Literature DB >> 23106263

Bypass of a psoralen DNA interstrand cross-link by DNA polymerases β, ι, and κ in vitro.

Leigh A Smith1, Alena V Makarova, Laura Samson, Katherine E Thiesen, Alok Dhar, Tadayoshi Bessho.   

Abstract

Repair of DNA interstrand cross-links in mammalian cells involves several biochemically distinctive processes, including the release of one of the cross-linked strands and translesion DNA synthesis (TLS). In this report, we investigated the in vitro TLS activity of a psoralen DNA interstrand cross-link by three DNA repair polymerases, DNA polymerases β, κ, and ι. DNA polymerase β is capable of bypassing a psoralen cross-link with a low efficiency. Cell extracts prepared from DNA polymerase β knockout mouse embryonic fibroblasts showed a reduced bypass activity of the psoralen cross-link, and purified DNA polymerase β restored the bypass activity. In addition, DNA polymerase ι misincorporated thymine across the psoralen cross-link and DNA polymerase κ extended these mispaired primer ends, suggesting that DNA polymerase ι may serve as an inserter and DNA polymerase κ may play a role as an extender in the repair of psoralen DNA interstrand cross-links. The results demonstrated here indicate that multiple DNA polymerases could participate in TLS steps in mammalian DNA interstrand cross-link repair.

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Year:  2012        PMID: 23106263      PMCID: PMC3516411          DOI: 10.1021/bi3008565

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  43 in total

1.  Efficient and error-free replication past a minor-groove DNA adduct by the sequential action of human DNA polymerases iota and kappa.

Authors:  M Todd Washington; Irina G Minko; Robert E Johnson; William T Wolfle; Thomas M Harris; R Stephen Lloyd; Satya Prakash; Louise Prakash
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

Review 2.  Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function.

Authors:  Satya Prakash; Robert E Johnson; Louise Prakash
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

3.  DNA polymerase beta bypasses in vitro a single d(GpG)-cisplatin adduct placed on codon 13 of the HRAS gene.

Authors:  J S Hoffmann; M J Pillaire; G Maga; V Podust; U Hübscher; G Villani
Journal:  Proc Natl Acad Sci U S A       Date:  1995-06-06       Impact factor: 11.205

4.  Requirement of mammalian DNA polymerase-beta in base-excision repair.

Authors:  R W Sobol; J K Horton; R Kühn; H Gu; R K Singhal; R Prasad; K Rajewsky; S H Wilson
Journal:  Nature       Date:  1996-01-11       Impact factor: 49.962

5.  Signature p53 mutation at DNA cross-linking sites in 8-methoxypsoralen and ultraviolet A (PUVA)-induced murine skin cancers.

Authors:  A J Nataraj; H S Black; H N Ananthaswamy
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-23       Impact factor: 11.205

6.  Co-localization in replication foci and interaction of human Y-family members, DNA polymerase pol eta and REVl protein.

Authors:  Agnès Tissier; Patricia Kannouche; Marie-Pierre Reck; Alan R Lehmann; Robert P P Fuchs; Agnès Cordonnier
Journal:  DNA Repair (Amst)       Date:  2004-11-02

7.  Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing.

Authors:  Deepak T Nair; Robert E Johnson; Satya Prakash; Louise Prakash; Aneel K Aggarwal
Journal:  Nature       Date:  2004-07-15       Impact factor: 49.962

8.  Mutation specificity of 8-methoxypsoralen plus two doses of UVA irradiation in the hprt gene in diploid human fibroblasts.

Authors:  S C Yang; J G Lin; C C Chiou; L Y Chen; J L Yang
Journal:  Carcinogenesis       Date:  1994-02       Impact factor: 4.944

9.  Mutagenesis by 8-methoxypsoralen and 5-methylangelicin photoadducts in mouse fibroblasts: mutations at cross-linkable sites induced by offoadducts as well as cross-links.

Authors:  E J Gunther; T M Yeasky; F P Gasparro; P M Glazer
Journal:  Cancer Res       Date:  1995-03-15       Impact factor: 12.701

10.  8-Methoxypsoralen induced mutations are highly targeted at crosslinkable sites of photoaddition on the non-transcribed strand of a mammalian chromosomal gene.

Authors:  E Sage; E A Drobetsky; E Moustacchi
Journal:  EMBO J       Date:  1993-02       Impact factor: 11.598

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  11 in total

1.  Mutagenic Bypass of an Oxidized Abasic Lesion-Induced DNA Interstrand Cross-Link Analogue by Human Translesion Synthesis DNA Polymerases.

Authors:  Wenyan Xu; Adam Ouellette; Souradyuti Ghosh; Tylor C O'Neill; Marc M Greenberg; Linlin Zhao
Journal:  Biochemistry       Date:  2015-12-14       Impact factor: 3.162

Review 2.  A role for the base excision repair enzyme NEIL3 in replication-dependent repair of interstrand DNA cross-links derived from psoralen and abasic sites.

Authors:  Zhiyu Yang; Maryam Imani Nejad; Jacqueline Gamboa Varela; Nathan E Price; Yinsheng Wang; Kent S Gates
Journal:  DNA Repair (Amst)       Date:  2017-02-20

3.  Interaction between the Rev1 C-Terminal Domain and the PolD3 Subunit of Polζ Suggests a Mechanism of Polymerase Exchange upon Rev1/Polζ-Dependent Translesion Synthesis.

Authors:  Yulia Pustovalova; Mariana T Q Magalhães; Sanjay D'Souza; Alessandro A Rizzo; George Korza; Graham C Walker; Dmitry M Korzhnev
Journal:  Biochemistry       Date:  2016-03-24       Impact factor: 3.162

Review 4.  The structural basis of XRCC1-mediated DNA repair.

Authors:  Robert E London
Journal:  DNA Repair (Amst)       Date:  2015-02-16

5.  DNA polymerase β contains a functional nuclear localization signal at its N-terminus.

Authors:  Thomas W Kirby; Natalie R Gassman; Cassandra E Smith; Ming-Lang Zhao; Julie K Horton; Samuel H Wilson; Robert E London
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

Review 6.  Involvement of translesion synthesis DNA polymerases in DNA interstrand crosslink repair.

Authors:  Upasana Roy; Orlando D Schärer
Journal:  DNA Repair (Amst)       Date:  2016-05-13

7.  Three Human Pol ι Variants with Impaired Polymerase Activity Fail to Rescue H2O2 Sensitivity in POLI-Deficient Cells.

Authors:  Mina Yeom; Jin-Kyung Hong; Jae-Kwon Kim; F Peter Guengerich; Jeong-Yun Choi
Journal:  Chem Res Toxicol       Date:  2020-07-23       Impact factor: 3.973

8.  Nucleotide excision repair of chemically stabilized analogues of DNA interstrand cross-links produced from oxidized abasic sites.

Authors:  Souradyuti Ghosh; Marc M Greenberg
Journal:  Biochemistry       Date:  2014-09-10       Impact factor: 3.162

9.  Identification of amino acid residues involved in the dRP-lyase activity of human Pol ι.

Authors:  Nataliya Miropolskaya; Ivan Petushkov; Andrey Kulbachinskiy; Alena V Makarova
Journal:  Sci Rep       Date:  2017-08-31       Impact factor: 4.379

10.  Replication and repair of a reduced 2΄-deoxyguanosine-abasic site interstrand cross-link in human cells.

Authors:  Nathan E Price; Lin Li; Kent S Gates; Yinsheng Wang
Journal:  Nucleic Acids Res       Date:  2017-06-20       Impact factor: 16.971

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