Literature DB >> 23085151

Polypeptide chain collapse and protein folding.

Jayant B Udgaonkar1.   

Abstract

Polypeptide chain collapse is an integral component of a protein folding reaction. In this review, experimental characterization of the interplay of polypeptide chain collapse, secondary structure formation, consolidation of the hydrophobic core and the development of tertiary interactions, is scrutinized. In particular, the polypeptide chain collapse reaction is examined in the context of the three phenomenological models of protein folding - the hydrophobic collapse model, the framework model and the nucleation condensation model - which describe different ways by which polypeptide chains are able to fold in biologically relevant time-scales.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23085151     DOI: 10.1016/j.abb.2012.10.003

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  16 in total

1.  Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation.

Authors:  Alex S Holehouse; Kanchan Garai; Nicholas Lyle; Andreas Vitalis; Rohit V Pappu
Journal:  J Am Chem Soc       Date:  2015-02-23       Impact factor: 15.419

2.  A quantitative measure for protein conformational heterogeneity.

Authors:  Nicholas Lyle; Rahul K Das; Rohit V Pappu
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

3.  Folding of a large protein at high structural resolution.

Authors:  Benjamin T Walters; Leland Mayne; James R Hinshaw; Tobin R Sosnick; S Walter Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

4.  Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.

Authors:  Gustavo Fuertes; Niccolò Banterle; Kiersten M Ruff; Aritra Chowdhury; Davide Mercadante; Christine Koehler; Michael Kachala; Gemma Estrada Girona; Sigrid Milles; Ankur Mishra; Patrick R Onck; Frauke Gräter; Santiago Esteban-Martín; Rohit V Pappu; Dmitri I Svergun; Edward A Lemke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

5.  Translation and folding of single proteins in real time.

Authors:  Florian Wruck; Alexandros Katranidis; Knud H Nierhaus; Georg Büldt; Martin Hegner
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

Review 6.  How cooperative are protein folding and unfolding transitions?

Authors:  Pooja Malhotra; Jayant B Udgaonkar
Journal:  Protein Sci       Date:  2016-09-13       Impact factor: 6.725

Review 7.  Hypothesis: structural heterogeneity of the unfolded proteins originating from the coupling of the local clusters and the long-range distance distribution.

Authors:  Satoshi Takahashi; Aya Yoshida; Hiroyuki Oikawa
Journal:  Biophys Rev       Date:  2018-02-14

Review 8.  Emerging consensus on the collapse of unfolded and intrinsically disordered proteins in water.

Authors:  Robert B Best
Journal:  Curr Opin Struct Biol       Date:  2019-12-02       Impact factor: 6.809

9.  Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity.

Authors:  Rita Pancsa; Daniele Raimondi; Elisa Cilia; Wim F Vranken
Journal:  Biophys J       Date:  2016-02-02       Impact factor: 4.033

10.  Friction-Limited Folding of Disulfide-Reduced Monomeric SOD1.

Authors:  Noah R Cohen; Can Kayatekin; Jill A Zitzewitz; Osman Bilsel; C R Matthews
Journal:  Biophys J       Date:  2020-03-12       Impact factor: 4.033

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