Literature DB >> 23125583

Dichlorido[2-(pyridin-2-yl)-N-(pyridin-2-yl-methyl-idene)ethanamine-κ(3)N,N',N'']manganese(II) monohydrate.

Daniel Tinguiano1, Ibrahima Elhadj Thiam, Moussa Dieng, Mohamed Gaye, Pascal Retailleau.   

Abstract

In the title complex, [MnCl(2)(C(13)n class="Species">H(13)N(3))]·H(2)O, the Mn(II) atom is in a distorted square-pyramidal environment, with an Addison τ parameter of 0.037. The coordination geometry is defined by three N-atom donors from the tridentate 2-(pyridin-2-yl)-N-(pyridin-2-yl-methyl-idene)ethanamine ligand and two terminal Cl atoms. Although the H atoms of the lattice water molecule were not located, O⋯O distances of 3.103 (7) Å and O⋯Cl distances of 3.240 (3) and 3.482 (4) Å suggest that hydrogen bonding is responsible for the stabilization of the crystal packing.

Entities:  

Year:  2012        PMID: 23125583      PMCID: PMC3470139          DOI: 10.1107/S1600536812037877

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the computation of the τ parameter describing the distortion of a square-pyramidal geometry, see: Addison et al. (1984 ▶). For a related structure, see: Marzec et al. (2011 ▶).

Experimental

Crystal data

[MnCl2(C13n class="Species">H13N3)]·H2O M = 355.12 Monoclinic, a = 19.173 (3) Å b = 8.826 (1) Å c = 18.088 (2) Å β = 94.009 (2)° V = 3053.4 (7) Å3 Z = 8 Mo Kα radiation μ = 1.21 mm−1 T = 293 K 0.26 × 0.24 × 0.20 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan [SCALEPACK in CrystalClear-SM Expert (Rigaku, 2009 ▶)] T min = 0.69, T max = 0.79 13865 measured reflections 2774 independent reflections 2039 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.113 S = 1.02 2773 reflections 181 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.43 e Å−3 Data collection: CrystalClear-SM Expert (Rigaku, 2009 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and CRYSTALBUILDER (Welter, 2006 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812037877/fk2065sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037877/fk2065Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[MnCl2(C13H13N3)]·H2OF(000) = 1448
Mr = 355.12Dx = 1.545 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -C 2ycCell parameters from 4419 reflections
a = 19.173 (3) Åθ = 0.4–25.4°
b = 8.826 (1) ŵ = 1.21 mm1
c = 18.088 (2) ÅT = 293 K
β = 94.009 (2)°Block, brown
V = 3053.4 (7) Å30.26 × 0.24 × 0.20 mm
Z = 8
Nonius KappaCCD diffractometer2774 independent reflections
Radiation source: fine-focus sealed tube, Nonius KappaCCD2039 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.058
Detector resolution: 9 pixels mm-1θmax = 25.3°, θmin = 3.0°
phi and ω scansh = −22→20
Absorption correction: multi-scan [SCALEPACK in CrystalClear-SM Expert (Rigaku, 2009)]k = −10→10
Tmin = 0.69, Tmax = 0.79l = −21→20
13865 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: difference Fourier map
wR(F2) = 0.113H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0548P)2 + 3.8894P] where P = (Fo2 + 2Fc2)/3
2773 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.08475 (2)0.08118 (6)0.45536 (3)0.04179 (19)
Cl10.17062 (4)0.04014 (11)0.36281 (5)0.0530 (3)
Cl20.01984 (4)−0.15558 (10)0.44268 (5)0.0488 (3)
N10.16088 (13)0.0210 (3)0.55189 (15)0.0442 (7)
N20.11199 (14)0.3215 (3)0.48114 (17)0.0486 (7)
N30.01099 (13)0.2207 (3)0.38141 (15)0.0416 (7)
C10.18382 (19)−0.1219 (4)0.5525 (2)0.0543 (9)
H10.1642−0.18820.51690.065*
C20.2348 (2)−0.1764 (5)0.6028 (3)0.0664 (11)
H20.2492−0.27700.60180.080*
C30.2634 (2)−0.0776 (5)0.6541 (3)0.0781 (14)
H30.2984−0.10960.68880.094*
C40.2405 (2)0.0689 (5)0.6543 (3)0.0713 (12)
H40.25970.13620.68960.086*
C50.18906 (16)0.1179 (4)0.6027 (2)0.0465 (8)
C60.16231 (18)0.2766 (4)0.6053 (2)0.0556 (10)
H6A0.18880.32930.64510.067*
H6B0.11410.27270.61820.067*
C70.16495 (18)0.3695 (5)0.5364 (2)0.0565 (10)
H7A0.15800.47540.54810.068*
H7B0.21070.35930.51710.068*
C80.07445 (18)0.4208 (4)0.4444 (2)0.0515 (9)
H80.08220.52350.45290.062*
C90.01888 (16)0.3713 (4)0.38865 (19)0.0433 (8)
C10−0.02351 (19)0.4727 (4)0.3488 (2)0.0554 (10)
H10−0.01680.57650.35460.066*
C11−0.0758 (2)0.4180 (5)0.3002 (2)0.0597 (10)
H11−0.10530.48430.27310.072*
C12−0.08389 (19)0.2653 (5)0.2925 (2)0.0572 (10)
H12−0.11870.22590.25970.069*
C13−0.03961 (17)0.1700 (4)0.33402 (19)0.0476 (8)
H13−0.04550.06590.32860.057*
O1W0.08035 (19)0.2122 (4)0.76769 (19)0.0981 (11)
U11U22U33U12U13U23
Mn10.0446 (3)0.0303 (3)0.0486 (3)−0.0041 (2)−0.0107 (2)0.0010 (2)
Cl10.0494 (5)0.0530 (6)0.0562 (6)0.0021 (4)0.0006 (4)0.0027 (4)
Cl20.0553 (5)0.0368 (5)0.0541 (5)−0.0117 (4)0.0031 (4)−0.0055 (4)
N10.0427 (15)0.0465 (18)0.0425 (17)0.0020 (13)−0.0028 (12)0.0024 (14)
N20.0428 (15)0.0470 (19)0.0566 (19)−0.0089 (13)0.0068 (13)−0.0112 (15)
N30.0437 (15)0.0407 (17)0.0400 (16)0.0006 (12)−0.0002 (12)0.0004 (13)
C10.059 (2)0.045 (2)0.057 (2)0.0075 (17)−0.0052 (17)−0.0016 (18)
C20.068 (2)0.049 (3)0.080 (3)0.0153 (19)−0.008 (2)0.010 (2)
C30.072 (3)0.073 (3)0.084 (3)0.010 (2)−0.036 (2)0.011 (3)
C40.067 (3)0.073 (3)0.070 (3)−0.001 (2)−0.027 (2)−0.007 (2)
C50.0398 (18)0.050 (2)0.048 (2)−0.0010 (15)−0.0028 (15)0.0024 (18)
C60.046 (2)0.054 (2)0.066 (3)−0.0038 (16)−0.0080 (17)−0.006 (2)
C70.047 (2)0.055 (2)0.067 (3)−0.0068 (17)0.0008 (17)−0.013 (2)
C80.055 (2)0.035 (2)0.064 (3)0.0050 (15)−0.0012 (18)−0.0003 (18)
C90.0438 (18)0.0358 (19)0.050 (2)0.0047 (14)−0.0014 (15)−0.0023 (16)
C100.060 (2)0.042 (2)0.062 (3)0.0116 (17)−0.0054 (18)−0.0003 (19)
C110.057 (2)0.067 (3)0.053 (2)0.0220 (19)−0.0087 (17)0.003 (2)
C120.049 (2)0.071 (3)0.050 (2)0.0048 (18)−0.0077 (17)−0.005 (2)
C130.0491 (19)0.047 (2)0.046 (2)−0.0033 (16)−0.0023 (15)−0.0049 (17)
O1W0.115 (3)0.091 (3)0.087 (2)0.012 (2)−0.001 (2)0.023 (2)
Mn1—N22.226 (3)C4—H40.9300
Mn1—N32.245 (3)C5—C61.494 (5)
Mn1—N12.259 (3)C6—C71.495 (5)
Mn1—Cl22.4348 (10)C6—H6A0.9700
Mn1—Cl12.4554 (11)C6—H6B0.9700
N1—C11.336 (5)C7—H7A0.9700
N1—C51.341 (4)C7—H7B0.9700
N2—C81.288 (5)C8—C91.481 (5)
N2—C71.438 (4)C8—H80.9300
N3—C131.327 (4)C9—C101.378 (5)
N3—C91.343 (4)C10—C111.373 (5)
C1—C21.376 (5)C10—H100.9300
C1—H10.9300C11—C121.363 (5)
C2—C31.360 (6)C11—H110.9300
C2—H20.9300C12—C131.380 (5)
C3—C41.366 (6)C12—H120.9300
C3—H30.9300C13—H130.9300
C4—C51.379 (5)
N2—Mn1—N374.40 (11)N1—C5—C6119.8 (3)
N2—Mn1—N186.14 (11)C4—C5—C6120.3 (3)
N3—Mn1—N1159.28 (11)C5—C6—C7117.2 (3)
N2—Mn1—Cl2161.52 (8)C5—C6—H6A108.0
N3—Mn1—Cl296.78 (7)C7—C6—H6A108.0
N1—Mn1—Cl299.75 (8)C5—C6—H6B108.0
N2—Mn1—Cl197.16 (8)C7—C6—H6B108.0
N3—Mn1—Cl195.69 (7)H6A—C6—H6B107.2
N1—Mn1—Cl193.70 (7)N2—C7—C6110.8 (3)
Cl2—Mn1—Cl199.89 (4)N2—C7—H7A109.5
C1—N1—C5118.7 (3)C6—C7—H7A109.5
C1—N1—Mn1115.0 (2)N2—C7—H7B109.5
C5—N1—Mn1126.0 (2)C6—C7—H7B109.5
C8—N2—C7120.0 (3)H7A—C7—H7B108.1
C8—N2—Mn1115.2 (2)N2—C8—C9120.0 (3)
C7—N2—Mn1124.8 (3)N2—C8—H8120.0
C13—N3—C9118.0 (3)C9—C8—H8120.0
C13—N3—Mn1127.0 (2)N3—C9—C10122.2 (3)
C9—N3—Mn1115.0 (2)N3—C9—C8115.4 (3)
N1—C1—C2123.7 (4)C10—C9—C8122.3 (3)
N1—C1—H1118.2C11—C10—C9118.9 (4)
C2—C1—H1118.2C11—C10—H10120.5
C3—C2—C1117.4 (4)C9—C10—H10120.5
C3—C2—H2121.3C12—C11—C10119.1 (4)
C1—C2—H2121.3C12—C11—H11120.5
C2—C3—C4119.6 (4)C10—C11—H11120.5
C2—C3—H3120.2C11—C12—C13119.1 (4)
C4—C3—H3120.2C11—C12—H12120.5
C3—C4—C5120.7 (4)C13—C12—H12120.5
C3—C4—H4119.6N3—C13—C12122.7 (3)
C5—C4—H4119.6N3—C13—H13118.6
N1—C5—C4119.9 (4)C12—C13—H13118.6
N2—Mn1—N1—C1−160.9 (3)C2—C3—C4—C5−0.6 (8)
N3—Mn1—N1—C1179.2 (3)C1—N1—C5—C4−0.2 (5)
Cl2—Mn1—N1—C136.8 (2)Mn1—N1—C5—C4−173.2 (3)
Cl1—Mn1—N1—C1−63.9 (2)C1—N1—C5—C6−177.5 (3)
N2—Mn1—N1—C512.3 (3)Mn1—N1—C5—C69.5 (5)
N3—Mn1—N1—C5−7.6 (5)C3—C4—C5—N10.3 (7)
Cl2—Mn1—N1—C5−150.0 (3)C3—C4—C5—C6177.6 (4)
Cl1—Mn1—N1—C5109.3 (3)N1—C5—C6—C7−57.7 (4)
N3—Mn1—N2—C80.7 (2)C4—C5—C6—C7125.1 (4)
N1—Mn1—N2—C8−172.1 (3)C8—N2—C7—C6135.2 (4)
Cl2—Mn1—N2—C8−62.6 (4)Mn1—N2—C7—C6−42.0 (4)
Cl1—Mn1—N2—C894.7 (2)C5—C6—C7—N273.8 (4)
N3—Mn1—N2—C7178.0 (3)C7—N2—C8—C9−178.7 (3)
N1—Mn1—N2—C75.2 (3)Mn1—N2—C8—C9−1.2 (4)
Cl2—Mn1—N2—C7114.7 (3)C13—N3—C9—C100.0 (5)
Cl1—Mn1—N2—C7−88.0 (3)Mn1—N3—C9—C10−178.2 (3)
N2—Mn1—N3—C13−178.1 (3)C13—N3—C9—C8177.8 (3)
N1—Mn1—N3—C13−157.4 (3)Mn1—N3—C9—C8−0.4 (4)
Cl2—Mn1—N3—C13−14.7 (3)N2—C8—C9—N31.1 (5)
Cl1—Mn1—N3—C1386.0 (3)N2—C8—C9—C10178.9 (3)
N2—Mn1—N3—C9−0.1 (2)N3—C9—C10—C110.3 (5)
N1—Mn1—N3—C920.5 (4)C8—C9—C10—C11−177.3 (3)
Cl2—Mn1—N3—C9163.3 (2)C9—C10—C11—C12−0.6 (6)
Cl1—Mn1—N3—C9−96.0 (2)C10—C11—C12—C130.5 (6)
C5—N1—C1—C20.4 (6)C9—N3—C13—C12−0.1 (5)
Mn1—N1—C1—C2174.1 (3)Mn1—N3—C13—C12177.9 (3)
N1—C1—C2—C3−0.6 (7)C11—C12—C13—N3−0.2 (6)
C1—C2—C3—C40.7 (7)
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