Literature DB >> 23080525

Analysis of simulated fluorescence intensities decays by a new maximum entropy method algorithm.

Rosario Esposito1, Carlo Altucci, Raffaele Velotta.   

Abstract

A new algorithm for the Maximum Entropy Method (MEM) is proposed for recovering the lifetime distribution in time-resolved fluorescence decays. The procedure is based on seeking the distribution that maximizes the Skilling entropy function subjected to the chi-squared constraint χ(2) ~ 1 through iterative linear approximations, LU decomposition of the Hessian matrix of the lagrangian problem and the Golden Section Search for backtracking. The accuracy of this algorithm has been investigated through comparisons with simulated fluorescence decays both of narrow and broad lifetime distributions. The proposed approach is capable to analyse datasets of up to 4,096 points with a discretization ranging from 100 to 1,000 lifetimes. A good agreement with non linear fitting estimates has been observed when the method has been applied to multi-exponential decays. Remarkable results have been also obtained for the broad lifetime distributions where the position is recovered with high accuracy and the distribution width is estimated within 3%. These results indicate that the procedure proposed generates MEM lifetime distributions that can be used to quantify the real heterogeneity of lifetimes in a sample.

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Year:  2012        PMID: 23080525      PMCID: PMC3556474          DOI: 10.1007/s10895-012-1135-0

Source DB:  PubMed          Journal:  J Fluoresc        ISSN: 1053-0509            Impact factor:   2.217


  11 in total

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2.  Analyzing the distribution of decay constants in pulse-fluorimetry using the maximum entropy method.

Authors:  A K Livesey; J C Brochon
Journal:  Biophys J       Date:  1987-11       Impact factor: 4.033

3.  Maximum entropy analysis of analytically simulated complex fluorescence decays.

Authors:  Jaroslav Vecer; Petr Herman
Journal:  J Fluoresc       Date:  2010-01-12       Impact factor: 2.217

4.  Monitoring membrane protein conformational heterogeneity by fluorescence lifetime distribution analysis using the maximum entropy method.

Authors:  Sourav Haldar; Mamata Kombrabail; G Krishnamoorthy; Amitabha Chattopadhyay
Journal:  J Fluoresc       Date:  2009-10-09       Impact factor: 2.217

5.  Maximum entropy method for frequency domain fluorescence lifetime analysis. 1. Effects of frequency range and random noise.

Authors:  J M Shaver; L B McGown
Journal:  Anal Chem       Date:  1996-01-01       Impact factor: 6.986

6.  Analysis of kinetics using a hybrid maximum-entropy/nonlinear-least-squares method: application to protein folding.

Authors:  Peter J Steinbach; Roxana Ionescu; C Robert Matthews
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

Review 7.  Time-resolved fluorescence of proteins.

Authors:  J M Beechem; L Brand
Journal:  Annu Rev Biochem       Date:  1985       Impact factor: 23.643

8.  Maximum entropy method of data analysis in time-resolved spectroscopy.

Authors:  J C Brochon
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

9.  Tryptophan-lipid interactions in membrane protein folding probed by ultraviolet resonance Raman and fluorescence spectroscopy.

Authors:  Katheryn M Sanchez; Guipeun Kang; Beijing Wu; Judy E Kim
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

10.  Picosecond tryptophan fluorescence of thioredoxin: evidence for discrete species in slow exchange.

Authors:  F Mérola; R Rigler; A Holmgren; J C Brochon
Journal:  Biochemistry       Date:  1989-04-18       Impact factor: 3.162

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  1 in total

1.  Quantitative sampling of conformational heterogeneity of a DNA hairpin using molecular dynamics simulations and ultrafast fluorescence spectroscopy.

Authors:  Karine Voltz; Jérémie Léonard; Patricia Tourón Touceda; Jamie Conyard; Ziyad Chaker; Annick Dejaegere; Julien Godet; Yves Mély; Stefan Haacke; Roland H Stote
Journal:  Nucleic Acids Res       Date:  2016-02-20       Impact factor: 16.971

  1 in total

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