| Literature DB >> 23125633 |
Shouwen Jin1, Yanfei Huang, Hao Fang, Tianyi Wang, Liangliang Ding.
Abstract
During the recrystallization of 3-[4-(2-carb-oxy-eth-yl)piperazin-1-yl]propionic acid, the carb-oxy-lic acid H atoms were transferred to the piperazine N atoms, forming the title compound, C(10)H(18)N(2)O(4)·2H(2)O, in which the zwitterion lies about an inversion center. In the crystal, bifurcated N-H⋯(O,O) hydrogen bonds connect the zwitterions into a two-dimensional framework parallel to (-102) forming R(4) (4)(30) rings. O-H⋯O hydrogen bonds involving the solvent water mol-ecules connect the two-dimensional framework into a three-dimensional network. In addition, weak C-H⋯O hydrogen bonds are observed.Entities:
Year: 2012 PMID: 23125633 PMCID: PMC3470189 DOI: 10.1107/S1600536812037312
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H18N2O4·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1525 reflections |
| θ = 3.0–28.2° | |
| µ = 0.12 mm−1 | |
| β = 101.780 (1)° | Block, colorless |
| 0.43 × 0.40 × 0.32 mm | |
| Bruker SMART CCD diffractometer | 1087 independent reflections |
| Radiation source: fine-focus sealed tube | 895 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 2951 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1087 reflections | (Δ/σ)max < 0.001 |
| 82 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.15979 (19) | 0.08898 (15) | 0.08004 (12) | 0.0204 (3) | |
| H1 | 0.2428 | 0.0121 | 0.1137 | 0.024* | |
| O1 | 0.56844 (18) | 0.37957 (15) | 0.31249 (12) | 0.0340 (4) | |
| O2 | 0.7046 (2) | 0.4517 (2) | 0.14744 (14) | 0.0551 (5) | |
| O3 | 0.8070 (2) | 0.10838 (18) | 0.40824 (15) | 0.0541 (5) | |
| H3E | 0.7405 | 0.1861 | 0.3781 | 0.065* | |
| H3F | 0.7788 | 0.0870 | 0.4818 | 0.065* | |
| C1 | 0.5838 (2) | 0.3752 (2) | 0.19346 (17) | 0.0288 (4) | |
| C2 | 0.4531 (3) | 0.2636 (2) | 0.10320 (18) | 0.0335 (5) | |
| H2A | 0.4302 | 0.3019 | 0.0143 | 0.040* | |
| H2B | 0.5256 | 0.1694 | 0.1049 | 0.040* | |
| C3 | 0.2521 (3) | 0.23274 (19) | 0.13874 (17) | 0.0276 (4) | |
| H3A | 0.2697 | 0.2274 | 0.2333 | 0.033* | |
| H3B | 0.1616 | 0.3154 | 0.1084 | 0.033* | |
| C4 | −0.0379 (2) | 0.06441 (19) | 0.11862 (16) | 0.0236 (4) | |
| H4A | −0.1283 | 0.1462 | 0.0851 | 0.028* | |
| H4B | −0.0187 | 0.0648 | 0.2134 | 0.028* | |
| C5 | 0.1314 (2) | 0.08320 (19) | −0.06607 (15) | 0.0230 (4) | |
| H5A | 0.2604 | 0.0950 | −0.0910 | 0.028* | |
| H5B | 0.0456 | 0.1656 | −0.1042 | 0.028* |
| N1 | 0.0183 (7) | 0.0214 (7) | 0.0211 (7) | −0.0005 (5) | 0.0031 (5) | −0.0011 (6) |
| O1 | 0.0355 (7) | 0.0386 (8) | 0.0274 (7) | −0.0108 (6) | 0.0049 (5) | −0.0046 (6) |
| O2 | 0.0584 (9) | 0.0713 (11) | 0.0388 (8) | −0.0414 (9) | 0.0174 (7) | −0.0142 (8) |
| O3 | 0.0650 (10) | 0.0500 (10) | 0.0518 (10) | 0.0019 (8) | 0.0225 (8) | 0.0053 (8) |
| C1 | 0.0261 (9) | 0.0297 (9) | 0.0300 (10) | −0.0040 (7) | 0.0044 (7) | −0.0036 (8) |
| C2 | 0.0317 (10) | 0.0379 (11) | 0.0317 (10) | −0.0112 (8) | 0.0084 (8) | −0.0090 (8) |
| C3 | 0.0249 (9) | 0.0256 (9) | 0.0317 (9) | −0.0040 (7) | 0.0046 (7) | −0.0064 (7) |
| C4 | 0.0201 (8) | 0.0287 (9) | 0.0224 (8) | 0.0000 (7) | 0.0056 (6) | −0.0013 (7) |
| C5 | 0.0214 (8) | 0.0279 (9) | 0.0202 (8) | −0.0010 (7) | 0.0050 (6) | 0.0022 (7) |
| N1—C4 | 1.4966 (19) | C2—H2A | 0.9700 |
| N1—C5 | 1.4975 (19) | C2—H2B | 0.9700 |
| N1—C3 | 1.499 (2) | C3—H3A | 0.9700 |
| N1—H1 | 0.9100 | C3—H3B | 0.9700 |
| O1—C1 | 1.267 (2) | C4—C5i | 1.512 (2) |
| O2—C1 | 1.237 (2) | C4—H4A | 0.9700 |
| O3—H3E | 0.8501 | C4—H4B | 0.9700 |
| O3—H3F | 0.8500 | C5—C4i | 1.512 (2) |
| C1—C2 | 1.523 (2) | C5—H5A | 0.9700 |
| C2—C3 | 1.513 (2) | C5—H5B | 0.9700 |
| C4—N1—C5 | 109.42 (12) | N1—C3—H3A | 109.2 |
| C4—N1—C3 | 109.84 (12) | C2—C3—H3A | 109.2 |
| C5—N1—C3 | 113.65 (13) | N1—C3—H3B | 109.2 |
| C4—N1—H1 | 107.9 | C2—C3—H3B | 109.2 |
| C5—N1—H1 | 107.9 | H3A—C3—H3B | 107.9 |
| C3—N1—H1 | 107.9 | N1—C4—C5i | 111.35 (13) |
| H3E—O3—H3F | 108.3 | N1—C4—H4A | 109.4 |
| O2—C1—O1 | 123.88 (16) | C5i—C4—H4A | 109.4 |
| O2—C1—C2 | 117.96 (16) | N1—C4—H4B | 109.4 |
| O1—C1—C2 | 118.09 (15) | C5i—C4—H4B | 109.4 |
| C3—C2—C1 | 114.16 (15) | H4A—C4—H4B | 108.0 |
| C3—C2—H2A | 108.7 | N1—C5—C4i | 110.85 (13) |
| C1—C2—H2A | 108.7 | N1—C5—H5A | 109.5 |
| C3—C2—H2B | 108.7 | C4i—C5—H5A | 109.5 |
| C1—C2—H2B | 108.7 | N1—C5—H5B | 109.5 |
| H2A—C2—H2B | 107.6 | C4i—C5—H5B | 109.5 |
| N1—C3—C2 | 112.25 (14) | H5A—C5—H5B | 108.1 |
| O2—C1—C2—C3 | −151.50 (18) | C5—N1—C4—C5i | 57.11 (18) |
| O1—C1—C2—C3 | 31.5 (2) | C3—N1—C4—C5i | −177.48 (13) |
| C4—N1—C3—C2 | 179.91 (14) | C4—N1—C5—C4i | −56.82 (18) |
| C5—N1—C3—C2 | −57.14 (19) | C3—N1—C5—C4i | −179.99 (13) |
| C1—C2—C3—N1 | −160.56 (15) |
| H··· | ||||
| O3—H3 | 0.85 | 1.93 | 2.776 (2) | 177 |
| O3—H3 | 0.85 | 2.11 | 2.964 (2) | 177 |
| N1—H1···O2iii | 0.91 | 2.50 | 3.0577 (19) | 120 |
| N1—H1···O1iii | 0.91 | 1.80 | 2.7011 (18) | 172 |
| C4—H4 | 0.97 | 2.58 | 3.419 (2) | 145 |
| C4—H4 | 0.97 | 2.53 | 3.137 (2) | 120 |
| C5—H5 | 0.97 | 2.51 | 3.477 (2) | 172 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3 | 0.85 | 1.93 | 2.776 (2) | 177 |
| O3—H3 | 0.85 | 2.11 | 2.964 (2) | 177 |
| N1—H1⋯O2ii | 0.91 | 2.50 | 3.0577 (19) | 120 |
| N1—H1⋯O1ii | 0.91 | 1.80 | 2.7011 (18) | 172 |
| C4—H4 | 0.97 | 2.58 | 3.419 (2) | 145 |
| C4—H4 | 0.97 | 2.53 | 3.137 (2) | 120 |
| C5—H5 | 0.97 | 2.51 | 3.477 (2) | 172 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .