Literature DB >> 16447991

Bioinformatic insights from metagenomics through visualization.

Susan L Havre1, Bobbie-Jo Webb-Robertson, Anuj Shah, Christian Posse, Banu Gopalan, Fred J Brockman.   

Abstract

Cutting-edge biological and bioinformatics research seeks a systems perspective through the analysis of multiple types of high-throughput and other experimental data for the same sample. Systems-level analysis requires the integration and fusion of such data, typically through advanced statistics and mathematics. Visualization is a complementary computational approach that supports integration and analysis of complex data or its derivatives. We present a bioinformatics visualization prototype, Juxter, which depicts categorical information derived from or assigned to these diverse data for the purpose of comparing patterns across categorizations. The visualization allows users to easily discern correlated and anomalous patterns in the data. These patterns, which might not be detected automatically by algorithms, may reveal valuable information leading to insight and discovery. We describe the visualization and interaction capabilities and demonstrate its utility in a new field, metagenomics, which combines molecular biology and genetics to identify and characterize genetic material from multi-species microbial samples.

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Year:  2005        PMID: 16447991     DOI: 10.1109/csb.2005.19

Source DB:  PubMed          Journal:  Proc IEEE Comput Syst Bioinform Conf        ISSN: 1551-7497


  2 in total

1.  A biological treasure metagenome: pave a way for big science.

Authors:  So-Youn Park; Geun-Joong Kim
Journal:  Indian J Microbiol       Date:  2008-07-27       Impact factor: 2.461

2.  Signal processing for metagenomics: extracting information from the soup.

Authors:  Gail L Rosen; Bahrad A Sokhansanj; Robi Polikar; Mary Ann Bruns; Jacob Russell; Elaine Garbarine; Steve Essinger; Non Yok
Journal:  Curr Genomics       Date:  2009-11       Impact factor: 2.236

  2 in total

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