Literature DB >> 22199497

{4,6-Bis[(E)-1-methyl-2-(pyridin-2-yl-methyl-idene)hydrazinyl]pyrimidine-κN,N',N''}dichloridomanganese(II).

Bartosz Marzec1, Mariyatra Mahimaidoss, Lei Zhang, Thomas McCabe, Wolfgang Schmitt.   

Abstract

In the title compound, [MnCl(2)(C(18)H(18)N(8))], the geometry around the n class="Chemical">Mn(II) centre is distorted square-pyramidal. In the crystal structure, mol-ecules pack via weak C-H⋯N and C-H⋯Cl inter-actions.

Entities:  

Year:  2011        PMID: 22199497      PMCID: PMC3238606          DOI: 10.1107/S1600536811043352

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the ligand, see: Schmitt et al. (2003 ▶). For the coordination chemistry of similar ligand types, see: Stadler et al. (2005 ▶, 2006 ▶). For coordination chemistry of similar complexes that contain Mn—N bonds, see: Romain et al. (2011 ▶). For a related structure containing copper(II) ions, see: Marzec et al. (2011 ▶).

Experimental

Crystal data

[MnCl2(C18H18N8)] M = 472.24 Triclinic, a = 8.8355 (12) Å b = 10.0972 (14) Å c = 12.1466 (17) Å α = 72.571 (3)° β = 77.694 (3)° γ = 75.700 (3)° V = 990.4 (2) Å3 Z = 2 Mo Kα radiation μ = 0.96 mm−1 T = 123 K 0.15 × 0.10 × 0.08 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Blessing, 1995 ▶) T min = 0.891, T max = 0.926 13578 measured reflections 4889 independent reflections 4095 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.088 S = 1.04 4889 reflections 264 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalMaker (Palmer, 2011 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811043352/su2330sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043352/su2330Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811043352/su2330Isup3.mol Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[MnCl2(C18H18N8)]Z = 2
Mr = 472.24F(000) = 482
Triclinic, P1Dx = 1.583 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8355 (12) ÅCell parameters from 209 reflections
b = 10.0972 (14) Åθ = 1.8–28.4°
c = 12.1466 (17) ŵ = 0.96 mm1
α = 72.571 (3)°T = 123 K
β = 77.694 (3)°Block, orange
γ = 75.700 (3)°0.15 × 0.10 × 0.08 mm
V = 990.4 (2) Å3
Bruker SMART CCD diffractometer4889 independent reflections
Radiation source: fine-focus sealed tube4095 reflections with I > 2σ(I)
graphiteRint = 0.029
ω and φ scansθmax = 28.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Blessing, 1995)h = −11→11
Tmin = 0.891, Tmax = 0.926k = −13→13
13578 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0408P)2 + 0.5107P] where P = (Fo2 + 2Fc2)/3
4889 reflections(Δ/σ)max = 0.001
264 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.67993 (3)0.16794 (3)0.82771 (3)0.01792 (9)
Cl30.79147 (6)0.23004 (5)0.96172 (5)0.02639 (12)
Cl60.83681 (6)0.18893 (6)0.64375 (4)0.02952 (13)
N10.01708 (19)0.67410 (17)0.66222 (14)0.0208 (3)
N20.14098 (19)0.69997 (17)0.69778 (15)0.0212 (3)
N3−0.3287 (2)0.85135 (18)0.53910 (16)0.0256 (4)
N40.37974 (19)0.59915 (17)0.76727 (15)0.0213 (3)
N50.47733 (18)0.34990 (17)0.80430 (14)0.0191 (3)
N60.32711 (18)0.19442 (17)0.79741 (15)0.0201 (3)
N70.45792 (18)0.09592 (16)0.82524 (14)0.0183 (3)
N80.72286 (18)−0.07073 (17)0.88859 (14)0.0193 (3)
C1−0.2119 (2)0.7419 (2)0.57423 (17)0.0213 (4)
C2−0.4426 (2)0.8238 (2)0.49708 (19)0.0282 (5)
H2−0.52680.89970.47310.034*
C3−0.4455 (3)0.6926 (2)0.48639 (19)0.0291 (5)
H3−0.52880.67890.45530.035*
C4−0.3236 (3)0.5808 (2)0.52218 (19)0.0294 (5)
H4−0.32170.48880.51600.035*
C5−0.2060 (2)0.6057 (2)0.56669 (18)0.0257 (4)
H5−0.12150.53090.59210.031*
C6−0.0873 (2)0.7771 (2)0.61700 (17)0.0219 (4)
H6−0.08440.87240.61130.026*
C70.1690 (2)0.8430 (2)0.6747 (2)0.0269 (4)
H7A0.08170.89810.71720.040*
H7B0.17560.88850.59080.040*
H7C0.26830.83850.70060.040*
C80.2476 (2)0.5803 (2)0.74022 (16)0.0192 (4)
C90.2191 (2)0.4463 (2)0.75266 (17)0.0202 (4)
H90.12170.43390.73980.024*
C100.3397 (2)0.3324 (2)0.78463 (16)0.0178 (4)
C110.4861 (2)0.4824 (2)0.79677 (18)0.0218 (4)
H110.58050.49430.81490.026*
C120.1896 (2)0.1539 (2)0.7783 (2)0.0257 (4)
H12A0.16240.07390.84280.039*
H12B0.21360.12630.70470.039*
H12C0.10010.23410.77440.039*
C130.4659 (2)−0.0363 (2)0.83818 (17)0.0211 (4)
H130.3820−0.07050.82530.025*
C140.6114 (2)−0.1315 (2)0.87384 (16)0.0189 (4)
C150.6297 (2)−0.2762 (2)0.89248 (18)0.0236 (4)
H150.5485−0.31550.88160.028*
C160.7687 (2)−0.3630 (2)0.92733 (18)0.0252 (4)
H160.7850−0.46270.94000.030*
C170.8830 (2)−0.3016 (2)0.94323 (18)0.0243 (4)
H170.9791−0.35850.96750.029*
C180.8557 (2)−0.1558 (2)0.92326 (17)0.0217 (4)
H180.9348−0.11450.93470.026*
U11U22U33U12U13U23
Mn10.01333 (14)0.01712 (15)0.02342 (16)−0.00139 (10)−0.00637 (11)−0.00423 (11)
Cl30.0216 (2)0.0294 (3)0.0326 (3)−0.00431 (19)−0.0116 (2)−0.0098 (2)
Cl60.0247 (3)0.0315 (3)0.0265 (3)−0.0013 (2)−0.0011 (2)−0.0043 (2)
N10.0168 (8)0.0219 (8)0.0227 (8)−0.0002 (6)−0.0064 (6)−0.0049 (7)
N20.0178 (8)0.0173 (8)0.0283 (9)0.0002 (6)−0.0094 (7)−0.0047 (7)
N30.0191 (8)0.0237 (9)0.0309 (9)0.0026 (7)−0.0094 (7)−0.0042 (7)
N40.0189 (8)0.0192 (8)0.0273 (9)−0.0003 (6)−0.0082 (7)−0.0075 (7)
N50.0149 (7)0.0200 (8)0.0234 (8)−0.0008 (6)−0.0065 (6)−0.0068 (6)
N60.0130 (7)0.0175 (8)0.0294 (9)−0.0005 (6)−0.0083 (6)−0.0041 (7)
N70.0135 (7)0.0185 (8)0.0211 (8)0.0012 (6)−0.0057 (6)−0.0039 (6)
N80.0175 (8)0.0189 (8)0.0213 (8)−0.0021 (6)−0.0062 (6)−0.0038 (6)
C10.0180 (9)0.0223 (9)0.0205 (9)0.0003 (7)−0.0052 (7)−0.0030 (8)
C20.0185 (10)0.0324 (11)0.0302 (11)−0.0001 (8)−0.0087 (8)−0.0036 (9)
C30.0233 (10)0.0387 (12)0.0266 (11)−0.0096 (9)−0.0074 (8)−0.0050 (9)
C40.0326 (12)0.0275 (11)0.0287 (11)−0.0073 (9)−0.0070 (9)−0.0055 (9)
C50.0245 (10)0.0232 (10)0.0265 (10)0.0001 (8)−0.0075 (8)−0.0034 (8)
C60.0199 (9)0.0190 (9)0.0244 (10)0.0000 (7)−0.0051 (8)−0.0039 (8)
C70.0236 (10)0.0183 (9)0.0391 (12)−0.0005 (8)−0.0115 (9)−0.0061 (9)
C80.0170 (9)0.0216 (9)0.0174 (9)−0.0001 (7)−0.0034 (7)−0.0052 (7)
C90.0143 (9)0.0209 (9)0.0247 (10)0.0001 (7)−0.0073 (7)−0.0048 (8)
C100.0153 (8)0.0193 (9)0.0191 (9)−0.0020 (7)−0.0034 (7)−0.0060 (7)
C110.0175 (9)0.0225 (10)0.0275 (10)−0.0017 (7)−0.0082 (8)−0.0079 (8)
C120.0159 (9)0.0231 (10)0.0401 (12)−0.0034 (7)−0.0101 (8)−0.0075 (9)
C130.0176 (9)0.0210 (9)0.0254 (10)−0.0031 (7)−0.0071 (8)−0.0048 (8)
C140.0164 (9)0.0189 (9)0.0202 (9)−0.0023 (7)−0.0041 (7)−0.0036 (7)
C150.0225 (10)0.0205 (9)0.0293 (11)−0.0035 (8)−0.0082 (8)−0.0064 (8)
C160.0282 (10)0.0168 (9)0.0291 (11)0.0008 (8)−0.0076 (9)−0.0055 (8)
C170.0209 (10)0.0245 (10)0.0242 (10)0.0039 (8)−0.0087 (8)−0.0044 (8)
C180.0176 (9)0.0236 (10)0.0238 (10)−0.0025 (7)−0.0072 (8)−0.0045 (8)
Mn1—N52.2227 (16)C3—H30.9500
Mn1—N82.2580 (16)C4—C51.373 (3)
Mn1—N72.2628 (16)C4—H40.9500
Mn1—Cl62.3453 (7)C5—H50.9500
Mn1—Cl32.3695 (6)C6—H60.9500
N1—C61.279 (2)C7—H7A0.9800
N1—N21.365 (2)C7—H7B0.9800
N2—C81.373 (2)C7—H7C0.9800
N2—C71.459 (3)C8—C91.396 (3)
N3—C21.339 (3)C9—C101.382 (2)
N3—C11.345 (2)C9—H90.9500
N4—C111.320 (2)C11—H110.9500
N4—C81.348 (2)C12—H12A0.9800
N5—C111.334 (2)C12—H12B0.9800
N5—C101.350 (2)C12—H12C0.9800
N6—N71.355 (2)C13—C141.463 (3)
N6—C101.385 (2)C13—H130.9500
N6—C121.457 (2)C14—C151.384 (3)
N7—C131.282 (2)C15—C161.387 (3)
N8—C181.338 (2)C15—H150.9500
N8—C141.348 (2)C16—C171.380 (3)
C1—C51.394 (3)C16—H160.9500
C1—C61.468 (3)C17—C181.385 (3)
C2—C31.376 (3)C17—H170.9500
C2—H20.9500C18—H180.9500
C3—C41.389 (3)
N5—Mn1—N8138.73 (6)N1—C6—H6121.4
N5—Mn1—N769.14 (6)C1—C6—H6121.4
N8—Mn1—N771.34 (6)N2—C7—H7A109.5
N5—Mn1—Cl6105.58 (5)N2—C7—H7B109.5
N8—Mn1—Cl698.09 (4)H7A—C7—H7B109.5
N7—Mn1—Cl6109.23 (4)N2—C7—H7C109.5
N5—Mn1—Cl398.11 (4)H7A—C7—H7C109.5
N8—Mn1—Cl3103.08 (4)H7B—C7—H7C109.5
N7—Mn1—Cl3137.70 (4)N4—C8—N2117.01 (17)
Cl6—Mn1—Cl3113.06 (2)N4—C8—C9122.41 (17)
C6—N1—N2120.08 (17)N2—C8—C9120.58 (17)
N1—N2—C8114.05 (15)C10—C9—C8116.66 (17)
N1—N2—C7121.98 (15)C10—C9—H9121.7
C8—N2—C7123.26 (16)C8—C9—H9121.7
C2—N3—C1116.94 (18)N5—C10—C9121.65 (17)
C11—N4—C8115.07 (17)N5—C10—N6116.17 (16)
C11—N5—C10115.84 (16)C9—C10—N6122.17 (17)
C11—N5—Mn1123.94 (12)N4—C11—N5128.05 (18)
C10—N5—Mn1119.88 (12)N4—C11—H11116.0
N7—N6—C10114.64 (15)N5—C11—H11116.0
N7—N6—C12120.81 (15)N6—C12—H12A109.5
C10—N6—C12124.50 (15)N6—C12—H12B109.5
C13—N7—N6122.20 (16)H12A—C12—H12B109.5
C13—N7—Mn1118.24 (12)N6—C12—H12C109.5
N6—N7—Mn1119.14 (12)H12A—C12—H12C109.5
C18—N8—C14117.69 (16)H12B—C12—H12C109.5
C18—N8—Mn1125.94 (13)N7—C13—C14116.34 (17)
C14—N8—Mn1115.79 (12)N7—C13—H13121.8
N3—C1—C5122.57 (18)C14—C13—H13121.8
N3—C1—C6115.26 (17)N8—C14—C15122.81 (17)
C5—C1—C6122.13 (17)N8—C14—C13116.59 (16)
N3—C2—C3124.18 (19)C15—C14—C13120.59 (17)
N3—C2—H2117.9C14—C15—C16118.86 (18)
C3—C2—H2117.9C14—C15—H15120.6
C2—C3—C4118.28 (19)C16—C15—H15120.6
C2—C3—H3120.9C17—C16—C15118.62 (18)
C4—C3—H3120.9C17—C16—H16120.7
C5—C4—C3118.8 (2)C15—C16—H16120.7
C5—C4—H4120.6C16—C17—C18119.14 (18)
C3—C4—H4120.6C16—C17—H17120.4
C4—C5—C1119.22 (19)C18—C17—H17120.4
C4—C5—H5120.4N8—C18—C17122.87 (18)
C1—C5—H5120.4N8—C18—H18118.6
N1—C6—C1117.14 (18)C17—C18—H18118.6
C6—N1—N2—C8−177.44 (18)N3—C1—C6—N1173.05 (18)
C6—N1—N2—C7−6.8 (3)C5—C1—C6—N1−9.2 (3)
N8—Mn1—N5—C11160.34 (14)C11—N4—C8—N2−173.62 (17)
N7—Mn1—N5—C11177.93 (17)C11—N4—C8—C95.6 (3)
Cl6—Mn1—N5—C11−77.03 (16)N1—N2—C8—N4174.36 (16)
Cl3—Mn1—N5—C1139.75 (16)C7—N2—C8—N43.8 (3)
N8—Mn1—N5—C10−26.59 (19)N1—N2—C8—C9−4.8 (3)
N7—Mn1—N5—C10−9.01 (13)C7—N2—C8—C9−175.38 (19)
Cl6—Mn1—N5—C1096.04 (14)N4—C8—C9—C10−5.5 (3)
Cl3—Mn1—N5—C10−147.19 (14)N2—C8—C9—C10173.61 (17)
C10—N6—N7—C13−178.82 (18)C11—N5—C10—C93.3 (3)
C12—N6—N7—C13−1.4 (3)Mn1—N5—C10—C9−170.32 (14)
C10—N6—N7—Mn1−6.4 (2)C11—N5—C10—N6−177.21 (17)
C12—N6—N7—Mn1171.03 (14)Mn1—N5—C10—N69.2 (2)
N5—Mn1—N7—C13−179.21 (16)C8—C9—C10—N50.8 (3)
N8—Mn1—N7—C13−11.35 (14)C8—C9—C10—N6−178.64 (17)
Cl6—Mn1—N7—C1380.91 (15)N7—N6—C10—N5−1.6 (2)
Cl3—Mn1—N7—C13−100.42 (15)C12—N6—C10—N5−178.96 (18)
N5—Mn1—N7—N68.07 (13)N7—N6—C10—C9177.86 (17)
N8—Mn1—N7—N6175.93 (15)C12—N6—C10—C90.5 (3)
Cl6—Mn1—N7—N6−91.81 (13)C8—N4—C11—N5−0.9 (3)
Cl3—Mn1—N7—N686.86 (14)C10—N5—C11—N4−3.4 (3)
N5—Mn1—N8—C18−161.13 (14)Mn1—N5—C11—N4169.90 (16)
N7—Mn1—N8—C18−178.46 (17)N6—N7—C13—C14−177.09 (16)
Cl6—Mn1—N8—C1873.90 (16)Mn1—N7—C13—C1410.4 (2)
Cl3—Mn1—N8—C18−42.16 (16)C18—N8—C14—C15−0.3 (3)
N5—Mn1—N8—C1427.89 (18)Mn1—N8—C14—C15171.45 (15)
N7—Mn1—N8—C1410.56 (13)C18—N8—C14—C13178.80 (17)
Cl6—Mn1—N8—C14−97.09 (13)Mn1—N8—C14—C13−9.4 (2)
Cl3—Mn1—N8—C14146.86 (13)N7—C13—C14—N8−0.5 (3)
C2—N3—C1—C50.8 (3)N7—C13—C14—C15178.61 (19)
C2—N3—C1—C6178.55 (18)N8—C14—C15—C16−0.3 (3)
C1—N3—C2—C3−1.0 (3)C13—C14—C15—C16−179.37 (19)
N3—C2—C3—C40.6 (3)C14—C15—C16—C170.6 (3)
C2—C3—C4—C50.1 (3)C15—C16—C17—C18−0.4 (3)
C3—C4—C5—C1−0.2 (3)C14—N8—C18—C170.6 (3)
N3—C1—C5—C4−0.2 (3)Mn1—N8—C18—C17−170.26 (15)
C6—C1—C5—C4−177.8 (2)C16—C17—C18—N8−0.2 (3)
N2—N1—C6—C1176.38 (17)
D—H···AD—HH···AD···AD—H···A
C2—H2···N3i0.952.503.358 (3)151
C18—H18···Cl3ii0.952.803.508 (2)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯N3i0.952.503.358 (3)151
C18—H18⋯Cl3ii0.952.803.508 (2)133

Symmetry codes: (i) ; (ii) .

  6 in total

1.  Formation of RACK- and grid-type metallosupramolecular architectures and generation of molecular motion by reversible uncoiling of helical ligand strands.

Authors:  Adrian-Mihail Stadler; Nathalie Kyritsakas; Roland Graff; Jean-Marie Lehn
Journal:  Chemistry       Date:  2006-06-02       Impact factor: 5.236

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Multireversible redox processes in pentanuclear bis(triple-helical) manganese complexes featuring an oxo-centered triangular {Mn(II)2Mn(III)(μ3-O)}5+ or {Mn(II)Mn(III)2(μ3-O)}6+ core wrapped by two {Mn(II)2(bpp)3}-.

Authors:  Sophie Romain; Jordi Rich; Cristina Sens; Thibaut Stoll; Jordi Benet-Buchholz; Antoni Llobet; Montserrat Rodriguez; Isabel Romero; Rodolphe Clérac; Corine Mathonière; Carole Duboc; Alain Deronzier; Marie-Noëlle Collomb
Journal:  Inorg Chem       Date:  2011-08-03       Impact factor: 5.165

4.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

5.  Synthesis, structural features, absorption spectra, redox behaviour and luminescence properties of ruthenium(ii) rack-type dinuclear complexes with ditopic, hydrazone-based ligands.

Authors:  Adrian-Mihail Stadler; Fausto Puntoriero; Sebastiano Campagna; Nathalie Kyritsakas; Richard Welter; Jean-Marie Lehn
Journal:  Chemistry       Date:  2005-06-20       Impact factor: 5.236

6.  {4,6-Bis[(E)-1-methyl-2-(pyridin-2-yl-methyl-idene-κN)hydrazinyl-κN]pyrimidine-κN}dichloridocopper(II) methanol disolvate monohydrate.

Authors:  Bartosz Marzec; M Baby Mariyatra; Thomas McCabe; Wolfgang Schmitt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09
  6 in total
  1 in total

1.  Dichlorido[2-(pyridin-2-yl)-N-(pyridin-2-yl-methyl-idene)ethanamine-κ(3)N,N',N'']manganese(II) monohydrate.

Authors:  Daniel Tinguiano; Ibrahima Elhadj Thiam; Moussa Dieng; Mohamed Gaye; Pascal Retailleau
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08
  1 in total

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