Literature DB >> 23105049

Complete genome sequence of a variant of Campylobacter jejuni NCTC 11168.

Joana Revez1, Thomas Schott, Mirko Rossi, Marja-Liisa Hänninen.   

Abstract

Campylobacter jejuni NCTC 11168 is widely used in research, but at least two variants have been reported. The available genome was sequenced from a variant which later showed a different phenotype and gene expression profile. Here we present the complete genome sequence of a second variant of C. jejuni NCTC 11168.

Entities:  

Mesh:

Year:  2012        PMID: 23105049      PMCID: PMC3486362          DOI: 10.1128/JB.01385-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  11 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences.

Authors:  J Parkhill; B W Wren; K Mungall; J M Ketley; C Churcher; D Basham; T Chillingworth; R M Davies; T Feltwell; S Holroyd; K Jagels; A V Karlyshev; S Moule; M J Pallen; C W Penn; M A Quail; M A Rajandream; K M Rutherford; A H van Vliet; S Whitehead; B G Barrell
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

4.  Identification of genetic differences between two Campylobacter jejuni strains with different colonization potentials.

Authors:  If H Ahmed; Georgina Manning; Trudy M Wassenaar; Shaun Cawthraw; Diane G Newell
Journal:  Microbiology (Reading)       Date:  2002-04       Impact factor: 2.777

5.  The genome-sequenced variant of Campylobacter jejuni NCTC 11168 and the original clonal clinical isolate differ markedly in colonization, gene expression, and virulence-associated phenotypes.

Authors:  Erin C Gaynor; Shaun Cawthraw; Georgina Manning; Joanna K MacKichan; Stanley Falkow; Diane G Newell
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

6.  Genome-wide expression analyses of Campylobacter jejuni NCTC11168 reveals coordinate regulation of motility and virulence by flhA.

Authors:  Catherine D Carrillo; Eduardo Taboada; John H E Nash; Patricia Lanthier; John Kelly; Peter C Lau; Rachel Verhulp; Oksana Mykytczuk; Jonathan Sy; Wendy A Findlay; Kingsley Amoako; Susantha Gomis; Philip Willson; John W Austin; Andy Potter; Lorne Babiuk; Brenda Allan; Christine M Szymanski
Journal:  J Biol Chem       Date:  2004-02-25       Impact factor: 5.157

7.  BIGSdb: Scalable analysis of bacterial genome variation at the population level.

Authors:  Keith A Jolley; Martin C J Maiden
Journal:  BMC Bioinformatics       Date:  2010-12-10       Impact factor: 3.169

8.  ConDeTri--a content dependent read trimmer for Illumina data.

Authors:  Linnéa Smeds; Axel Künstner
Journal:  PLoS One       Date:  2011-10-19       Impact factor: 3.240

9.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

10.  Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence.

Authors:  Ozan Gundogdu; Stephen D Bentley; Matt T Holden; Julian Parkhill; Nick Dorrell; Brendan W Wren
Journal:  BMC Genomics       Date:  2007-06-12       Impact factor: 3.969

View more
  8 in total

1.  The Helical Shape of Campylobacter jejuni Promotes In Vivo Pathogenesis by Aiding Transit through Intestinal Mucus and Colonization of Crypts.

Authors:  Martin Stahl; Emilisa Frirdich; Jenny Vermeulen; Yuliya Badayeva; Xiaoxia Li; Bruce A Vallance; Erin C Gaynor
Journal:  Infect Immun       Date:  2016-11-18       Impact factor: 3.441

2.  Whole-genome sequencing of gentamicin-resistant Campylobacter coli isolated from U.S. retail meats reveals novel plasmid-mediated aminoglycoside resistance genes.

Authors:  Yuansha Chen; Sampa Mukherjee; Maria Hoffmann; Michael L Kotewicz; Shenia Young; Jason Abbott; Yan Luo; Maureen K Davidson; Marc Allard; Patrick McDermott; Shaohua Zhao
Journal:  Antimicrob Agents Chemother       Date:  2013-08-19       Impact factor: 5.191

3.  CEG: a database of essential gene clusters.

Authors:  Yuan-Nong Ye; Zhi-Gang Hua; Jian Huang; Nini Rao; Feng-Biao Guo
Journal:  BMC Genomics       Date:  2013-11-09       Impact factor: 3.969

4.  Morphology heterogeneity within a Campylobacter jejuni helical population: the use of calcofluor white to generate rod-shaped C. jejuni 81-176 clones and the genetic determinants responsible for differences in morphology within 11168 strains.

Authors:  Emilisa Frirdich; Jacob Biboy; Steven Huynh; Craig T Parker; Waldemar Vollmer; Erin C Gaynor
Journal:  Mol Microbiol       Date:  2017-04-24       Impact factor: 3.501

5.  Domestication of Campylobacter jejuni NCTC 11168.

Authors:  Ben Pascoe; Lisa K Williams; Jessica K Calland; Guillaume Meric; Matthew D Hitchings; Myles Dyer; Joseph Ryder; Sophie Shaw; Bruno S Lopes; Cosmin Chintoan-Uta; Elaine Allan; Ana Vidal; Catherine Fearnley; Paul Everest; Justin A Pachebat; Tristan A Cogan; Mark P Stevens; Thomas J Humphrey; Thomas S Wilkinson; Alison J Cody; Frances M Colles; Keith A Jolley; Martin C J Maiden; Norval Strachan; Bruce M Pearson; Dennis Linton; Brendan W Wren; Julian Parkhill; David J Kelly; Arnoud H M van Vliet; Ken J Forbes; Samuel K Sheppard
Journal:  Microb Genom       Date:  2019-07-16

6.  High frequency, spontaneous motA mutations in Campylobacter jejuni strain 81-176.

Authors:  Krystle L Mohawk; Frédéric Poly; Jason W Sahl; David A Rasko; Patricia Guerry
Journal:  PLoS One       Date:  2014-02-18       Impact factor: 3.240

7.  Comparative variation within the genome of Campylobacter jejuni NCTC 11168 in human and murine hosts.

Authors:  Dallas K Thomas; Abdul G Lone; L Brent Selinger; Eduardo N Taboada; Richard R E Uwiera; D Wade Abbott; G Douglas Inglis
Journal:  PLoS One       Date:  2014-02-07       Impact factor: 3.240

8.  PhasomeIt: an 'omics' approach to cataloguing the potential breadth of phase variation in the genus Campylobacter.

Authors:  Jack Aidley; Joseph J Wanford; Luke R Green; Samuel K Sheppard; Christopher D Bayliss
Journal:  Microb Genom       Date:  2018-10-23
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.