Literature DB >> 23105077

Genome sequence of Pectobacterium carotovorum subsp. carotovorum strain PCC21, a pathogen causing soft rot in Chinese cabbage.

Tae-Ho Park1, Beom-Soon Choi, Ah-Young Choi, Ik-Young Choi, Sunggi Heu, Beom-Seok Park.   

Abstract

Pectobacterium carotovorum is a plant-pathogenic enterobacterium responsible for soft rot in various commercially important plants. Here we report the complete genome sequence and automatic annotation of strain PCC21.

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Year:  2012        PMID: 23105077      PMCID: PMC3486416          DOI: 10.1128/JB.01583-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  10 in total

1.  Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946.

Authors:  M Sebaihia; A M Bocsanczy; B S Biehl; M A Quail; N T Perna; J D Glasner; G A DeClerck; S Cartinhour; D J Schneider; S D Bentley; J Parkhill; S V Beer
Journal:  J Bacteriol       Date:  2010-01-29       Impact factor: 3.490

2.  Complete genome sequence of Japanese erwinia strain ejp617, a bacterial shoot blight pathogen of pear.

Authors:  Duck Hwan Park; Shree Prasad Thapa; Beom-Soon Choi; Won-Sik Kim; Jang Hyun Hur; Jun Mo Cho; Jong-Sung Lim; Ik-Young Choi; Chun Keun Lim
Journal:  J Bacteriol       Date:  2010-11-12       Impact factor: 3.490

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Characterization of a new bacteriocin, Carocin D, from Pectobacterium carotovorum subsp. carotovorum Pcc21.

Authors:  Eunjung Roh; Tae-Ho Park; Myung-Il Kim; Seungdon Lee; Sangryeol Ryu; Chang-Sik Oh; Sangkee Rhee; Doo-Ho Kim; Beom-Seok Park; Sunggi Heu
Journal:  Appl Environ Microbiol       Date:  2010-09-24       Impact factor: 4.792

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Genome sequence of an Erwinia amylovora strain with pathogenicity restricted to Rubus plants.

Authors:  Rachel Powney; Theo H M Smits; Tim Sawbridge; Beatrice Frey; Jochen Blom; Jürg E Frey; Kim M Plummer; Steven V Beer; Joanne Luck; Brion Duffy; Brendan Rodoni
Journal:  J Bacteriol       Date:  2010-12-03       Impact factor: 3.490

7.  Construction of random sheared fosmid library from Chinese cabbage and its use for Brassica rapa genome sequencing project.

Authors:  Tae-Ho Park; Beom-Seok Park; Jin-A Kim; Joon Ki Hong; Mina Jin; Young-Joo Seol; Jeong-Hwan Mun
Journal:  J Genet Genomics       Date:  2011-01       Impact factor: 4.275

8.  Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.

Authors:  K S Bell; M Sebaihia; L Pritchard; M T G Holden; L J Hyman; M C Holeva; N R Thomson; S D Bentley; L J C Churcher; K Mungall; R Atkin; N Bason; K Brooks; T Chillingworth; K Clark; J Doggett; A Fraser; Z Hance; H Hauser; K Jagels; S Moule; H Norbertczak; D Ormond; C Price; M A Quail; M Sanders; D Walker; S Whitehead; G P C Salmond; P R J Birch; J Parkhill; I K Toth
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-19       Impact factor: 11.205

9.  Diverse Antibacterial activity of Pectobacterium carotovorum subsp.carotovorum isolated in Korea.

Authors:  Eunjung Roh; Seungdon Lee; Yonghoon Lee; Dongsu Ra; Jaehyuk Choi; Eunpyo Moon; Sunggi Heu
Journal:  J Microbiol Biotechnol       Date:  2009-01       Impact factor: 2.351

10.  Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity.

Authors:  Theo H M Smits; Sebastian Jaenicke; Fabio Rezzonico; Tim Kamber; Alexander Goesmann; Jürg E Frey; Brion Duffy
Journal:  BMC Genomics       Date:  2010-01-04       Impact factor: 3.969

  10 in total
  12 in total

1.  Plant phenolic acids affect the virulence of Pectobacterium aroidearum and P. carotovorum ssp. brasiliense via quorum sensing regulation.

Authors:  Janak Raj Joshi; Saul Burdman; Alexander Lipsky; Shaked Yariv; Iris Yedidia
Journal:  Mol Plant Pathol       Date:  2015-09-07       Impact factor: 5.663

2.  Genomic Insights of Pectobacterium carotovorum Strain M022 Quorum-Sensing Activity through Whole-Genome Sequencing.

Authors:  Kok-Gan Chan; Wen-Si Tan
Journal:  Genome Announc       Date:  2015-02-12

3.  Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB.

Authors:  Colin Buttimer; Hanne Hendrix; Hugo Oliveira; Aidan Casey; Horst Neve; Olivia McAuliffe; R Paul Ross; Colin Hill; Jean-Paul Noben; Jim O'Mahony; Rob Lavigne; Aidan Coffey
Journal:  Front Microbiol       Date:  2017-01-24       Impact factor: 5.640

4.  Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle.

Authors:  Xiaoying Li; Yali Ma; Shuqing Liang; Yu Tian; Sanjun Yin; Sisi Xie; Hua Xie
Journal:  BMC Genomics       Date:  2018-12-07       Impact factor: 3.969

5.  Comparative genomic analysis of Pectobacterium carotovorum subsp. brasiliense SX309 provides novel insights into its genetic and phenotypic features.

Authors:  Lei Li; Lifang Yuan; Yanxia Shi; Xuewen Xie; Ali Chai; Qi Wang; Baoju Li
Journal:  BMC Genomics       Date:  2019-06-13       Impact factor: 3.969

6.  Pathogenicity of and plant immunity to soft rot pectobacteria.

Authors:  Pär R Davidsson; Tarja Kariola; Outi Niemi; E T Palva
Journal:  Front Plant Sci       Date:  2013-06-11       Impact factor: 5.753

7.  CRISPRTarget: bioinformatic prediction and analysis of crRNA targets.

Authors:  Ambarish Biswas; Joshua N Gagnon; Stan J J Brouns; Peter C Fineran; Chris M Brown
Journal:  RNA Biol       Date:  2013-03-14       Impact factor: 4.652

8.  Genetic Diversity of Pectobacterium carotovorum subsp. brasiliensis Isolated in Korea.

Authors:  Dong Hwan Lee; Jin-Beom Kim; Jeong-A Lim; Sang-Wook Han; Sunggi Heu
Journal:  Plant Pathol J       Date:  2014-06       Impact factor: 1.795

9.  SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals.

Authors:  Yevgeny Nikolaichik; Aliaksandr U Damienikan
Journal:  PeerJ       Date:  2016-05-24       Impact factor: 2.984

10.  Genome-Wide Analyses Revealed Remarkable Heterogeneity in Pathogenicity Determinants, Antimicrobial Compounds, and CRISPR-Cas Systems of Complex Phytopathogenic Genus Pectobacterium.

Authors:  Dario Arizala; Mohammad Arif
Journal:  Pathogens       Date:  2019-11-20
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