Literature DB >> 23084572

The function and evolution of the Aspergillus genome.

John G Gibbons1, Antonis Rokas.   

Abstract

Species in the filamentous fungal genus Aspergillus display a wide diversity of lifestyles and are of great importance to humans. The decoding of genome sequences from a dozen species that vary widely in their degree of evolutionary affinity has galvanized studies of the function and evolution of the Aspergillus genome in clinical, industrial, and agricultural environments. Here, we synthesize recent key findings that shed light on the architecture of the Aspergillus genome, on the molecular foundations of the genus' astounding dexterity and diversity in secondary metabolism, and on the genetic underpinnings of virulence in Aspergillus fumigatus, one of the most lethal fungal pathogens. Many of these insights dramatically expand our knowledge of fungal and microbial eukaryote genome evolution and function and argue that Aspergillus constitutes a superb model clade for the study of functional and comparative genomics.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23084572      PMCID: PMC3534798          DOI: 10.1016/j.tim.2012.09.005

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  91 in total

1.  Comparative and functional characterization of intragenic tandem repeats in 10 Aspergillus genomes.

Authors:  John G Gibbons; Antonis Rokas
Journal:  Mol Biol Evol       Date:  2008-12-04       Impact factor: 16.240

Review 2.  Sexual structures in Aspergillus: morphology, importance and genomics.

Authors:  David M Geiser
Journal:  Med Mycol       Date:  2008-06-04       Impact factor: 4.076

3.  Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq.

Authors:  Jiujiang Yu; Natalie D Fedorova; Beverly G Montalbano; Deepak Bhatnagar; Thomas E Cleveland; Joan W Bennett; William C Nierman
Journal:  FEMS Microbiol Lett       Date:  2011-07-14       Impact factor: 2.742

4.  Genomic mining for Aspergillus natural products.

Authors:  Jin Woo Bok; Dirk Hoffmeister; Lori A Maggio-Hall; Renato Murillo; Jeremy D Glasner; Nancy P Keller
Journal:  Chem Biol       Date:  2006-01

5.  Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae.

Authors:  David M Geiser; Cécile Gueidan; Jolanta Miadlikowska; François Lutzoni; Frank Kauff; Valérie Hofstetter; Emily Fraker; Conrad L Schoch; Leif Tibell; Wendy A Untereiner; André Aptroot
Journal:  Mycologia       Date:  2006 Nov-Dec       Impact factor: 2.696

6.  Globally panmictic population structure in the opportunistic fungal pathogen Aspergillus sydowii.

Authors:  Krystal L Rypien; Jason P Andras; C Drew Harvell
Journal:  Mol Ecol       Date:  2008-09       Impact factor: 6.185

7.  Transcriptional response of yeast to aflatoxin B1: recombinational repair involving RAD51 and RAD1.

Authors:  Monika U Keller-Seitz; Ulrich Certa; Christian Sengstag; Friedrich E Würgler; Mingzeng Sun; Michael Fasullo
Journal:  Mol Biol Cell       Date:  2004-06-23       Impact factor: 4.138

8.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

9.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Eric W Sayers
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

10.  Elusive origins of the extra genes in Aspergillus oryzae.

Authors:  Nora Khaldi; Kenneth H Wolfe
Journal:  PLoS One       Date:  2008-08-22       Impact factor: 3.240

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  20 in total

1.  Deep convolutional neural network: a novel approach for the detection of Aspergillus fungi via stereomicroscopy.

Authors:  Haozhong Ma; Jinshan Yang; Xiaolu Chen; Xinyu Jiang; Yimin Su; Shanlei Qiao; Guowei Zhong
Journal:  J Microbiol       Date:  2021-03-29       Impact factor: 3.422

2.  Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

Authors:  Ronald P de Vries; Robert Riley; Ad Wiebenga; Guillermo Aguilar-Osorio; Sotiris Amillis; Cristiane Akemi Uchima; Gregor Anderluh; Mojtaba Asadollahi; Marion Askin; Kerrie Barry; Evy Battaglia; Özgür Bayram; Tiziano Benocci; Susanna A Braus-Stromeyer; Camila Caldana; David Cánovas; Gustavo C Cerqueira; Fusheng Chen; Wanping Chen; Cindy Choi; Alicia Clum; Renato Augusto Corrêa Dos Santos; André Ricardo de Lima Damásio; George Diallinas; Tamás Emri; Erzsébet Fekete; Michel Flipphi; Susanne Freyberg; Antonia Gallo; Christos Gournas; Rob Habgood; Matthieu Hainaut; María Laura Harispe; Bernard Henrissat; Kristiina S Hildén; Ryan Hope; Abeer Hossain; Eugenia Karabika; Levente Karaffa; Zsolt Karányi; Nada Kraševec; Alan Kuo; Harald Kusch; Kurt LaButti; Ellen L Lagendijk; Alla Lapidus; Anthony Levasseur; Erika Lindquist; Anna Lipzen; Antonio F Logrieco; Andrew MacCabe; Miia R Mäkelä; Iran Malavazi; Petter Melin; Vera Meyer; Natalia Mielnichuk; Márton Miskei; Ákos P Molnár; Giuseppina Mulé; Chew Yee Ngan; Margarita Orejas; Erzsébet Orosz; Jean Paul Ouedraogo; Karin M Overkamp; Hee-Soo Park; Giancarlo Perrone; Francois Piumi; Peter J Punt; Arthur F J Ram; Ana Ramón; Stefan Rauscher; Eric Record; Diego Mauricio Riaño-Pachón; Vincent Robert; Julian Röhrig; Roberto Ruller; Asaf Salamov; Nadhira S Salih; Rob A Samson; Erzsébet Sándor; Manuel Sanguinetti; Tabea Schütze; Kristina Sepčić; Ekaterina Shelest; Gavin Sherlock; Vicky Sophianopoulou; Fabio M Squina; Hui Sun; Antonia Susca; Richard B Todd; Adrian Tsang; Shiela E Unkles; Nathalie van de Wiele; Diana van Rossen-Uffink; Juliana Velasco de Castro Oliveira; Tammi C Vesth; Jaap Visser; Jae-Hyuk Yu; Miaomiao Zhou; Mikael R Andersen; David B Archer; Scott E Baker; Isabelle Benoit; Axel A Brakhage; Gerhard H Braus; Reinhard Fischer; Jens C Frisvad; Gustavo H Goldman; Jos Houbraken; Berl Oakley; István Pócsi; Claudio Scazzocchio; Bernhard Seiboth; Patricia A vanKuyk; Jennifer Wortman; Paul S Dyer; Igor V Grigoriev
Journal:  Genome Biol       Date:  2017-02-14       Impact factor: 13.583

3.  Transcriptomic analysis of temperature responses of Aspergillus kawachii during barley koji production.

Authors:  Taiki Futagami; Kazuki Mori; Shotaro Wada; Hiroko Ida; Yasuhiro Kajiwara; Hideharu Takashita; Kosuke Tashiro; Osamu Yamada; Toshiro Omori; Satoru Kuhara; Masatoshi Goto
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

4.  Zombie Cells, Composite Cells of Fungal-Human Keratinocytes of Plantar Hyperkeratosis-Like Lesions.

Authors:  Charles Xiaoxiang Zhu; Xianghong Li; Xiaogang Tan; Guodong Wu
Journal:  Mycopathologia       Date:  2019-08-02       Impact factor: 2.574

5.  The Aspergillus fumigatus sitA Phosphatase Homologue Is Important for Adhesion, Cell Wall Integrity, Biofilm Formation, and Virulence.

Authors:  Vinícius Leite Pedro Bom; Patrícia Alves de Castro; Lizziane K Winkelströter; Marçal Marine; Juliana I Hori; Leandra Naira Zambelli Ramalho; Thaila Fernanda dos Reis; Maria Helena S Goldman; Neil Andrew Brown; Ranjith Rajendran; Gordon Ramage; Louise A Walker; Carol A Munro; Marina Campos Rocha; Iran Malavazi; Daisuke Hagiwara; Gustavo H Goldman
Journal:  Eukaryot Cell       Date:  2015-04-24

6.  The 14-3-3 Protein Homolog ArtA Regulates Development and Secondary Metabolism in the Opportunistic Plant Pathogen Aspergillus flavus.

Authors:  Beatriz A Ibarra; Jessica M Lohmar; Timothy Satterlee; Taylor McDonald; Jeffrey W Cary; Ana M Calvo
Journal:  Appl Environ Microbiol       Date:  2018-02-14       Impact factor: 4.792

7.  Insecticidal Activity of Ethyl Acetate Extracts from Culture Filtrates of Mangrove Fungal Endophytes.

Authors:  Silva Abraham; Adi Basukriadi; Suyanto Pawiroharsono; Wellyzar Sjamsuridzal
Journal:  Mycobiology       Date:  2015-06-30       Impact factor: 1.858

8.  Extensive intra-kingdom horizontal gene transfer converging on a fungal fructose transporter gene.

Authors:  Marco A Coelho; Carla Gonçalves; José Paulo Sampaio; Paula Gonçalves
Journal:  PLoS Genet       Date:  2013-06-20       Impact factor: 5.917

9.  Genome-scale phylogenetic analysis finds extensive gene transfer among fungi.

Authors:  Gergely J Szöllősi; Adrián Arellano Davín; Eric Tannier; Vincent Daubin; Bastien Boussau
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-26       Impact factor: 6.237

10.  Motif-independent prediction of a secondary metabolism gene cluster using comparative genomics: application to sequenced genomes of Aspergillus and ten other filamentous fungal species.

Authors:  Itaru Takeda; Myco Umemura; Hideaki Koike; Kiyoshi Asai; Masayuki Machida
Journal:  DNA Res       Date:  2014-04-11       Impact factor: 4.458

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