C5—N12.77 (19)
C6—N1—C5—C4−179.53 (11)C3—C4—C5—C8−175.62 (11)
C6—N1—C5—C8−1.09 (18)N1—C6—C7—C7i−179.28 (10)
C5—N1—C6—C7167.36 (11)C6—C7—C7i—C6i179.97 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O20.880 (16)2.000 (16)2.7099 (14)136.9 (13)
C8—H8C···O2ii0.982.513.4697 (16)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O20.880 (16)2.000 (16)2.7099 (14)136.9 (13)
C8—H8C⋯O2i 0.982.513.4697 (16)167

Symmetry code: (i) .

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