Literature DB >> 23125633

3,3'-(Piperazine-1,4-diium-1,4-di-yl)di-propionate dihydrate.

Shouwen Jin1, Yanfei Huang, Hao Fang, Tianyi Wang, Liangliang Ding.   

Abstract

During the recrystallization of 3-[4-(2-carb-oxy-eth-yl)piperazin-1-yl]propionic acid, the carb-oxy-lic acid H atoms were transferred to the piperazine N atoms, forming the title compound, C(10)H(18)N(2)O(4)·2H(2)O, in which the zwitterion lies about an inversion center. In the crystal, bifurcated N-H⋯(O,O) hydrogen bonds connect the zwitterions into a two-dimensional framework parallel to (-102) forming R(4) (4)(30) rings. O-H⋯O hydrogen bonds involving the solvent water mol-ecules connect the two-dimensional framework into a three-dimensional network. In addition, weak C-H⋯O hydrogen bonds are observed.

Entities:  

Year:  2012        PMID: 23125633      PMCID: PMC3470189          DOI: 10.1107/S1600536812037312

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and applications of carb­oxy­lic acids, see: Jin et al. (2012 ▶); Grossel et al. (2006 ▶); Rueff et al. (2001 ▶); Strachan et al. (2007 ▶); Desiraju (2002 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C10H18N2O4·2H2O M = 266.30 Monoclinic, a = 6.8028 (6) Å b = 8.8925 (7) Å c = 10.4301 (11) Å β = 101.780 (1)° V = 617.67 (10) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 298 K 0.43 × 0.40 × 0.32 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.951, T max = 0.963 2951 measured reflections 1087 independent reflections 895 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.111 S = 1.06 1087 reflections 82 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812037312/lh5520sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037312/lh5520Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812037312/lh5520Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H18N2O4·2H2OF(000) = 288
Mr = 266.30Dx = 1.432 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1525 reflections
a = 6.8028 (6) Åθ = 3.0–28.2°
b = 8.8925 (7) ŵ = 0.12 mm1
c = 10.4301 (11) ÅT = 298 K
β = 101.780 (1)°Block, colorless
V = 617.67 (10) Å30.43 × 0.40 × 0.32 mm
Z = 2
Bruker SMART CCD diffractometer1087 independent reflections
Radiation source: fine-focus sealed tube895 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
φ and ω scansθmax = 25.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −8→7
Tmin = 0.951, Tmax = 0.963k = −10→5
2951 measured reflectionsl = −12→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0526P)2 + 0.3063P] where P = (Fo2 + 2Fc2)/3
1087 reflections(Δ/σ)max < 0.001
82 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.15979 (19)0.08898 (15)0.08004 (12)0.0204 (3)
H10.24280.01210.11370.024*
O10.56844 (18)0.37957 (15)0.31249 (12)0.0340 (4)
O20.7046 (2)0.4517 (2)0.14744 (14)0.0551 (5)
O30.8070 (2)0.10838 (18)0.40824 (15)0.0541 (5)
H3E0.74050.18610.37810.065*
H3F0.77880.08700.48180.065*
C10.5838 (2)0.3752 (2)0.19346 (17)0.0288 (4)
C20.4531 (3)0.2636 (2)0.10320 (18)0.0335 (5)
H2A0.43020.30190.01430.040*
H2B0.52560.16940.10490.040*
C30.2521 (3)0.23274 (19)0.13874 (17)0.0276 (4)
H3A0.26970.22740.23330.033*
H3B0.16160.31540.10840.033*
C4−0.0379 (2)0.06441 (19)0.11862 (16)0.0236 (4)
H4A−0.12830.14620.08510.028*
H4B−0.01870.06480.21340.028*
C50.1314 (2)0.08320 (19)−0.06607 (15)0.0230 (4)
H5A0.26040.0950−0.09100.028*
H5B0.04560.1656−0.10420.028*
U11U22U33U12U13U23
N10.0183 (7)0.0214 (7)0.0211 (7)−0.0005 (5)0.0031 (5)−0.0011 (6)
O10.0355 (7)0.0386 (8)0.0274 (7)−0.0108 (6)0.0049 (5)−0.0046 (6)
O20.0584 (9)0.0713 (11)0.0388 (8)−0.0414 (9)0.0174 (7)−0.0142 (8)
O30.0650 (10)0.0500 (10)0.0518 (10)0.0019 (8)0.0225 (8)0.0053 (8)
C10.0261 (9)0.0297 (9)0.0300 (10)−0.0040 (7)0.0044 (7)−0.0036 (8)
C20.0317 (10)0.0379 (11)0.0317 (10)−0.0112 (8)0.0084 (8)−0.0090 (8)
C30.0249 (9)0.0256 (9)0.0317 (9)−0.0040 (7)0.0046 (7)−0.0064 (7)
C40.0201 (8)0.0287 (9)0.0224 (8)0.0000 (7)0.0056 (6)−0.0013 (7)
C50.0214 (8)0.0279 (9)0.0202 (8)−0.0010 (7)0.0050 (6)0.0022 (7)
N1—C41.4966 (19)C2—H2A0.9700
N1—C51.4975 (19)C2—H2B0.9700
N1—C31.499 (2)C3—H3A0.9700
N1—H10.9100C3—H3B0.9700
O1—C11.267 (2)C4—C5i1.512 (2)
O2—C11.237 (2)C4—H4A0.9700
O3—H3E0.8501C4—H4B0.9700
O3—H3F0.8500C5—C4i1.512 (2)
C1—C21.523 (2)C5—H5A0.9700
C2—C31.513 (2)C5—H5B0.9700
C4—N1—C5109.42 (12)N1—C3—H3A109.2
C4—N1—C3109.84 (12)C2—C3—H3A109.2
C5—N1—C3113.65 (13)N1—C3—H3B109.2
C4—N1—H1107.9C2—C3—H3B109.2
C5—N1—H1107.9H3A—C3—H3B107.9
C3—N1—H1107.9N1—C4—C5i111.35 (13)
H3E—O3—H3F108.3N1—C4—H4A109.4
O2—C1—O1123.88 (16)C5i—C4—H4A109.4
O2—C1—C2117.96 (16)N1—C4—H4B109.4
O1—C1—C2118.09 (15)C5i—C4—H4B109.4
C3—C2—C1114.16 (15)H4A—C4—H4B108.0
C3—C2—H2A108.7N1—C5—C4i110.85 (13)
C1—C2—H2A108.7N1—C5—H5A109.5
C3—C2—H2B108.7C4i—C5—H5A109.5
C1—C2—H2B108.7N1—C5—H5B109.5
H2A—C2—H2B107.6C4i—C5—H5B109.5
N1—C3—C2112.25 (14)H5A—C5—H5B108.1
O2—C1—C2—C3−151.50 (18)C5—N1—C4—C5i57.11 (18)
O1—C1—C2—C331.5 (2)C3—N1—C4—C5i−177.48 (13)
C4—N1—C3—C2179.91 (14)C4—N1—C5—C4i−56.82 (18)
C5—N1—C3—C2−57.14 (19)C3—N1—C5—C4i−179.99 (13)
C1—C2—C3—N1−160.56 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3F···O2ii0.851.932.776 (2)177
O3—H3E···O10.852.112.964 (2)177
N1—H1···O2iii0.912.503.0577 (19)120
N1—H1···O1iii0.911.802.7011 (18)172
C4—H4B···O3iv0.972.583.419 (2)145
C4—H4B···O2iii0.972.533.137 (2)120
C5—H5A···O1v0.972.513.477 (2)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3F⋯O2i 0.851.932.776 (2)177
O3—H3E⋯O10.852.112.964 (2)177
N1—H1⋯O2ii 0.912.503.0577 (19)120
N1—H1⋯O1ii 0.911.802.7011 (18)172
C4—H4B⋯O3iii 0.972.583.419 (2)145
C4—H4B⋯O2ii 0.972.533.137 (2)120
C5—H5A⋯O1iv 0.972.513.477 (2)172

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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