Literature DB >> 23074356

Improving class separability using extended pixel planes: a comparative study.

Nikita V Orlov1, D Mark Eckley, Lior Shamir, Ilya G Goldberg.   

Abstract

In this work we explored class separability in feature spaces built on extended representations of pixel planes (EPP) produced using scale pyramid, subband pyramid, and image transforms. The image transforms included Chebyshev, Fourier, wavelets, gradient and Laplacian; we also utilized transform combinations, including Fourier, Chebyshev and wavelets of the gradient transform, as well as Fourier of the Laplacian transform. We demonstrate that all three types of EPP promote class separation. We also explored the effect of EPP on suboptimal feature libraries, using only textural features in one case and only Haralick features in another. The effect of EPP was especially clear for these suboptimal libraries, where the transform-based representations were found to increase separability to a greater extent than scale or subband pyramids. EPP can be particularly useful in new applications where optimal features have not yet been developed.

Entities:  

Year:  2012        PMID: 23074356      PMCID: PMC3470430          DOI: 10.1007/s00138-011-0349-5

Source DB:  PubMed          Journal:  Mach Vis Appl        ISSN: 0932-8092            Impact factor:   2.012


  15 in total

1.  A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells.

Authors:  M V Boland; R F Murphy
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

2.  Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.

Authors:  Hanchuan Peng; Fuhui Long; Chris Ding
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2005-08       Impact factor: 6.226

3.  WND-CHARM: Multi-purpose image classification using compound image transforms.

Authors:  Nikita Orlov; Lior Shamir; Tomasz Macura; Josiah Johnston; D Mark Eckley; Ilya G Goldberg
Journal:  Pattern Recognit Lett       Date:  2008-01       Impact factor: 3.756

4.  Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images.

Authors:  M V Boland; M K Markey; R F Murphy
Journal:  Cytometry       Date:  1998-11-01

5.  Automatic classification of lymphoma images with transform-based global features.

Authors:  Nikita V Orlov; Wayne W Chen; David Mark Eckley; Tomasz J Macura; Lior Shamir; Elaine S Jaffe; Ilya G Goldberg
Journal:  IEEE Trans Inf Technol Biomed       Date:  2010-07

6.  IICBU 2008: a proposed benchmark suite for biological image analysis.

Authors:  Lior Shamir; Nikita Orlov; David Mark Eckley; Tomasz J Macura; Ilya G Goldberg
Journal:  Med Biol Eng Comput       Date:  2008-07-31       Impact factor: 2.602

7.  Automated interpretation of protein subcellular location patterns: implications for early cancer detection and assessment.

Authors:  Robert F Murphy
Journal:  Ann N Y Acad Sci       Date:  2004-05       Impact factor: 5.691

8.  Biometric identification using knee X-rays.

Authors:  Lior Shamir; Shari Ling; Salim Rahimi; Luigi Ferrucci; Ilya G Goldberg
Journal:  Int J Biom       Date:  2009-01-01

Review 9.  Pattern recognition software and techniques for biological image analysis.

Authors:  Lior Shamir; John D Delaney; Nikita Orlov; D Mark Eckley; Ilya G Goldberg
Journal:  PLoS Comput Biol       Date:  2010-11-24       Impact factor: 4.475

10.  Quantitative image analysis reveals distinct structural transitions during aging in Caenorhabditis elegans tissues.

Authors:  Josiah Johnston; Wendy B Iser; David K Chow; Ilya G Goldberg; Catherine A Wolkow
Journal:  PLoS One       Date:  2008-07-30       Impact factor: 3.240

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  3 in total

1.  Transcriptome States Reflect Imaging of Aging States.

Authors:  D Mark Eckley; Christopher E Coletta; Nikita V Orlov; Mark A Wilson; Wendy Iser; Paul Bastian; Elin Lehrmann; Yonqing Zhang; Kevin G Becker; Ilya G Goldberg
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2018-06-14       Impact factor: 6.053

2.  Differential Aging Signals in Abdominal CT Scans.

Authors:  Nikita V Orlov; Sokratis Makrogiannis; Luigi Ferrucci; Ilya G Goldberg
Journal:  Acad Radiol       Date:  2017-09-15       Impact factor: 3.173

3.  Computational image analysis of colony and nuclear morphology to evaluate human induced pluripotent stem cells.

Authors:  Kazuaki Tokunaga; Noriko Saitoh; Ilya G Goldberg; Chiyomi Sakamoto; Yoko Yasuda; Yoshinori Yoshida; Shinya Yamanaka; Mitsuyoshi Nakao
Journal:  Sci Rep       Date:  2014-11-11       Impact factor: 4.379

  3 in total

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