Literature DB >> 23118449

Complete genome sequence of the novel Escherichia coli phage phAPEC8.

J Tsonos1, E M Adriaenssens, J Klumpp, J-P Hernalsteens, R Lavigne, H De Greve.   

Abstract

Bacteriophage phAPEC8 is an Escherichia coli-infecting myovirus, isolated on an avian pathogenic Escherichia coli (APEC) strain. APEC strains cause colibacillosis in poultry, resulting in high mortality levels and important economic losses. Genomic analysis of the 147,737-bp double-stranded DNA phAPEC8 genome revealed that 53% of the 269 encoded proteins are unique to this phage. Its closest relatives include the Salmonella phage PVP-SE1 and the coliphage rv5, with 19% and 18% similar proteins, respectively. As such, phAPEC8 represents a novel, phylogenetically distinct clade within the Myoviridae, with molecular properties suitable for phage therapy applications.

Entities:  

Mesh:

Year:  2012        PMID: 23118449      PMCID: PMC3497662          DOI: 10.1128/JVI.02374-12

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  15 in total

1.  Prediction of rho-independent transcriptional terminators in Escherichia coli.

Authors:  E A Lesnik; R Sampath; H B Levene; T J Henderson; J A McNeil; D J Ecker
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

2.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

3.  Identification of genes required for avian Escherichia coli septicemia by signature-tagged mutagenesis.

Authors:  Ganwu Li; Claudia Laturnus; Christa Ewers; Lothar H Wieler
Journal:  Infect Immun       Date:  2005-05       Impact factor: 3.441

Review 4.  Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.

Authors:  Tim T Binnewies; Yair Motro; Peter F Hallin; Ole Lund; David Dunn; Tom La; David J Hampson; Matthew Bellgard; Trudy M Wassenaar; David W Ussery
Journal:  Funct Integr Genomics       Date:  2006-05-12       Impact factor: 3.410

5.  The complete genome sequence of Escherichia coli K-12.

Authors:  F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

6.  Genomic and proteomic characterization of the broad-host-range Salmonella phage PVP-SE1: creation of a new phage genus.

Authors:  Sílvio B Santos; Andrew M Kropinski; Pieter-Jan Ceyssens; H-W Ackermann; Andre Villegas; Rob Lavigne; Victor N Krylov; Carla M Carvalho; Eugénio C Ferreira; Joana Azeredo
Journal:  J Virol       Date:  2011-08-24       Impact factor: 5.103

7.  A tale of tails: Sialidase is key to success in a model of phage therapy against K1-capsulated Escherichia coli.

Authors:  J J Bull; E R Vimr; I J Molineux
Journal:  Virology       Date:  2009-12-16       Impact factor: 3.616

8.  Identification of F11 fimbriae on chicken Escherichia coli strains.

Authors:  J F van den Bosch; J H Hendriks; I Gladigau; H M Willems; P K Storm; F K de Graaf
Journal:  Infect Immun       Date:  1993-03       Impact factor: 3.441

9.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

10.  MEME SUITE: tools for motif discovery and searching.

Authors:  Timothy L Bailey; Mikael Boden; Fabian A Buske; Martin Frith; Charles E Grant; Luca Clementi; Jingyuan Ren; Wilfred W Li; William S Noble
Journal:  Nucleic Acids Res       Date:  2009-05-20       Impact factor: 16.971

View more
  10 in total

1.  Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain.

Authors:  Kristin N Parent; Jinghua Tang; Giovanni Cardone; Eddie B Gilcrease; Mandy E Janssen; Norman H Olson; Sherwood R Casjens; Timothy S Baker
Journal:  Virology       Date:  2014-07-18       Impact factor: 3.616

2.  Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture.

Authors:  Rachel Gilroy; Anuradha Ravi; Maria Getino; Isabella Pursley; Daniel L Horton; Nabil-Fareed Alikhan; Dave Baker; Karim Gharbi; Neil Hall; Mick Watson; Evelien M Adriaenssens; Ebenezer Foster-Nyarko; Sheikh Jarju; Arss Secka; Martin Antonio; Aharon Oren; Roy R Chaudhuri; Roberto La Ragione; Falk Hildebrand; Mark J Pallen
Journal:  PeerJ       Date:  2021-04-06       Impact factor: 2.984

3.  Complete Genome Sequences of Two Escherichia coli Phages, vB_EcoM_ ESCO5 and vB_EcoM_ESCO13, Which Are Related to phAPEC8.

Authors:  Angélina Trotereau; Mathieu Gonnet; Antoine Viardot; Anne-Christine Lalmanach; Rodrigo Guabiraba; Nathalie Katy Chanteloup; Catherine Schouler
Journal:  Genome Announc       Date:  2017-03-30

4.  Bacteriophage ZCKP1: A Potential Treatment for Klebsiella pneumoniae Isolated From Diabetic Foot Patients.

Authors:  Omar A Taha; Phillippa L Connerton; Ian F Connerton; Ayman El-Shibiny
Journal:  Front Microbiol       Date:  2018-09-11       Impact factor: 5.640

5.  Still Something to Discover: Novel Insights intoEscherichia coli Phage Diversity and Taxonomy.

Authors:  Imke H E Korf; Jan P Meier-Kolthoff; Evelien M Adriaenssens; Andrew M Kropinski; Manfred Nimtz; Manfred Rohde; Mark J van Raaij; Johannes Wittmann
Journal:  Viruses       Date:  2019-05-17       Impact factor: 5.048

6.  The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5.

Authors:  Andrew M Kropinski; Tom Waddell; Juncai Meng; Kristyn Franklin; Hans-Wolfgang Ackermann; Rafiq Ahmed; Amanda Mazzocco; John Yates; Erika J Lingohr; Roger P Johnson
Journal:  Virol J       Date:  2013-03-06       Impact factor: 4.099

Review 7.  Escherichia coli in Europe: an overview.

Authors:  Nerino Allocati; Michele Masulli; Mikhail F Alexeyev; Carmine Di Ilio
Journal:  Int J Environ Res Public Health       Date:  2013-11-25       Impact factor: 3.390

8.  High Emergence of ESBL-Producing E. coli Cystitis: Time to Get Smarter in Cyprus.

Authors:  Leon Cantas; Kaya Suer; Emrah Guler; Turgut Imir
Journal:  Front Microbiol       Date:  2016-01-13       Impact factor: 5.640

9.  Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages.

Authors:  Aurélie Mathieu; Moïra Dion; Ling Deng; Denise Tremblay; Elisabeth Moncaut; Shiraz A Shah; Jakob Stokholm; Karen A Krogfelt; Susanne Schjørring; Hans Bisgaard; Dennis S Nielsen; Sylvain Moineau; Marie-Agnès Petit
Journal:  Nat Commun       Date:  2020-01-17       Impact factor: 14.919

10.  Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment.

Authors:  Nikoline S Olsen; Laura Forero-Junco; Witold Kot; Lars H Hansen
Journal:  Viruses       Date:  2020-09-04       Impact factor: 5.048

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.