Literature DB >> 23067206

Evolving the [myoglobin, cytochrome b(5)] complex from dynamic toward simple docking: charging the electron transfer reactive patch.

Ethan N Trana1, Judith M Nocek, Amanda K Knutson, Brian M Hoffman.   

Abstract

We describe photoinitiated electron transfer (ET) from a suite of Zn-substituted myoglobin (Mb) variants to cytochrome b(5) (b(5)). An electrostatic interface redesign strategy has led to the introduction of positive charges into the vicinity of the heme edge through D/E → K charge-reversal mutation combinations at "hot spot" residues (D44, D60, and E85), augmented by the elimination of negative charges from Mb or b(5) by neutralization of heme propionates. These variations create an unprecedentedly large range in the product of the ET partners' total charges (-5 < -q(Mb)q(b(5)) < 40). The binding affinity (K(a)) increases 1000-fold as -q(Mb)q(b(5)) increases through this range and exhibits a surprisingly simple, exponential dependence on -q(Mb)q(b(5)). This is explained in terms of electrostatic interactions between a "charged reactive patch" (crp) on each partner's surface, defined as a compact region around the heme edge that (i) contains the total protein charge of each variant and (ii) encompasses a major fraction of the "reactive region" (Rr) comprising surface atoms with large matrix elements for electron tunneling to the heme. As -q(Mb)q(b(5)) increases, the complex undergoes a transition from fast to slow-exchange dynamics on the triplet ET time scale, with a correlated progression in the rate constants for intracomplex (k(et)) and bimolecular (k(2)) ET. This progression is analyzed by integrating the crp and Rr descriptions of ET into the textbook steady-state treatment of reversible binding between partners that undergo intracomplex ET and found to encompass the full range of behaviors predicted by the model. The generality of this approach is demonstrated by its application to the extensive body of data for the ET complex between the photosynthetic reaction center and cytochrome c(2). Deviations from this model also are discussed.

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Year:  2012        PMID: 23067206      PMCID: PMC3549022          DOI: 10.1021/bi301134f

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  50 in total

1.  Interactions between cytochrome c2 and photosynthetic reaction center from Rhodobacter sphaeroides: changes in binding affinity and electron transfer rate due to mutation of interfacial hydrophobic residues are strongly correlated.

Authors:  Xiao-Min Gong; Mark L Paddock; Melvin Y Okamura
Journal:  Biochemistry       Date:  2003-12-16       Impact factor: 3.162

2.  Computational alanine scanning of protein-protein interfaces.

Authors:  Tanja Kortemme; David E Kim; David Baker
Journal:  Sci STKE       Date:  2004-02-03

3.  Definition of cytochrome c binding domains by chemical modification: kinetics of reaction with beef mitochondrial reductase and functional organization of the respiratory chain.

Authors:  S H Speck; S Ferguson-Miller; N Osheroff; E Margoliash
Journal:  Proc Natl Acad Sci U S A       Date:  1979-01       Impact factor: 11.205

4.  Definition of cytochrome c binding domains by chemical modification. Interaction of horse cytochrome c with beef sulfite oxidase and analysis of steady state kinetics.

Authors:  S H Speck; W H Koppenol; J K Dethmers; N Osheroff; E Margoliash; K V Rajagopalan
Journal:  J Biol Chem       Date:  1981-07-25       Impact factor: 5.157

5.  The ionic strength dependence of the rate of a reaction between two large proteins with a dipole moment.

Authors:  J W Van Leeuwen
Journal:  Biochim Biophys Acta       Date:  1983-03-30

6.  Myoglobin and cytochrome b5: a nuclear magnetic resonance study of a highly dynamic protein complex.

Authors:  Jonathan A R Worrall; Yijeng Liu; Peter B Crowley; Judith M Nocek; Brian M Hoffman; Marcellus Ubbink
Journal:  Biochemistry       Date:  2002-10-01       Impact factor: 3.162

7.  Dynamic docking and electron transfer between myoglobin and cytochrome b(5).

Authors:  Zhao-Xun Liang; Min Jiang; Qing Ning; Brian M Hoffman
Journal:  J Biol Inorg Chem       Date:  2002-02-15       Impact factor: 3.358

8.  Dynamic docking and electron-transfer between cytochrome b5 and a suite of myoglobin surface-charge mutants. Introduction of a functional-docking algorithm for protein-protein complexes.

Authors:  Zhao-Xun Liang; Igor V Kurnikov; Judith M Nocek; A Grant Mauk; David N Beratan; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2004-03-10       Impact factor: 15.419

9.  The asymmetric distribution of charges on the surface of horse cytochrome c. Functional implications.

Authors:  W H Koppenol; E Margoliash
Journal:  J Biol Chem       Date:  1982-04-25       Impact factor: 5.157

10.  Fast purification of the Apo form and of a non-binding heme mutant of recombinant sperm whale myoglobin.

Authors:  Euripedes A Ribeiro; Wiliam C B Regis; Ljubica Tasic; Carlos H I Ramos
Journal:  Protein Expr Purif       Date:  2003-03       Impact factor: 1.650

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  6 in total

1.  Insights Into How Heme Reduction Potentials Modulate Enzymatic Activities of a Myoglobin-based Functional Oxidase.

Authors:  Ambika Bhagi-Damodaran; Maximilian Kahle; Yelu Shi; Yong Zhang; Pia Ädelroth; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-04       Impact factor: 15.336

2.  Charge-Disproportionation Symmetry Breaking Creates a Heterodimeric Myoglobin Complex with Enhanced Affinity and Rapid Intracomplex Electron Transfer.

Authors:  Ethan N Trana; Judith M Nocek; Jon Vander Woude; Ingrid Span; Stephen M Smith; Amy C Rosenzweig; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2016-09-20       Impact factor: 15.419

Review 3.  Design and fine-tuning redox potentials of metalloproteins involved in electron transfer in bioenergetics.

Authors:  Parisa Hosseinzadeh; Yi Lu
Journal:  Biochim Biophys Acta       Date:  2015-08-21

4.  Tryptophan-accelerated electron flow across a protein-protein interface.

Authors:  Kana Takematsu; Heather Williamson; Ana María Blanco-Rodríguez; Lucie Sokolová; Pavle Nikolovski; Jens T Kaiser; Michael Towrie; Ian P Clark; Antonín Vlček; Jay R Winkler; Harry B Gray
Journal:  J Am Chem Soc       Date:  2013-10-02       Impact factor: 15.419

5.  Symmetrized photoinitiated electron flow within the [myoglobin:cytochrome b₅] complex on singlet and triplet time scales: energetics vs dynamics.

Authors:  Nadia Petlakh Co; Ryan M Young; Amanda L Smeigh; Michael R Wasielewski; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2014-08-29       Impact factor: 15.419

6.  Structural basis of interprotein electron transfer in bacterial sulfite oxidation.

Authors:  Aaron P McGrath; Elise L Laming; G Patricia Casas Garcia; Marc Kvansakul; J Mitchell Guss; Jill Trewhella; Benoit Calmes; Paul V Bernhardt; Graeme R Hanson; Ulrike Kappler; Megan J Maher
Journal:  Elife       Date:  2015-12-19       Impact factor: 8.140

  6 in total

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