Literature DB >> 23105059

Complete genome sequence of Klebsiella pneumoniae 1084, a hypermucoviscosity-negative K1 clinical strain.

Ann-Chi Lin1, Tsai-Lien Liao, Yi-Chun Lin, Yi-Chyi Lai, Min-Chi Lu, Ying-Tsong Chen.   

Abstract

We report the complete genome sequence of Klebsiella pneumoniae 1084, a hypermucoviscosity-negative K1 clinical strain. Sequencing and annotation revealed a 5,386,705-bp circular chromosome (57.4% G+C content), which contains 4,962 protein-coding genes, 80 tRNA genes, and 25 rRNA genes.

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Year:  2012        PMID： 23105059      PMCID： PMC3486373          DOI： 10.1128/JB.01548-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  4 in total

1.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

2.  Assessment of hypermucoviscosity as a virulence factor for experimental Klebsiella pneumoniae infections: comparative virulence analysis with hypermucoviscosity-negative strain.

Authors:  Yi-Chun Lin; Min-Chi Lu; Hui-Ling Tang; Hsu-Chung Liu; Ching-Hsien Chen; Keh-Sen Liu; Chingju Lin; Chien-Shun Chiou; Ming-Ko Chiang; Chuan-Mu Chen; Yi-Chyi Lai
Journal:  BMC Microbiol       Date:  2011-03-08       Impact factor: 3.605

3.  A novel virulence gene in Klebsiella pneumoniae strains causing primary liver abscess and septic metastatic complications.

Authors:  Chi-Tai Fang; Yi-Ping Chuang; Chia-Tung Shun; Shan-Chwen Chang; Jin-Town Wang
Journal:  J Exp Med       Date:  2004-03-01       Impact factor: 14.307

4.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  4 in total
  19 in total

1.  Comparative analysis of Klebsiella pneumoniae strains isolated in 2012-2016 that differ by antibiotic resistance genes and virulence genes profiles.

Authors:  Anastasia I Lev; Eugeny I Astashkin; Angelina A Kislichkina; Ekaterina V Solovieva; Tatiana I Kombarova; Olga V Korobova; Olga N Ershova; Irina A Alexandrova; Vladimir E Malikov; Alexander G Bogun; Alexander I Borzilov; Nikolay V Volozhantsev; Edward A Svetoch; Nadezhda K Fursova
Journal:  Pathog Glob Health       Date:  2018-04-30       Impact factor: 2.894

2.  Genome sequencing and comparative analysis of an NDM-1-producing Klebsiella pneumoniae ST15 isolated from a refugee patient.

Authors:  Tamara Salloum; Harout Arabaghian; Sahar Alousi; Edmond Abboud; Sima Tokajian
Journal:  Pathog Glob Health       Date:  2017-04-11       Impact factor: 2.894

Review 3.  Carbapenemase-producing Klebsiella pneumoniae: molecular and genetic decoding.

Authors:  Liang Chen; Barun Mathema; Kalyan D Chavda; Frank R DeLeo; Robert A Bonomo; Barry N Kreiswirth
Journal:  Trends Microbiol       Date:  2014-10-07       Impact factor: 17.079

4.  Whole-genome assembly of Klebsiella pneumoniae coproducing NDM-1 and OXA-232 carbapenemases using single-molecule, real-time sequencing.

Authors:  Yohei Doi; Tracy H Hazen; Matthew Boitano; Yu-Chih Tsai; Tyson A Clark; Jonas Korlach; David A Rasko
Journal:  Antimicrob Agents Chemother       Date:  2014-07-28       Impact factor: 5.191

5.  Mapping the Evolution of Hypervirulent Klebsiella pneumoniae.

Authors:  Carsten Struve; Chandler C Roe; Marc Stegger; Steen G Stahlhut; Dennis S Hansen; David M Engelthaler; Paal S Andersen; Elizabeth M Driebe; Paul Keim; Karen A Krogfelt
Journal:  MBio       Date:  2015-07-21       Impact factor: 7.867

6.  Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm.

Authors:  Aurélia Caputo; Vicky Merhej; Kalliopi Georgiades; Pierre-Edouard Fournier; Olivier Croce; Catherine Robert; Didier Raoult
Journal:  Biol Direct       Date:  2015-09-30       Impact factor: 4.540

7.  Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms.

Authors:  Pablo Ivan Pereira Ramos; Renata Christina Picão; Luiz Gonzaga Paula de Almeida; Nicholas Costa B Lima; Raquel Girardello; Ana Carolina P Vivan; Danilo E Xavier; Fernando G Barcellos; Marsileni Pelisson; Eliana C Vespero; Claudine Médigue; Ana Tereza Ribeiro de Vasconcelos; Ana Cristina Gales; Marisa Fabiana Nicolás
Journal:  BMC Genomics       Date:  2014-01-22       Impact factor: 3.969

8.  Genotoxic Klebsiella pneumoniae in Taiwan.

Authors:  Yi-Chyi Lai; Ann-Chi Lin; Ming-Ko Chiang; Yu-Han Dai; Chih-Chieh Hsu; Min-Chi Lu; Chun-Yi Liau; Ying-Tsong Chen
Journal:  PLoS One       Date:  2014-05-22       Impact factor: 3.240

9.  A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae.

Authors:  Hao Chung The; Abhilasha Karkey; Duy Pham Thanh; Christine J Boinett; Amy K Cain; Matthew Ellington; Kate S Baker; Sabina Dongol; Corinne Thompson; Simon R Harris; Thibaut Jombart; Tu Le Thi Phuong; Nhu Tran Do Hoang; Tuyen Ha Thanh; Shrijana Shretha; Suchita Joshi; Buddha Basnyat; Guy Thwaites; Nicholas R Thomson; Maia A Rabaa; Stephen Baker
Journal:  EMBO Mol Med       Date:  2015-03       Impact factor: 12.137

10.  Survey of clustered regularly interspaced short palindromic repeats and their associated Cas proteins (CRISPR/Cas) systems in multiple sequenced strains of Klebsiella pneumoniae.

Authors:  Martha Lorena Ostria-Hernández; Carlos Javier Sánchez-Vallejo; J Antonio Ibarra; Graciela Castro-Escarpulli
Journal:  BMC Res Notes       Date:  2015-08-04
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