Literature DB >> 20066479

Maximum entropy analysis of analytically simulated complex fluorescence decays.

Jaroslav Vecer1, Petr Herman.   

Abstract

We tested a Maximum Entropy Method developed for oversampled data (SVD-MEM) on complex analytically simulated exponential decay data consisting of both noisy and noiseless multi-exponential fluorescence decay curves. We observed recovery of simulated parameters for three sets of data: a decay containing three exponential functions in both intensity and anisotropy curves, a set of intensity decays composed of 4, 5 and 6 exponential functions, and a decay characterized by a Gaussian lifetime distribution. The SVD-MEM fitting of the noiseless data returned the simulated parameters with the high accuracy. Noise added to the data affected recovery of the parameters in dependence on a data complexity. At selected realistic noise levels we obtained a good recovery of simulated parameters for all tested data sets. Decay parameters recovered from decays containing discrete lifetime components were almost independent of the value of the entropy scaling parameter γ used in the maximization procedure when it changed across the main peak of its posterior probability. A correct recovery of the Gaussian shaped lifetime distribution required selection of the γ-factor which was by several orders of magnitude larger than its most probable value to avoid a band splitting. © Springer Science+Business Media, LLC 2010

Entities:  

Year:  2010        PMID: 20066479     DOI: 10.1007/s10895-009-0589-1

Source DB:  PubMed          Journal:  J Fluoresc        ISSN: 1053-0509            Impact factor:   2.217


  1 in total

1.  Maximum entropy method of data analysis in time-resolved spectroscopy.

Authors:  J C Brochon
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

  1 in total
  9 in total

1.  Structural Characterization of Phosducin and Its Complex with the 14-3-3 Protein.

Authors:  Miroslava Kacirova; Dalibor Kosek; Alan Kadek; Petr Man; Jaroslav Vecer; Petr Herman; Veronika Obsilova; Tomas Obsil
Journal:  J Biol Chem       Date:  2015-05-13       Impact factor: 5.157

2.  Single-Molecule Analysis of Cytochrome c Folding by Monitoring the Lifetime of an Attached Fluorescent Probe.

Authors:  Andrea J Lee; Wesley B Asher; Harry A Stern; Kara L Bren; Todd D Krauss
Journal:  J Phys Chem Lett       Date:  2013-08-15       Impact factor: 6.475

3.  Structural basis for the 14-3-3 protein-dependent inhibition of the regulator of G protein signaling 3 (RGS3) function.

Authors:  Lenka Rezabkova; Petr Man; Petr Novak; Petr Herman; Jaroslav Vecer; Veronika Obsilova; Tomas Obsil
Journal:  J Biol Chem       Date:  2011-10-25       Impact factor: 5.157

4.  Nedd4-2 binding to 14-3-3 modulates the accessibility of its catalytic site and WW domains.

Authors:  Rohit Joshi; Pavel Pohl; Dita Strachotova; Petr Herman; Tomas Obsil; Veronika Obsilova
Journal:  Biophys J       Date:  2022-02-18       Impact factor: 3.699

5.  14-3-3 proteins inactivate DAPK2 by promoting its dimerization and protecting key regulatory phosphosites.

Authors:  Matej Horvath; Olivia Petrvalska; Petr Herman; Veronika Obsilova; Tomas Obsil
Journal:  Commun Biol       Date:  2021-08-19

6.  Biophysical and structural characterization of the thioredoxin-binding domain of protein kinase ASK1 and its interaction with reduced thioredoxin.

Authors:  Dalibor Kosek; Salome Kylarova; Katarina Psenakova; Lenka Rezabkova; Petr Herman; Jaroslav Vecer; Veronika Obsilova; Tomas Obsil
Journal:  J Biol Chem       Date:  2014-07-17       Impact factor: 5.157

7.  Analysis of simulated fluorescence intensities decays by a new maximum entropy method algorithm.

Authors:  Rosario Esposito; Carlo Altucci; Raffaele Velotta
Journal:  J Fluoresc       Date:  2012-10-19       Impact factor: 2.217

8.  Structural Insight into the 14-3-3 Protein-dependent Inhibition of Protein Kinase ASK1 (Apoptosis Signal-regulating kinase 1).

Authors:  Olivia Petrvalska; Dalibor Kosek; Zdenek Kukacka; Zdenek Tosner; Petr Man; Jaroslav Vecer; Petr Herman; Veronika Obsilova; Tomas Obsil
Journal:  J Biol Chem       Date:  2016-08-11       Impact factor: 5.157

9.  Structural modulation of phosducin by phosphorylation and 14-3-3 protein binding.

Authors:  Lenka Rezabkova; Miroslava Kacirova; Miroslav Sulc; Petr Herman; Jaroslav Vecer; Miroslav Stepanek; Veronika Obsilova; Tomas Obsil
Journal:  Biophys J       Date:  2012-11-07       Impact factor: 4.033

  9 in total

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