Literature DB >> 23105061

Whole-genome sequence of N-acylhomoserine lactone-synthesizing and -degrading Acinetobacter sp. strain GG2.

Kar-Wai Hong1, Chong-Lek Koh, Choon-Kook Sam, Wai-Fong Yin, Kok-Gan Chan.   

Abstract

Acinetobacter sp. strain GG2 is a quorum-sensing and quorum-quenching bacterium isolated from the ginger rhizosphere. It degrades a broad range of N-acylhomoserine lactone molecules via lactonase. The genome sequence of strain GG2 may provide insights on the regulation of quorum-sensing and quorum-quenching mechanisms in this bacterium.

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Year:  2012        PMID： 23105061      PMCID： PMC3486371          DOI： 10.1128/JB.01579-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 2.  Quorum sensing in Acinetobacter: an emerging pathogen.

Authors:  Nidhi Bhargava; Prince Sharma; Neena Capalash
Journal:  Crit Rev Microbiol       Date:  2010-11       Impact factor: 7.624

3.  Degradation of acyl-homoserine lactone molecules by Acinetobacter sp. strain C1010.

Authors:  Beom Ryong Kang; Jung Hoon Lee; Sug Ju Ko; Yong Hwan Lee; Jae Soon Cha; Baik Ho Cho; Young Cheol Kim
Journal:  Can J Microbiol       Date:  2004-11       Impact factor: 2.419

4.  Complete genome sequence of the diesel-degrading Acinetobacter sp. strain DR1.

Authors:  Jaejoon Jung; Jeong-Hun Baek; Woojun Park
Journal:  J Bacteriol       Date:  2010-07-16       Impact factor: 3.490

5.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

6.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors:  Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937

7.  Stereochemical insignificance discovered in Acinetobacter baumannii quorum sensing.

Authors:  Amanda L Garner; Sook Kyung Kim; Jie Zhu; Anjali Kumari Struss; Richard Watkins; Brent D Feske; Gunnar F Kaufmann; Kim D Janda
Journal:  PLoS One       Date:  2012-05-22       Impact factor: 3.240

8.  Characterization of N-acylhomoserine lactone-degrading bacteria associated with the Zingiber officinale (ginger) rhizosphere: co-existence of quorum quenching and quorum sensing in Acinetobacter and Burkholderia.

Authors:  Kok-Gan Chan; Steve Atkinson; Kalai Mathee; Choon-Kook Sam; Siri Ram Chhabra; Miguel Cámara; Chong-Lek Koh; Paul Williams
Journal:  BMC Microbiol       Date:  2011-03-08       Impact factor: 3.605

9.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; Karen Clark; David J Lipman; James Ostell; Eric W Sayers
Journal:  Nucleic Acids Res       Date:  2011-12-05       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  10 in total
  5 in total

1.  Degradation of bacterial quorum sensing signaling molecules by the microscopic yeast Trichosporon loubieri isolated from tropical wetland waters.

Authors:  Cheng-Siang Wong; Chong-Lek Koh; Choon-Kook Sam; Jian Woon Chen; Yee Meng Chong; Wai-Fong Yin; Kok-Gan Chan
Journal:  Sensors (Basel)       Date:  2013-09-25       Impact factor: 3.576

2.  Unravelling the genome of long chain N-acylhomoserine lactone-producing Acinetobacter sp. strain GG2 and identification of its quorum sensing synthase gene.

Authors:  Kah Yan How; Kar-Wai Hong; Choon-Kook Sam; Chong-Lek Koh; Wai-Fong Yin; Kok-Gan Chan
Journal:  Front Microbiol       Date:  2015-04-14       Impact factor: 5.640

3.  Draft Genome Sequence of Aeromonas caviae Strain L12, a Quorum-Sensing Strain Isolated from a Freshwater Lake in Malaysia.

Authors:  Kok-Gan Chan; Pui-San Chin; Kok Keng Tee; Chien-Yi Chang; Wai-Fong Yin; Kit-Yeng Sheng
Journal:  Genome Announc       Date:  2015-03-05

4.  Whole-Genome Sequence of Quorum-Sensing Vibrio tubiashii Strain T33.

Authors:  Nur Izzati Mohamad; Wai-Fong Yin; Kok-Gan Chan
Journal:  Genome Announc       Date:  2015-01-02

5.  N-acyl homoserine lactone-producing Pseudomonas putida strain T2-2 from human tongue surface.

Authors:  Jian-Woon Chen; Shenyang Chin; Kok Keng Tee; Wai-Fong Yin; Yeun Mun Choo; Kok-Gan Chan
Journal:  Sensors (Basel)       Date:  2013-09-30       Impact factor: 3.576
  5 in total

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