Literature DB >> 23100602

New reports of nuclear DNA content for 407 vascular plant taxa from the United States.

Chengke Bai1, William S Alverson, Aaron Follansbee, Donald M Waller.   

Abstract

BACKGROUND AND AIMS: The amount of DNA in an unreplicated haploid nuclear genome (C-value) ranges over several orders of magnitude among plant species and represents a key metric for comparing plant genomes. To extend previously published datasets on plant nuclear content and to characterize the DNA content of many species present in one region of North America, flow cytometry was used to estimate C-values of woody and herbaceous species collected in Wisconsin and the Upper Peninsula of Michigan, USA.
METHODS: A total of 674 samples and vouchers were collected from locations across Wisconsin and Michigan, USA. From these, C-value estimates were obtained for 514 species, subspecies and varieties of vascular plants. Nuclei were extracted from samples of these species in one of two buffers, stained with the fluorochrome propidium iodide, and an Accuri C-6 flow cytometer was used to measure fluorescence peaks relative to those of an internal standard. Replicate extractions, coefficients of variation and comparisons to published C-values in the same and related species were used to confirm the accuracy and reliability of our results. KEY RESULTS AND
CONCLUSIONS: Prime C-values for 407 taxa are provided for which no published data exist, including 390 angiosperms, two gymnosperms, ten monilophytes and five lycophytes. Non-prime reports for 107 additional taxa are also provided. The prime values represent new reports for 129 genera and five families (of 303 genera and 97 families sampled). New family C-value maxima or minima are reported for Betulaceae, Ericaceae, Ranunculaceae and Sapindaceae. These data provide the basis for phylogenetic analyses of C-value variation and future analyses of how C-values covary with other functional traits.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23100602      PMCID: PMC3503501          DOI: 10.1093/aob/mcs222

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  31 in total

1.  Mechanisms of recent genome size variation in flowering plants.

Authors:  Jeffrey L Bennetzen; Jianxin Ma; Katrien M Devos
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

2.  Correlated evolution of genome size and seed mass.

Authors:  Jeremy M Beaulieu; Angela T Moles; Ilia J Leitch; Michael D Bennett; John B Dickie; Charles A Knight
Journal:  New Phytol       Date:  2007       Impact factor: 10.151

3.  DAPI staining of fixed cells for high-resolution flow cytometry of nuclear DNA.

Authors:  F Otto
Journal:  Methods Cell Biol       Date:  1990       Impact factor: 1.441

4.  Estimation of nuclear DNA content in plants using flow cytometry.

Authors:  Jaroslav Dolezel; Johann Greilhuber; Jan Suda
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

5.  Evolution of DNA amounts across land plants (embryophyta).

Authors:  I J Leitch; D E Soltis; P S Soltis; M D Bennett
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

6.  Glycerol-treated nuclear suspensions--an efficient preservation method for flow cytometric analysis of plant samples.

Authors:  Filip Kolář; Magdalena Lučanová; Jakub Těšitel; João Loureiro; Jan Suda
Journal:  Chromosome Res       Date:  2012-02-24       Impact factor: 5.239

7.  Chromosome number evolves independently of genome size in a clade with nonlocalized centromeres (Carex: Cyperaceae).

Authors:  Kyong-Sook Chung; Andrew L Hipp; Eric H Roalson
Journal:  Evolution       Date:  2012-04-04       Impact factor: 3.694

8.  Measurements of genomic GC content in plant genomes with flow cytometry: a test for reliability.

Authors:  Petr Smarda; Petr Bureš; Jakub Smerda; Lucie Horová
Journal:  New Phytol       Date:  2011-11-04       Impact factor: 10.151

9.  Comparison of four nuclear isolation buffers for plant DNA flow cytometry.

Authors:  João Loureiro; Eleazar Rodriguez; Jaroslav Dolezel; Conceição Santos
Journal:  Ann Bot       Date:  2006-07-04       Impact factor: 4.357

Review 10.  Genome size diversity in orchids: consequences and evolution.

Authors:  I J Leitch; I Kahandawala; J Suda; L Hanson; M J Ingrouille; M W Chase; M F Fay
Journal:  Ann Bot       Date:  2009-01-24       Impact factor: 4.357

View more
  25 in total

1.  Genomic repeat abundances contain phylogenetic signal.

Authors:  Steven Dodsworth; Mark W Chase; Laura J Kelly; Ilia J Leitch; Jiří Macas; Petr Novák; Mathieu Piednoël; Hanna Weiss-Schneeweiss; Andrew R Leitch
Journal:  Syst Biol       Date:  2014-09-25       Impact factor: 15.683

2.  Biogeography and genome size evolution of the oldest extant vascular plant genus, Equisetum (Equisetaceae).

Authors:  Maarten J M Christenhusz; Mark W Chase; Michael F Fay; Oriane Hidalgo; Ilia J Leitch; Jaume Pellicer; Juan Viruel
Journal:  Ann Bot       Date:  2021-04-17       Impact factor: 4.357

3.  Genome size evolution of the extant lycophytes and ferns.

Authors:  Fa-Guo Wang; Ai-Hua Wang; Cheng-Ke Bai; Dong-Mei Jin; Li-Yun Nie; A J Harris; Le Che; Juan-Juan Wang; Shi-Yu Li; Lei Xu; Hui Shen; Yu-Feng Gu; Hui Shang; Lei Duan; Xian-Chun Zhang; Hong-Feng Chen; Yue-Hong Yan
Journal:  Plant Divers       Date:  2022-01-01

4.  Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae).

Authors:  Kevin Weitemier; Shannon C K Straub; Mark Fishbein; Aaron Liston
Journal:  PeerJ       Date:  2015-01-06       Impact factor: 2.984

5.  Generation, functional annotation and comparative analysis of black spruce (Picea mariana) ESTs: an important conifer genomic resource.

Authors:  Ishminder K Mann; Jill L Wegrzyn; Om P Rajora
Journal:  BMC Genomics       Date:  2013-10-11       Impact factor: 3.969

6.  Insights into the Sesquiterpenoid Pathway by Metabolic Profiling and De novo Transcriptome Assembly of Stem-Chicory (Cichorium intybus Cultigroup "Catalogna").

Authors:  Giulio Testone; Giovanni Mele; Elisabetta Di Giacomo; Maria Gonnella; Massimiliano Renna; Gian Carlo Tenore; Chiara Nicolodi; Giovanna Frugis; Maria Adelaide Iannelli; Giuseppe Arnesi; Alessandro Schiappa; Donato Giannino
Journal:  Front Plant Sci       Date:  2016-11-08       Impact factor: 5.753

7.  Sequencing and assembly of the 22-gb loblolly pine genome.

Authors:  Aleksey Zimin; Kristian A Stevens; Marc W Crepeau; Ann Holtz-Morris; Maxim Koriabine; Guillaume Marçais; Daniela Puiu; Michael Roberts; Jill L Wegrzyn; Pieter J de Jong; David B Neale; Steven L Salzberg; James A Yorke; Charles H Langley
Journal:  Genetics       Date:  2014-03       Impact factor: 4.562

8.  The Small Nuclear Genomes of Selaginella Are Associated with a Low Rate of Genome Size Evolution.

Authors:  Anthony E Baniaga; Nils Arrigo; Michael S Barker
Journal:  Genome Biol Evol       Date:  2016-06-03       Impact factor: 3.416

9.  Molecular phylogeny and genome size evolution of the genus Betula (Betulaceae).

Authors:  Nian Wang; Hugh A McAllister; Paul R Bartlett; Richard J A Buggs
Journal:  Ann Bot       Date:  2016-04-11       Impact factor: 4.357

10.  A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes.

Authors:  Jugpreet Singh; Scott R Kalberer; Vikas Belamkar; Teshale Assefa; Matthew N Nelson; Andrew D Farmer; William J Blackmon; Steven B Cannon
Journal:  Theor Appl Genet       Date:  2017-10-25       Impact factor: 5.699

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.