Literature DB >> 23125576

Guanidinium dioxidobis(picolinato-κ(2)N,O)(picolinato-κO)uranate(VI).

Vitalii I Mishkevich1, Mikhail S Grigoriev, Alexandre M Fedosseev, Philippe Moisy.   

Abstract

In the title compound, (CH(6)N(3))[U(C(6)H(4)NO(2))(3)O(2)], the uranyl group is coordinated by two O and two N atoms from two chelating picolinate ligands, and one O atom from a third picolinate ligand. The coordination environment of the U(VI) atom (N(2)O(5)) is distorted penta-gonal-bipyramidal. In the crystal, all amino groups are involved in the formation of N-H⋯O and N-H⋯N hydrogen bonds, which link cations and anions into layers parallel to the ac plane.

Entities:  

Year:  2012        PMID: 23125576      PMCID: PMC3470132          DOI: 10.1107/S1600536812035465

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the disordered crystal structure of a related complex without guanidinium in which the uranyl ion is chelated by two picolinato ligands and coordinated via the O atom of a picolinic acid mol­ecule, see: Grechishnikova et al. (2007 ▶).

Experimental

Crystal data

(CH6N3)[U(C6H4NO2)3O2] M = 696.42 Orthorhombic, a = 16.3842 (4) Å b = 13.1678 (3) Å c = 21.2743 (4) Å V = 4589.80 (18) Å3 Z = 8 Mo Kα radiation μ = 7.13 mm−1 T = 293 K 0.18 × 0.06 × 0.04 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.360, T max = 0.764 77357 measured reflections 6604 independent reflections 3818 reflections with I > 2σ(I) R int = 0.093

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.075 S = 1.01 6604 reflections 307 parameters H-atom parameters constrained Δρmax = 1.07 e Å−3 Δρmin = −0.71 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812035465/cv5297sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035465/cv5297Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(CH6N3)[U(C6H4NO2)3O2]F(000) = 2640
Mr = 696.42Dx = 2.016 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 9491 reflections
a = 16.3842 (4) Åθ = 6.2–24.9°
b = 13.1678 (3) ŵ = 7.13 mm1
c = 21.2743 (4) ÅT = 293 K
V = 4589.80 (18) Å3Fragment, light-yellow
Z = 80.18 × 0.06 × 0.04 mm
Bruker Kappa APEXII CCD diffractometer6604 independent reflections
Radiation source: fine-focus sealed tube3818 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.093
ω and φ scansθmax = 30.0°, θmin = 4.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)h = −23→23
Tmin = 0.360, Tmax = 0.764k = −18→18
77357 measured reflectionsl = −27→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0317P)2] where P = (Fo2 + 2Fc2)/3
6604 reflections(Δ/σ)max = 0.001
307 parametersΔρmax = 1.07 e Å3
0 restraintsΔρmin = −0.71 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
U10.418415 (10)0.592900 (13)0.227356 (7)0.03351 (6)
O10.4611 (2)0.7128 (3)0.24392 (16)0.0495 (9)
O20.3762 (2)0.4717 (3)0.21274 (15)0.0496 (9)
O30.3164 (2)0.6513 (3)0.15747 (14)0.0466 (9)
O40.1888 (2)0.6949 (3)0.13249 (18)0.0660 (12)
O50.4135 (2)0.5504 (3)0.33518 (15)0.0560 (10)
O60.4548 (3)0.4710 (4)0.42111 (17)0.0715 (13)
O70.4928 (2)0.5876 (3)0.13743 (17)0.0580 (10)
O80.6048 (2)0.5233 (4)0.09453 (17)0.0659 (12)
N10.2885 (2)0.6762 (3)0.27861 (17)0.0365 (9)
N20.5468 (2)0.5021 (3)0.27319 (18)0.0381 (9)
N30.5676 (3)0.6053 (3)−0.0183 (2)0.0532 (12)
C110.2433 (3)0.6807 (3)0.1704 (2)0.0399 (12)
C120.2272 (3)0.7013 (3)0.2395 (2)0.0366 (11)
C130.1551 (3)0.7450 (4)0.2593 (3)0.0471 (13)
H13A0.11380.75960.23070.057*
C140.1456 (4)0.7664 (4)0.3215 (3)0.0584 (15)
H14A0.09760.79580.33600.070*
C150.2082 (4)0.7438 (5)0.3626 (3)0.0621 (16)
H15A0.20320.75850.40520.075*
C160.2786 (3)0.6989 (4)0.3393 (2)0.0479 (13)
H16A0.32070.68390.36720.057*
C210.4669 (3)0.4998 (4)0.3676 (2)0.0474 (13)
C220.5445 (3)0.4778 (4)0.3340 (2)0.0391 (11)
C230.6114 (4)0.4354 (4)0.3651 (3)0.0503 (14)
H23A0.60840.41920.40760.060*
C240.6818 (3)0.4182 (4)0.3318 (3)0.0548 (15)
H24A0.72790.39290.35190.066*
C250.6833 (3)0.4389 (4)0.2682 (3)0.0493 (13)
H25A0.72950.42510.24430.059*
C260.6142 (3)0.4808 (4)0.2410 (3)0.0459 (13)
H26A0.61510.49460.19810.055*
C310.5434 (3)0.5758 (4)0.0917 (2)0.0445 (13)
C320.5242 (3)0.6342 (4)0.0327 (2)0.0389 (11)
C330.4686 (4)0.7118 (5)0.0309 (3)0.0601 (16)
H33A0.43920.72870.06680.072*
C340.4562 (4)0.7646 (5)−0.0237 (3)0.0735 (19)
H34A0.42000.8188−0.02500.088*
C350.4985 (4)0.7357 (5)−0.0765 (3)0.0681 (18)
H35A0.49080.7688−0.11460.082*
C360.5523 (4)0.6569 (5)−0.0712 (2)0.0592 (16)
H36A0.58050.6376−0.10720.071*
N110.8357 (3)0.4011 (4)−0.0134 (2)0.0632 (14)
H11A0.83570.3657−0.04740.076*
H11B0.87910.40440.00930.076*
N120.7021 (3)0.4469 (4)−0.0293 (2)0.0658 (14)
H12A0.70030.4122−0.06350.079*
H12B0.65960.4796−0.01690.079*
N130.7708 (3)0.5039 (4)0.0568 (2)0.0719 (16)
H13B0.72780.53620.06880.086*
H13C0.81460.50660.07900.086*
C10.7694 (3)0.4500 (4)0.0039 (3)0.0514 (14)
U11U22U33U12U13U23
U10.02556 (9)0.04300 (10)0.03197 (8)0.00403 (9)0.00182 (8)0.00058 (8)
O10.039 (2)0.054 (2)0.056 (2)0.0013 (19)0.0014 (16)−0.0038 (18)
O20.042 (2)0.047 (2)0.059 (2)0.0028 (18)−0.0024 (17)0.0004 (17)
O30.038 (2)0.065 (2)0.0370 (18)0.0144 (19)−0.0010 (15)−0.0033 (16)
O40.055 (3)0.082 (3)0.060 (2)0.029 (2)−0.028 (2)−0.015 (2)
O50.045 (2)0.082 (3)0.0405 (19)0.016 (2)0.0066 (17)0.0084 (18)
O60.067 (3)0.104 (4)0.043 (2)0.015 (3)0.008 (2)0.026 (2)
O70.053 (2)0.077 (3)0.0440 (19)0.014 (2)0.0162 (18)0.0023 (19)
O80.050 (3)0.096 (3)0.051 (2)0.029 (2)0.0112 (19)0.008 (2)
N10.028 (2)0.041 (2)0.040 (2)0.0035 (17)0.0023 (18)0.0013 (18)
N20.029 (2)0.044 (2)0.042 (2)0.0005 (18)0.000 (2)0.0056 (19)
N30.054 (3)0.060 (3)0.045 (2)−0.007 (2)0.012 (2)−0.003 (2)
C110.038 (3)0.036 (3)0.046 (3)0.001 (2)−0.008 (2)−0.005 (2)
C120.030 (3)0.028 (2)0.051 (3)0.000 (2)0.002 (2)0.002 (2)
C130.032 (3)0.037 (3)0.072 (4)0.003 (2)−0.003 (3)0.001 (2)
C140.049 (4)0.048 (3)0.079 (4)0.012 (3)0.024 (3)0.000 (3)
C150.069 (4)0.064 (4)0.054 (3)0.016 (3)0.018 (3)0.001 (3)
C160.048 (3)0.058 (4)0.038 (3)0.008 (3)0.004 (2)−0.004 (2)
C210.048 (3)0.056 (4)0.038 (3)0.003 (3)0.001 (2)0.002 (2)
C220.036 (3)0.038 (3)0.043 (3)−0.001 (2)−0.005 (2)0.001 (2)
C230.055 (4)0.045 (3)0.051 (3)0.006 (3)−0.008 (3)0.006 (2)
C240.038 (3)0.047 (3)0.079 (4)0.009 (3)−0.013 (3)0.000 (3)
C250.033 (3)0.045 (3)0.070 (4)0.006 (2)0.005 (3)0.001 (3)
C260.034 (3)0.048 (3)0.055 (3)0.006 (3)0.003 (2)0.002 (2)
C310.042 (3)0.052 (4)0.040 (3)−0.004 (3)0.009 (2)−0.002 (2)
C320.035 (3)0.045 (3)0.036 (3)−0.005 (2)0.005 (2)−0.004 (2)
C330.062 (4)0.069 (4)0.049 (3)0.015 (3)0.011 (3)0.001 (3)
C340.075 (5)0.071 (5)0.074 (4)0.025 (4)0.006 (4)0.006 (4)
C350.081 (5)0.073 (5)0.050 (4)0.000 (4)−0.002 (3)0.012 (3)
C360.067 (4)0.070 (4)0.041 (3)−0.014 (4)0.015 (3)0.003 (3)
N110.048 (3)0.089 (4)0.053 (3)0.017 (3)0.000 (2)−0.012 (3)
N120.045 (3)0.093 (4)0.059 (3)0.012 (3)−0.007 (2)−0.030 (3)
N130.039 (3)0.111 (4)0.065 (3)0.018 (3)−0.004 (2)−0.033 (3)
C10.045 (4)0.062 (4)0.048 (3)−0.001 (3)0.003 (3)−0.005 (3)
U1—O11.762 (4)C21—C221.486 (7)
U1—O21.766 (4)C22—C231.397 (7)
U1—O32.366 (3)C23—C241.371 (8)
U1—O52.362 (3)C23—H23A0.9300
U1—O72.269 (3)C24—C251.381 (8)
U1—N12.631 (4)C24—H24A0.9300
U1—N22.609 (4)C25—C261.386 (7)
O3—C111.288 (5)C25—H25A0.9300
O4—C111.218 (5)C26—H26A0.9300
O5—C211.298 (6)C31—C321.506 (7)
O6—C211.217 (6)C32—C331.371 (7)
O7—C311.287 (6)C33—C341.369 (8)
O8—C311.221 (6)C33—H33A0.9300
N1—C161.335 (6)C34—C351.372 (9)
N1—C121.345 (6)C34—H34A0.9300
N2—C261.330 (6)C35—C361.365 (9)
N2—C221.334 (6)C35—H35A0.9300
N3—C361.340 (7)C36—H36A0.9300
N3—C321.351 (6)N11—C11.316 (7)
C11—C121.518 (7)N11—H11A0.8600
C12—C131.379 (7)N11—H11B0.8600
C13—C141.360 (8)N12—C11.310 (7)
C13—H13A0.9300N12—H12A0.8600
C14—C151.381 (8)N12—H12B0.8600
C14—H14A0.9300N13—C11.331 (7)
C15—C161.389 (7)N13—H13B0.8600
C15—H15A0.9300N13—H13C0.8600
C16—H16A0.9300
O1—U1—O2178.53 (16)O6—C21—O5123.2 (5)
O1—U1—O789.03 (15)O6—C21—C22121.9 (5)
O2—U1—O791.94 (15)O5—C21—C22114.9 (4)
O1—U1—O591.81 (15)N2—C22—C23122.1 (5)
O2—U1—O586.77 (15)N2—C22—C21116.4 (4)
O7—U1—O5146.05 (13)C23—C22—C21121.5 (5)
O1—U1—O396.59 (15)C24—C23—C22118.8 (5)
O2—U1—O384.64 (14)C24—C23—H23A120.6
O7—U1—O381.95 (12)C22—C23—H23A120.6
O5—U1—O3131.53 (12)C23—C24—C25119.3 (5)
O1—U1—N290.92 (14)C23—C24—H24A120.4
O2—U1—N288.11 (14)C25—C24—H24A120.4
O7—U1—N282.41 (13)C24—C25—C26118.2 (5)
O5—U1—N263.64 (12)C24—C25—H25A120.9
O3—U1—N2162.51 (12)C26—C25—H25A120.9
O1—U1—N182.23 (14)N2—C26—C25123.1 (5)
O2—U1—N197.65 (14)N2—C26—H26A118.4
O7—U1—N1142.81 (12)C25—C26—H26A118.4
O5—U1—N170.66 (12)O8—C31—O7124.1 (5)
O3—U1—N163.45 (12)O8—C31—C32120.1 (5)
N2—U1—N1133.52 (12)O7—C31—C32115.7 (5)
C11—O3—U1128.3 (3)N3—C32—C33122.6 (5)
C21—O5—U1127.9 (3)N3—C32—C31114.6 (5)
C31—O7—U1170.5 (4)C33—C32—C31122.9 (5)
C16—N1—C12116.9 (4)C34—C33—C32120.0 (5)
C16—N1—U1126.3 (3)C34—C33—H33A120.0
C12—N1—U1116.8 (3)C32—C33—H33A120.0
C26—N2—C22118.2 (4)C33—C34—C35118.6 (6)
C26—N2—U1125.0 (3)C33—C34—H34A120.7
C22—N2—U1116.7 (3)C35—C34—H34A120.7
C36—N3—C32115.6 (5)C36—C35—C34117.9 (6)
O4—C11—O3125.8 (5)C36—C35—H35A121.0
O4—C11—C12119.1 (5)C34—C35—H35A121.0
O3—C11—C12115.0 (4)N3—C36—C35125.2 (5)
N1—C12—C13123.6 (5)N3—C36—H36A117.4
N1—C12—C11115.1 (4)C35—C36—H36A117.4
C13—C12—C11121.3 (5)C1—N11—H11A120.0
C14—C13—C12118.8 (5)C1—N11—H11B120.0
C14—C13—H13A120.6H11A—N11—H11B120.0
C12—C13—H13A120.6C1—N12—H12A120.0
C13—C14—C15119.1 (5)C1—N12—H12B120.0
C13—C14—H14A120.4H12A—N12—H12B120.0
C15—C14—H14A120.4C1—N13—H13B120.0
C14—C15—C16118.8 (5)C1—N13—H13C120.0
C14—C15—H15A120.6H13B—N13—H13C120.0
C16—C15—H15A120.6N12—C1—N11121.9 (5)
N1—C16—C15122.8 (5)N12—C1—N13119.1 (5)
N1—C16—H16A118.6N11—C1—N13118.9 (5)
C15—C16—H16A118.6
D—H···AD—HH···AD···AD—H···A
N11—H11A···O4i0.862.022.859 (6)166
N11—H11B···O6ii0.862.122.918 (6)154
N12—H12A···O3i0.862.183.033 (6)169
N12—H12B···N30.862.243.042 (7)156
N13—H13B···O80.862.102.847 (6)146
N13—H13C···O6ii0.862.353.083 (6)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N11—H11A⋯O4i 0.862.022.859 (6)166
N11—H11B⋯O6ii 0.862.122.918 (6)154
N12—H12A⋯O3i 0.862.183.033 (6)169
N12—H12B⋯N30.862.243.042 (7)156
N13—H13B⋯O80.862.102.847 (6)146
N13—H13C⋯O6ii 0.862.353.083 (6)144

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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