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Literature DB >> 23078661

Clinical integration of next-generation sequencing technology.

R R Gullapalli¹, M Lyons-Weiler, P Petrosko, R Dhir, M J Becich, W A LaFramboise.

Abstract

Recent advances in next-generation sequencing (NGS) methods and technology have substantially reduced costs and operational complexity leading to production of benchtop sequencers and commercial software solutions for implementation in small research and clinical laboratories. This article addresses requirements and limitations to successful implementation of these systems, including (1) calibration and validation of the instrumentation, experimental paradigm, and primary readout, (2) secure data transfer, storage, and secondary processing, (3) implementation of software tools for targeted analysis, and (4) training of research and clinical personnel to evaluate data fidelity and interpret the molecular significance of the genomic output.

Entities: Chemical Disease Mutation Species

Mesh：

Year: 2012 PMID： 23078661 PMCID： PMC3479671 DOI： 10.1016/j.cll.2012.07.005

Source DB: PubMed Journal: Clin Lab Med ISSN： 0272-2712 Impact factor: 1.935

54 in total

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Journal: Nature Date: 2010-04-15 Impact factor: 49.962

8. EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy.

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Authors: J Gulcher; K Stefansson
Journal: Clin Chem Lab Med Date: 1998-08 Impact factor: 3.694

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Authors: Marc J van de Vijver; Yudong D He; Laura J van't Veer; Hongyue Dai; Augustinus A M Hart; Dorien W Voskuil; George J Schreiber; Johannes L Peterse; Chris Roberts; Matthew J Marton; Mark Parrish; Douwe Atsma; Anke Witteveen; Annuska Glas; Leonie Delahaye; Tony van der Velde; Harry Bartelink; Sjoerd Rodenhuis; Emiel T Rutgers; Stephen H Friend; René Bernards
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17 in total

Review 1. Endorsing good quality assurance practices in molecular pathology: risks and recommendations for diagnostic laboratories and external quality assessment providers.

Authors: Lien Tembuyser; Elisabeth M C Dequeker
Journal: Virchows Arch Date: 2015-08-26 Impact factor: 4.064

2. Fragmentation of genomic DNA using microwave irradiation.

Authors: Yu Yang; Jun Hang
Journal: J Biomol Tech Date: 2013-07

3. Evaluation of Commercial Next-Generation Sequencing Bioinformatics Software Solutions.

Authors: Rama R Gullapalli
Journal: J Mol Diagn Date: 2019-11-18 Impact factor: 5.568

4. Targeted Sequencing of Circulating Cell Free DNA Can Be Used to Monitor Therapeutic Efficacy of Tyrosine Kinase Inhibitors in Non-small Cell Lung Cancer Patients.

Authors: Chiuan-Chian Chiou; Chih-Liang Wang; Ji-Dung Luo; Chien-Ying Liu; How-Wen Ko; Cheng-Ta Yang
Journal: Cancer Genomics Proteomics Date: 2020 Jul-Aug Impact factor: 4.069

5. Next-Generation Sequencing to Help Monitor Patients Infected with HIV: Ready for Clinical Use?

Authors: Richard M Gibson; Christine L Schmotzer; Miguel E Quiñones-Mateu
Journal: Curr Infect Dis Rep Date: 2014-04 Impact factor: 3.725

Review 6. [Genetics of neuropathies].

Authors: B Gess; A Schirmacher; P Young
Journal: Nervenarzt Date: 2013-02 Impact factor: 1.214

10. Non-invasive Analysis of Genomic Copy Number Variation in Patients with Hepatocellular Carcinoma by Next Generation DNA Sequencing.

Authors: Hongtao Xu; Xia Zhu; Zulong Xu; Yue Hu; Shiping Bo; Tongjing Xing; Kuichun Zhu
Journal: J Cancer Date: 2015-01-18 Impact factor: 4.207