Literature DB >> 22362177

Glycerol-treated nuclear suspensions--an efficient preservation method for flow cytometric analysis of plant samples.

Filip Kolář1, Magdalena Lučanová, Jakub Těšitel, João Loureiro, Jan Suda.   

Abstract

Flow cytometry (FCM) has been widely used in plant science to determine the amount of nuclear DNA, either in absolute units or in relative terms, as an indicator of ploidy. The requirement for fresh material in some applications, however, limits the value of FCM in field research, including plant biosystematics, ecology and population biology. Dried plant samples have proven to be a suitable alternative in some cases (large-scale ploidy screening) although tissue dehydration is often associated with a decrease in the quality of FCM analysis. The present study tested, using time-scale laboratory and in situ field experiments, the applicability of glycerol-treated nuclear suspension for DNA flow cytometry. We demonstrate that plant nuclei preserved in ice-cold buffer + glycerol solution remain intact for at least a few weeks and provide estimates of nuclear DNA content that are highly comparable and of similar quality to those obtained from fresh tissue. The protocol is compatible with both DAPI and propidium iodide staining, and allows not only the determination of ploidy level but also genome size in absolute units. Despite its higher laboriousness, glycerol-preserved nuclei apparently represent the most reliable way of sample preservation for genome size research. We assume that the protocol will provide a vital alternative to other preservation methods, especially when stringent criteria on the quality of FCM analysis are required.

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Year:  2012        PMID: 22362177     DOI: 10.1007/s10577-012-9277-0

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  16 in total

Review 1.  Plant DNA flow cytometry and estimation of nuclear genome size.

Authors:  Jaroslav Dolezel; Jan Bartos
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

2.  Circumpolar phylogeography of Juncus biglumis (Juncaceae) inferred from AFLP fingerprints, cpDNA sequences, nuclear DNA content and chromosome numbers.

Authors:  Peter Schönswetter; Jan Suda; Magnus Popp; Hanna Weiss-Schneeweiss; Christian Brochmann
Journal:  Mol Phylogenet Evol       Date:  2006-07-06       Impact factor: 4.286

3.  DAPI staining of fixed cells for high-resolution flow cytometry of nuclear DNA.

Authors:  F Otto
Journal:  Methods Cell Biol       Date:  1990       Impact factor: 1.441

4.  Ecological segregation drives fine-scale cytotype distribution of Senecio carniolicus in the Eastern Alps.

Authors:  Karl Hülber; Michaela Sonnleitner; Ruth Flatscher; Andreas Berger; Rainer Dobrovsky; Sophie Niessner; Thomas Nigl; Gerald M Schneeweiss; Magdalena Kubešová; Jana Rauchová; Jan Suda; Peter Schönswetter
Journal:  Preslia       Date:  2009       Impact factor: 4.167

5.  Reliable DNA ploidy determination in dehydrated tissues of vascular plants by DAPI flow cytometry--new prospects for plant research.

Authors:  Jan Suda; Pavel Trávnícek
Journal:  Cytometry A       Date:  2006-04       Impact factor: 4.355

6.  Estimation of nuclear DNA content in plants using flow cytometry.

Authors:  Jaroslav Dolezel; Johann Greilhuber; Jan Suda
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

7.  Estimation of relative nuclear DNA content in dehydrated plant tissues by flow cytometry.

Authors:  Jan Suda; Pavel Trávnícek
Journal:  Curr Protoc Cytom       Date:  2006-11

8.  Sympatric diploid and hexaploid cytotypes of Senecio carniolicus (Asteraceae) in the Eastern Alps are separated along an altitudinal gradient.

Authors:  Peter Schönswetter; Margarita Lachmayer; Christian Lettner; David Prehsler; Stefanie Rechnitzer; Dieter S Reich; Michaela Sonnleitner; Iris Wagner; Karl Hülber; Gerald M Schneeweiss; Pavel Trávnícek; Jan Suda
Journal:  J Plant Res       Date:  2007-10-05       Impact factor: 2.629

9.  Flow cytometric and microscopic analysis of the effect of tannic acid on plant nuclei and estimation of DNA content.

Authors:  João Loureiro; Eleazar Rodriguez; Jaroslav Dolezel; Conceição Santos
Journal:  Ann Bot       Date:  2006-07-04       Impact factor: 4.357

10.  Allopolyploid origins of the Galeopsis tetraploids--revisiting Müntzing's classical textbook example using molecular tools.

Authors:  Mika Bendiksby; Andreas Tribsch; Liv Borgen; Pavel Trávníček; Anne K Brysting
Journal:  New Phytol       Date:  2011-05-20       Impact factor: 10.151

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  3 in total

1.  New reports of nuclear DNA content for 407 vascular plant taxa from the United States.

Authors:  Chengke Bai; William S Alverson; Aaron Follansbee; Donald M Waller
Journal:  Ann Bot       Date:  2012-10-24       Impact factor: 4.357

2.  Cytotype diversity and genome size variation in Knautia (Caprifoliaceae, Dipsacoideae).

Authors:  Božo Frajman; Ivana Rešetnik; Hanna Weiss-Schneeweiss; Friedrich Ehrendorfer; Peter Schönswetter
Journal:  BMC Evol Biol       Date:  2015-07-17       Impact factor: 3.260

3.  The effects of fresh and rapid desiccated tissue on estimates of Ophiopogoneae genome size.

Authors:  Guangyan Wang; Yongping Yang
Journal:  Plant Divers       Date:  2016-08-04
  3 in total

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