Literature DB >> 20639327

Complete genome sequence of the diesel-degrading Acinetobacter sp. strain DR1.

Jaejoon Jung1, Jeong-Hun Baek, Woojun Park.   

Abstract

The genus Acinetobacter is ubiquitous in soil, aquatic, and sediment environments and includes pathogenic strains, such as A. baumannii. Many Acinetobacter species isolated from various environments have biotechnological potential since they are capable of degrading a variety of pollutants. Acinetobacter sp. strain DR1 has been identified as a diesel degrader. Here we report the complete genome sequence of Acinetobacter sp. DR1 isolated from the soil of a rice paddy.

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Year:  2010        PMID： 20639327      PMCID： PMC2937415          DOI： 10.1128/JB.00722-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

Review 1.  Opportunities for genetic investigation afforded by Acinetobacter baylyi, a nutritionally versatile bacterial species that is highly competent for natural transformation.

Authors:  David M Young; Donna Parke; L Nicholas Ornston
Journal:  Annu Rev Microbiol       Date:  2005       Impact factor: 15.500

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Contribution of quorum-sensing system to hexadecane degradation and biofilm formation in Acinetobacter sp. strain DR1.

Authors:  Y-S Kang; W Park
Journal:  J Appl Microbiol       Date:  2010-07-09       Impact factor: 3.772

5.  Trade-off between antibiotic resistance and biological fitness in Acinetobacter sp. strain DR1.

Authors:  Yoon-Suk Kang; Woojun Park
Journal:  Environ Microbiol       Date:  2010-02-23       Impact factor: 5.491

6.  Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.

Authors:  Valérie Barbe; David Vallenet; Nuria Fonknechten; Annett Kreimeyer; Sophie Oztas; Laurent Labarre; Stéphane Cruveiller; Catherine Robert; Simone Duprat; Patrick Wincker; L Nicholas Ornston; Jean Weissenbach; Philippe Marlière; Georges N Cohen; Claudine Médigue
Journal:  Nucleic Acids Res       Date:  2004-10-28       Impact factor: 16.971

7.  Protection against diesel oil toxicity by sodium chloride-induced exopolysaccharides in Acinetobacter sp. strain DR1.

Authors:  Yoon-Suk Kang; Woojun Park
Journal:  J Biosci Bioeng       Date:  2009-08-26       Impact factor: 2.894

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  9 in total
  25 in total

1.  Previously undescribed plasmids recovered from activated sludge confer tetracycline resistance and phenotypic changes to Acinetobacter oleivorans DR1.

Authors:  Hyerim Hong; Hyeok-Jin Ko; In-Geol Choi; Woojun Park
Journal:  Microb Ecol       Date:  2013-12-13       Impact factor: 4.552

2.  Lineage-specific SoxR-mediated Regulation of an Endoribonuclease Protects Non-enteric Bacteria from Redox-active Compounds.

Authors:  Jisun Kim; Chulwoo Park; James A Imlay; Woojun Park
Journal:  J Biol Chem       Date:  2016-11-28       Impact factor: 5.157

3.  Effect of red clay on diesel bioremediation and soil bacterial community.

Authors:  Jaejoon Jung; Sungjong Choi; Hyerim Hong; Jung-Suk Sung; Woojun Park
Journal:  Microb Ecol       Date:  2014-04-18       Impact factor: 4.552

4.  Inhibitory Effect of Taurine on Biofilm Formation During Alkane Degradation in Acinetobacter oleivorans DR1.

Authors:  Hyo Jung Eom; Woojun Park
Journal:  Microb Ecol       Date:  2017-06-15       Impact factor: 4.552

5.  Diverse responses to UV light exposure in Acinetobacter include the capacity for DNA damage-induced mutagenesis in the opportunistic pathogens Acinetobacter baumannii and Acinetobacter ursingii.

Authors:  Janelle M Hare; James A Bradley; Ching-Li Lin; Tyler J Elam
Journal:  Microbiology       Date:  2011-11-24       Impact factor: 2.777

6.  Acinetobacter oleivorans sp. nov. is capable of adhering to and growing on diesel-oil.

Authors:  Yoon-Suk Kang; Jaejoon Jung; Che Ok Jeon; Woojun Park
Journal:  J Microbiol       Date:  2011-03-03       Impact factor: 3.422

7.  Genomic library screening for viruses from the human dental plaque revealed pathogen-specific lytic phage sequences.

Authors:  Ahmed Nasser Al-Jarbou
Journal:  Curr Microbiol       Date:  2011-10-04       Impact factor: 2.188

8.  Comparative genomic analysis of Acinetobacter oleivorans DR1 to determine strain-specific genomic regions and gentisate biodegradation.

Authors:  Jaejoon Jung; Eugene L Madsen; Che Ok Jeon; Woojun Park
Journal:  Appl Environ Microbiol       Date:  2011-08-19       Impact factor: 4.792

9.  Draft Genome Sequence of Cyclohexylamine-Degrading Strain Acinetobacter sp. YT-02 Isolated.

Authors:  Da-Zhong Yan; Ya-Ting Gan; Hui Zhou; Jun Liu; Xin Li
Journal:  Curr Microbiol       Date:  2017-10-24       Impact factor: 2.188

10.  Whole-genome sequence of N-acylhomoserine lactone-synthesizing and -degrading Acinetobacter sp. strain GG2.

Authors:  Kar-Wai Hong; Chong-Lek Koh; Choon-Kook Sam; Wai-Fong Yin; Kok-Gan Chan
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490
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