Literature DB >> 15199127

Efficient and error-free replication past a minor-groove DNA adduct by the sequential action of human DNA polymerases iota and kappa.

M Todd Washington1, Irina G Minko, Robert E Johnson, William T Wolfle, Thomas M Harris, R Stephen Lloyd, Satya Prakash, Louise Prakash.   

Abstract

DNA polymerase iota (Poliota) is a member of the Y family of DNA polymerases, which promote replication through DNA lesions. The role of Poliota in lesion bypass, however, has remained unclear. Poliota is highly unusual in that it incorporates nucleotides opposite different template bases with very different efficiencies and fidelities. Since interactions of DNA polymerases with the DNA minor groove provide for the nearly equivalent efficiencies and fidelities of nucleotide incorporation opposite each of the four template bases, we considered the possibility that Poliota differs from other DNA polymerases in not being as sensitive to distortions of the minor groove at the site of the incipient base pair and that this enables it to incorporate nucleotides opposite highly distorting minor-groove DNA adducts. To check the validity of this idea, we examined whether Poliota could incorporate nucleotides opposite the gamma-HOPdG adduct, which is formed from an initial reaction of acrolein with the N(2) of guanine. We show here that Poliota incorporates a C opposite this adduct with nearly the same efficiency as it does opposite a nonadducted template G residue. The subsequent extension step, however, is performed by Polkappa, which efficiently extends from the C incorporated opposite the adduct. Based upon these observations, we suggest that an important biological role of Poliota and Polkappa is to act sequentially to carry out the efficient and accurate bypass of highly distorting minor-groove DNA adducts of the purine bases.

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Year:  2004        PMID: 15199127      PMCID: PMC480884          DOI: 10.1128/MCB.24.13.5687-5693.2004

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  49 in total

1.  Yeast DNA polymerase eta utilizes an induced-fit mechanism of nucleotide incorporation.

Authors:  M T Washington; L Prakash; S Prakash
Journal:  Cell       Date:  2001-12-28       Impact factor: 41.582

2.  Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis.

Authors:  J Trincao; R E Johnson; C R Escalante; S Prakash; L Prakash; A K Aggarwal
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

3.  Interchain cross-linking of DNA mediated by the principal adduct of acrolein.

Authors:  I D Kozekov; L V Nechev; A Sanchez; C M Harris; R S Lloyd; T M Harris
Journal:  Chem Res Toxicol       Date:  2001-11       Impact factor: 3.739

Review 4.  Role of 1,N2-propanodeoxyguanosine adducts as endogenous DNA lesions in rodents and humans.

Authors:  F L Chung; L Zhang; J E Ocando; R G Nath
Journal:  IARC Sci Publ       Date:  1999

5.  hRAD30 mutations in the variant form of xeroderma pigmentosum.

Authors:  R E Johnson; C M Kondratick; S Prakash; L Prakash
Journal:  Science       Date:  1999-07-09       Impact factor: 47.728

6.  Targeting of human DNA polymerase iota to the replication machinery via interaction with PCNA.

Authors:  L Haracska; R E Johnson; I Unk; B B Phillips; J Hurwitz; L Prakash; S Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

7.  Stimulation of DNA synthesis activity of human DNA polymerase kappa by PCNA.

Authors:  Lajos Haracska; Ildiko Unk; Robert E Johnson; Barbara B Phillips; Jerard Hurwitz; Louise Prakash; Satya Prakash
Journal:  Mol Cell Biol       Date:  2002-02       Impact factor: 4.272

8.  Fidelity of human DNA polymerase eta.

Authors:  R E Johnson; M T Washington; S Prakash; L Prakash
Journal:  J Biol Chem       Date:  2000-03-17       Impact factor: 5.157

9.  Translesion DNA synthesis by yeast DNA polymerase eta on templates containing N2-guanine adducts of 1,3-butadiene metabolites.

Authors:  I G Minko; M T Washington; L Prakash; S Prakash; R S Lloyd
Journal:  J Biol Chem       Date:  2000-11-02       Impact factor: 5.157

10.  Fidelity and processivity of Saccharomyces cerevisiae DNA polymerase eta.

Authors:  M T Washington; R E Johnson; S Prakash; L Prakash
Journal:  J Biol Chem       Date:  1999-12-24       Impact factor: 5.157

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  65 in total

1.  UmuD(2) inhibits a non-covalent step during DinB-mediated template slippage on homopolymeric nucleotide runs.

Authors:  James J Foti; Angela M Delucia; Catherine M Joyce; Graham C Walker
Journal:  J Biol Chem       Date:  2010-05-13       Impact factor: 5.157

2.  Bypass of N²-ethylguanine by human DNA polymerase κ.

Authors:  Matthew G Pence; Patrick Blans; Charles N Zink; James C Fishbein; Fred W Perrino
Journal:  DNA Repair (Amst)       Date:  2010-10-16

3.  Replication of the 2,6-diamino-4-hydroxy-N(5)-(methyl)-formamidopyrimidine (MeFapy-dGuo) adduct by eukaryotic DNA polymerases.

Authors:  Plamen P Christov; Kinrin Yamanaka; Jeong-Yun Choi; Kei-ichi Takata; Richard D Wood; F Peter Guengerich; R Stephen Lloyd; Carmelo J Rizzo
Journal:  Chem Res Toxicol       Date:  2012-07-06       Impact factor: 3.739

4.  Structural basis for error-free replication of oxidatively damaged DNA by yeast DNA polymerase η.

Authors:  Timothy D Silverstein; Rinku Jain; Robert E Johnson; Louise Prakash; Satya Prakash; Aneel K Aggarwal
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

5.  Biochemical evidence for the requirement of Hoogsteen base pairing for replication by human DNA polymerase iota.

Authors:  Robert E Johnson; Louise Prakash; Satya Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-13       Impact factor: 11.205

6.  Evidence for a Watson-Crick hydrogen bonding requirement in DNA synthesis by human DNA polymerase kappa.

Authors:  William T Wolfle; M Todd Washington; Eric T Kool; Thomas E Spratt; Sandra A Helquist; Louise Prakash; Satya Prakash
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

7.  Acetaldehyde stimulates FANCD2 monoubiquitination, H2AX phosphorylation, and BRCA1 phosphorylation in human cells in vitro: implications for alcohol-related carcinogenesis.

Authors:  Cheryl Marietta; Larry H Thompson; Jane E Lamerdin; P J Brooks
Journal:  Mutat Res       Date:  2009-04-05       Impact factor: 2.433

8.  Accommodation of an N-(deoxyguanosin-8-yl)-2-acetylaminofluorene adduct in the active site of human DNA polymerase iota: Hoogsteen or Watson-Crick base pairing?

Authors:  Kerry Donny-Clark; Robert Shapiro; Suse Broyde
Journal:  Biochemistry       Date:  2009-01-13       Impact factor: 3.162

9.  Insertion of dNTPs opposite the 1,N2-propanodeoxyguanosine adduct by Sulfolobus solfataricus P2 DNA polymerase IV.

Authors:  Yazhen Wang; Sarah K Musser; Sam Saleh; Lawrence J Marnett; Martin Egli; Michael P Stone
Journal:  Biochemistry       Date:  2008-06-19       Impact factor: 3.162

10.  Lesion bypass of N2-ethylguanine by human DNA polymerase iota.

Authors:  Matthew G Pence; Patrick Blans; Charles N Zink; Thomas Hollis; James C Fishbein; Fred W Perrino
Journal:  J Biol Chem       Date:  2008-11-03       Impact factor: 5.157

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